ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15i23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CY1_PARDE (P13627) Cytochrome c1 precursor 29 3.7
2HUCE1_RAT (Q5U4F0) Cerebral protein 1 homolog 28 4.9
3BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain ... 28 6.4
4HIS6_VIBCH (Q9KSW8) Imidazole glycerol phosphate synthase subuni... 28 8.3
5NAR1_RABIT (Q03515) GPI-linked NAD(P)(+)--arginine ADP-ribosyltr... 28 8.3
6EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor 28 8.3

>CY1_PARDE (P13627) Cytochrome c1 precursor|
          Length = 450

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 134 PSTATEDPAKAETESSPDSSVLSEAIAEEA 223
           P  A E+PA  E E++ + +   EA AEEA
Sbjct: 155 PEAAAEEPAAEEPEATEEEAPAEEAAAEEA 184



to top

>HUCE1_RAT (Q5U4F0) Cerebral protein 1 homolog|
          Length = 457

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +2

Query: 14  HLQGSPLFEIFLVRDEDETYTMKVVHLRPTKGXXXXXXXV----PSTATEDPAKAETES- 178
           H Q  PL  I    ++ +    +  +L PT+        V     STAT DP K+  ES 
Sbjct: 117 HRQAPPLGGISAGEEKGKRKCQEYSYLHPTQSLNSVDQTVHNSRTSTATLDPPKSSRESA 176

Query: 179 SPDSS 193
           SP+SS
Sbjct: 177 SPNSS 181



to top

>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein)
            (WBRS9) (Williams syndrome transcription factor) (hWALP2)
          Length = 1483

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 57   TKTRRTQ*RWYTCDRQKELQARRRPCHQQP-PKIQLRQRLRVHRTAVFYLKPLQRK 221
            T  ++ Q  W+ CD QKEL       H Q   + QL++RL      + +   L RK
Sbjct: 982  TTPKQGQNLWFLCDSQKELDELLNCLHPQGIRESQLKERLEKRYQDIIHSIHLARK 1037



to top

>HIS6_VIBCH (Q9KSW8) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 257

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 39  KYSSSETKTRRTQ*RWYTCDRQKELQAR 122
           +++  E++TR TQ  W TCD  +E+Q R
Sbjct: 144 QFTGDESRTRATQ--WQTCDWVQEVQKR 169



to top

>NAR1_RABIT (Q03515) GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1|
           precursor (EC 2.4.2.31) (Mono(ADP-ribosyl)transferase)
          Length = 327

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 87  YTCDRQKELQARRRPCH 137
           Y C+  KE+Q + RPCH
Sbjct: 275 YNCEYIKEMQCKSRPCH 291



to top

>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  GSPLFEIFLVRDEDETYTMKVVHLR 97
           G+PLFEIFL  D    Y  + V+L+
Sbjct: 239 GAPLFEIFLTLDGKGNYKKQAVYLK 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,119,961
Number of Sequences: 219361
Number of extensions: 399535
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top