ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549856.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-10
2dbj|AK070363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
4dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
5dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
6ref|XM_773667.1| Giardia lamblia ATCC 50803 hypothetical protein... 48 0.012
7gb|AC145882.3| Pan troglodytes BAC clone RP43-7E19 from 7, compl... 44 0.19
8gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome 44 0.19
9gb|DQ180391.1| Human herpesvirus 5 isolate D2 DNA polymerase gen... 44 0.19
10gb|DQ180379.1| Human herpesvirus 5 isolate D3 DNA polymerase gen... 44 0.19
11gb|DQ180362.1| Human herpesvirus 5 isolate D52 DNA polymerase ge... 44 0.19
12gb|AY486473.1|AY486470S04 Human herpesvirus 5 strain Toledo geno... 44 0.19
13gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete s... 44 0.19
14gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete seq... 44 0.19
15gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequ... 44 0.19
16gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete ... 44 0.19
17gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequ... 44 0.19
18gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete s... 44 0.19
19gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome 44 0.19
20gb|AY327256.1| Human herpesvirus 5 strain ATCC-VR977 DNA polymer... 44 0.19
21emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complet... 44 0.19
22gb|AF291828.1| Human herpesvirus 5 isolate E795 DNA polymerase g... 44 0.19
23gb|AF133628.1|AF133628 Human herpesvirus 5 isolate AW-J DNA poly... 44 0.19
24gb|AF133627.1|AF133627 Human herpesvirus 5 isolate AW-I DNA poly... 44 0.19
25gb|AF133626.1|AF133626 Human herpesvirus 5 isolate AW-H DNA poly... 44 0.19
26gb|AF133625.1|AF133625 Human herpesvirus 5 isolate AW-G DNA poly... 44 0.19
27gb|AF133624.1|AF133624 Human herpesvirus 5 isolate AW-F DNA poly... 44 0.19
28gb|AF133623.1|AF133623 Human herpesvirus 5 isolate AW-E DNA poly... 44 0.19
29gb|AF133622.1|AF133622 Human herpesvirus 5 isolate AW-D DNA poly... 44 0.19
30gb|AF133621.1|AF133621 Human herpesvirus 5 isolate AW-C DNA poly... 44 0.19
31gb|AF133620.1|AF133620 Human herpesvirus 5 isolate AW-B DNA poly... 44 0.19
32gb|AF133619.1|AF133619 Human herpesvirus 5 isolate CC-10 DNA pol... 44 0.19
33gb|AF133618.1|AF133618 Human herpesvirus 5 isolate CC-9 DNA poly... 44 0.19
34gb|AF133617.1|AF133617 Human herpesvirus 5 isolate CC-8 DNA poly... 44 0.19
35gb|AF133616.1|AF133616 Human herpesvirus 5 isolate CC-7 DNA poly... 44 0.19
36gb|AF133615.1|AF133615 Human herpesvirus 5 isolate CC-6 DNA poly... 44 0.19
37gb|AF133614.1|AF133614 Human herpesvirus 5 isolate CC-5 DNA poly... 44 0.19
38gb|AF133613.1|AF133613 Human herpesvirus 5 isolate CC-4 DNA poly... 44 0.19
39gb|AF133612.1|AF133612 Human herpesvirus 5 isolate NL-MG DNA pol... 44 0.19
40gb|AF133611.1|AF133611 Human herpesvirus 5 isolate NLPET8 DNA po... 44 0.19
41gb|AF133610.1|AF133610 Human herpesvirus 5 isolate NLMCG DNA pol... 44 0.19
42gb|AF133609.1|AF133609 Human herpesvirus 5 isolate NL9 DNA polym... 44 0.19
43gb|AF133608.1|AF133608 Human herpesvirus 5 isolate NL8 DNA polym... 44 0.19
44gb|AF133607.1|AF133607 Human herpesvirus 5 isolate NL6A DNA poly... 44 0.19
45gb|AF133606.1|AF133606 Human herpesvirus 5 isolate NL4 DNA polym... 44 0.19
46gb|AF133605.1|AF133605 Human herpesvirus 5 isolate NL2 DNA polym... 44 0.19
47gb|AF133604.1|AF133604 Human herpesvirus 5 isolate NL14 DNA poly... 44 0.19
48gb|AF133603.1|AF133603 Human herpesvirus 5 isolate NL13 DNA poly... 44 0.19
49gb|AF133602.1|AF133602 Human herpesvirus 5 isolate NL1 DNA polym... 44 0.19
50gb|AF133601.1|AF133601 Human herpesvirus 5 isolate E756 DNA poly... 44 0.19
51gb|AF133599.1|AF133599 Human herpesvirus 5 isolate E761 DNA poly... 44 0.19
52gb|AF133598.1|AF133598 Human herpesvirus 5 isolate E760 DNA poly... 44 0.19
53gb|AF133597.1|AF133597 Human herpesvirus 5 isolate E759 DNA poly... 44 0.19
54gb|AF133596.1|AF133596 Human herpesvirus 5 isolate E545 DNA poly... 44 0.19
55gb|AF133595.1|AF133595 Human herpesvirus 5 isolate E540 DNA poly... 44 0.19
56gb|AF133593.1|AF133593 Human herpesvirus 5 isolate E428 DNA poly... 44 0.19
57gb|AF133592.1|AF133592 Human herpesvirus 5 isolate C336 DNA poly... 44 0.19
58gb|AF133591.1|AF133591 Human herpesvirus 5 isolate C005 DNA poly... 44 0.19
59gb|AF133590.1|AF133590 Human herpesvirus 5 isolate C128 DNA poly... 44 0.19
60gb|AF133589.1|AF133589 Human herpesvirus 5 isolate C076 DNA poly... 44 0.19
61gb|M17209.1|HS5VF Human cytomegalovirus F fragment DNA encoding ... 44 0.19
62gb|M14709.1|HS5POL Human cytomegalovirus (HCMV) DNA polymerase (... 44 0.19
63dbj|D14981.1|HS5TS256 Human cytomegalovirus gene for DNA polymer... 44 0.19
64dbj|D14980.1|HS5TOWNE Human cytomegalovirus gene for DNA polymer... 44 0.19
65gb|AC131989.8| Mus musculus chromosome 14, clone RP24-186N15, co... 42 0.75
66gb|AC121560.17| Mus musculus chromosome 16, clone RP24-398G11, c... 40 3.0
67gb|AC140921.2| Mus musculus BAC clone RP24-472I23 from chromosom... 40 3.0
68gb|AC121572.2| Mus musculus BAC clone RP23-234P16 from 5, comple... 40 3.0
69gb|U23066.1|PAU23066 Persea americana flavanone 3-hydroxylase mR... 40 3.0 
>ref|XM_549856.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2381

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                       
Query: 33  tatttgaaatattcctcgtcagagacgaagacgagacgtacacaatgaaggtggtacact 92
           |||||||||| ||||| |||||||| || || ||||| || ||||||||||| |||||| 
Sbjct: 664 tatttgaaattttccttgtcagagatgacgatgagacatatacaatgaaggttgtacaca 723

                                    
Query: 93  tgcgaccgacaaaaggagcttcaag 117
           ||||||| ||||||||  |||||||
Sbjct: 724 tgcgaccaacaaaaggcacttcaag 748
to top
>dbj|AK070363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F20, full
           insert sequence
          Length = 2381

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                       
Query: 33  tatttgaaatattcctcgtcagagacgaagacgagacgtacacaatgaaggtggtacact 92
           |||||||||| ||||| |||||||| || || ||||| || ||||||||||| |||||| 
Sbjct: 664 tatttgaaattttccttgtcagagatgacgatgagacatatacaatgaaggttgtacaca 723

                                    
Query: 93  tgcgaccgacaaaaggagcttcaag 117
           ||||||| ||||||||  |||||||
Sbjct: 724 tgcgaccaacaaaaggcacttcaag 748
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 33     tatttgaaatattcctcgtcagagacgaagacgagacgtacacaatgaaggtg 85
              |||||||||| ||||| |||||||| || || ||||| || ||||||||||||
Sbjct: 418457 tatttgaaattttccttgtcagagatgacgatgagacatatacaatgaaggtg 418405
to top
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0005A05
          Length = 190834

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 33     tatttgaaatattcctcgtcagagacgaagacgagacgtacacaatgaaggtg 85
              |||||||||| ||||| |||||||| || || ||||| || ||||||||||||
Sbjct: 170295 tatttgaaattttccttgtcagagatgacgatgagacatatacaatgaaggtg 170243
to top
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 33    tatttgaaatattcctcgtcagagacgaagacgagacgtacacaatgaaggtg 85
             |||||||||| ||||| |||||||| || || ||||| || ||||||||||||
Sbjct: 58658 tatttgaaattttccttgtcagagatgacgatgagacatatacaatgaaggtg 58606
to top
>ref|XM_773667.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_82_36944_40936)
            partial mRNA
          Length = 3993

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 203  gaagccattgcagaggaagcaaac 226
            ||||||||||||||||||||||||
Sbjct: 3841 gaagccattgcagaggaagcaaac 3864
to top
>gb|AC145882.3| Pan troglodytes BAC clone RP43-7E19 from 7, complete sequence
          Length = 197080

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 155   ccagctaaggcagagactgaga 176
             ||||||||||||||||||||||
Sbjct: 26203 ccagctaaggcagagactgaga 26182
to top
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome
          Length = 235645

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   gcgtcgtcgtccgtgccatcaa 140
             ||||||||||||||||||||||
Sbjct: 78510 gcgtcgtcgtccgtgccatcaa 78531
to top
>gb|DQ180391.1| Human herpesvirus 5 isolate D2 DNA polymerase gene, complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|DQ180379.1| Human herpesvirus 5 isolate D3 DNA polymerase gene, complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|DQ180362.1| Human herpesvirus 5 isolate D52 DNA polymerase gene, complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AY486473.1|AY486470S04 Human herpesvirus 5 strain Toledo genome, partial sequence
          Length = 29148

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   gcgtcgtcgtccgtgccatcaa 140
             ||||||||||||||||||||||
Sbjct: 26141 gcgtcgtcgtccgtgccatcaa 26162
to top
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence
          Length = 233739

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 119    gcgtcgtcgtccgtgccatcaa 140
              ||||||||||||||||||||||
Sbjct: 143702 gcgtcgtcgtccgtgccatcaa 143681
to top
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence
          Length = 229209

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 119    gcgtcgtcgtccgtgccatcaa 140
              ||||||||||||||||||||||
Sbjct: 149667 gcgtcgtcgtccgtgccatcaa 149646
to top
>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence
          Length = 234881

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 119    gcgtcgtcgtccgtgccatcaa 140
              ||||||||||||||||||||||
Sbjct: 114233 gcgtcgtcgtccgtgccatcaa 114254
to top
>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence
          Length = 226889

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 119    gcgtcgtcgtccgtgccatcaa 140
              ||||||||||||||||||||||
Sbjct: 145097 gcgtcgtcgtccgtgccatcaa 145076
to top
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence
          Length = 229700

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 119    gcgtcgtcgtccgtgccatcaa 140
              ||||||||||||||||||||||
Sbjct: 149765 gcgtcgtcgtccgtgccatcaa 149744
to top
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence
          Length = 229483

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 119    gcgtcgtcgtccgtgccatcaa 140
              ||||||||||||||||||||||
Sbjct: 110021 gcgtcgtcgtccgtgccatcaa 110042
to top
>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome
          Length = 231236

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   gcgtcgtcgtccgtgccatcaa 140
             ||||||||||||||||||||||
Sbjct: 76717 gcgtcgtcgtccgtgccatcaa 76738
to top
>gb|AY327256.1| Human herpesvirus 5 strain ATCC-VR977 DNA polymerase (UL54) gene,
            complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome
          Length = 229354

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   gcgtcgtcgtccgtgccatcaa 140
             ||||||||||||||||||||||
Sbjct: 77219 gcgtcgtcgtccgtgccatcaa 77240
to top
>gb|AF291828.1| Human herpesvirus 5 isolate E795 DNA polymerase gene, complete cds
          Length = 3723

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3407 gcgtcgtcgtccgtgccatcaa 3386
to top
>gb|AF133628.1|AF133628 Human herpesvirus 5 isolate AW-J DNA polymerase (UL54) gene, complete
            cds
          Length = 3732

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3416 gcgtcgtcgtccgtgccatcaa 3395
to top
>gb|AF133627.1|AF133627 Human herpesvirus 5 isolate AW-I DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133626.1|AF133626 Human herpesvirus 5 isolate AW-H DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133625.1|AF133625 Human herpesvirus 5 isolate AW-G DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133624.1|AF133624 Human herpesvirus 5 isolate AW-F DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133623.1|AF133623 Human herpesvirus 5 isolate AW-E DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133622.1|AF133622 Human herpesvirus 5 isolate AW-D DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133621.1|AF133621 Human herpesvirus 5 isolate AW-C DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133620.1|AF133620 Human herpesvirus 5 isolate AW-B DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133619.1|AF133619 Human herpesvirus 5 isolate CC-10 DNA polymerase (UL54) gene,
            complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133618.1|AF133618 Human herpesvirus 5 isolate CC-9 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133617.1|AF133617 Human herpesvirus 5 isolate CC-8 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133616.1|AF133616 Human herpesvirus 5 isolate CC-7 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133615.1|AF133615 Human herpesvirus 5 isolate CC-6 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133614.1|AF133614 Human herpesvirus 5 isolate CC-5 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133613.1|AF133613 Human herpesvirus 5 isolate CC-4 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133612.1|AF133612 Human herpesvirus 5 isolate NL-MG DNA polymerase (UL54) gene,
            complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133611.1|AF133611 Human herpesvirus 5 isolate NLPET8 DNA polymerase (UL54) gene,
            complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133610.1|AF133610 Human herpesvirus 5 isolate NLMCG DNA polymerase (UL54) gene,
            complete cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133609.1|AF133609 Human herpesvirus 5 isolate NL9 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133608.1|AF133608 Human herpesvirus 5 isolate NL8 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133607.1|AF133607 Human herpesvirus 5 isolate NL6A DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133606.1|AF133606 Human herpesvirus 5 isolate NL4 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133605.1|AF133605 Human herpesvirus 5 isolate NL2 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133604.1|AF133604 Human herpesvirus 5 isolate NL14 DNA polymerase (UL54) gene, complete
            cds
          Length = 3723

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133603.1|AF133603 Human herpesvirus 5 isolate NL13 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133602.1|AF133602 Human herpesvirus 5 isolate NL1 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133601.1|AF133601 Human herpesvirus 5 isolate E756 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133599.1|AF133599 Human herpesvirus 5 isolate E761 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133598.1|AF133598 Human herpesvirus 5 isolate E760 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133597.1|AF133597 Human herpesvirus 5 isolate E759 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133596.1|AF133596 Human herpesvirus 5 isolate E545 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133595.1|AF133595 Human herpesvirus 5 isolate E540 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133593.1|AF133593 Human herpesvirus 5 isolate E428 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133592.1|AF133592 Human herpesvirus 5 isolate C336 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133591.1|AF133591 Human herpesvirus 5 isolate C005 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133590.1|AF133590 Human herpesvirus 5 isolate C128 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|AF133589.1|AF133589 Human herpesvirus 5 isolate C076 DNA polymerase (UL54) gene, complete
            cds
          Length = 3729

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 3413 gcgtcgtcgtccgtgccatcaa 3392
to top
>gb|M17209.1|HS5VF Human cytomegalovirus F fragment DNA encoding DNA polymerase and
             glycoprotein B, complete cds
          Length = 20349

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   gcgtcgtcgtccgtgccatcaa 140
             ||||||||||||||||||||||
Sbjct: 12699 gcgtcgtcgtccgtgccatcaa 12720
to top
>gb|M14709.1|HS5POL Human cytomegalovirus (HCMV) DNA polymerase (pol) gene (put.),
            complete cds and glycop rotein B gene, 3' end
          Length = 5280

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 4072 gcgtcgtcgtccgtgccatcaa 4051
to top
>dbj|D14981.1|HS5TS256 Human cytomegalovirus gene for DNA polymerase, temperature-sensitive
            mutation
          Length = 5090

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 2392 gcgtcgtcgtccgtgccatcaa 2413
to top
>dbj|D14980.1|HS5TOWNE Human cytomegalovirus gene for DNA polymerase, wild type
          Length = 5090

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 119  gcgtcgtcgtccgtgccatcaa 140
            ||||||||||||||||||||||
Sbjct: 2392 gcgtcgtcgtccgtgccatcaa 2413
to top
>gb|AC131989.8| Mus musculus chromosome 14, clone RP24-186N15, complete sequence
          Length = 180932

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 70    gtacacaatgaaggtggtacacttg 94
             |||||||| ||||||||||||||||
Sbjct: 99767 gtacacaaagaaggtggtacacttg 99743
to top
>gb|AC121560.17| Mus musculus chromosome 16, clone RP24-398G11, complete sequence
          Length = 189161

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gctgcatcttcagggcagcc 29
              ||||||||||||||||||||
Sbjct: 103315 gctgcatcttcagggcagcc 103296
to top
>gb|AC140921.2| Mus musculus BAC clone RP24-472I23 from chromosome 5, complete sequence
          Length = 181004

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tcttcagggcagcccactat 35
              ||||||||||||||||||||
Sbjct: 137589 tcttcagggcagcccactat 137608
to top
>gb|AC121572.2| Mus musculus BAC clone RP23-234P16 from 5, complete sequence
          Length = 136697

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tcttcagggcagcccactat 35
             ||||||||||||||||||||
Sbjct: 96014 tcttcagggcagcccactat 95995
to top
>gb|U23066.1|PAU23066 Persea americana flavanone 3-hydroxylase mRNA, complete cds
          Length = 1316

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  tcgtcagagacgaagacgag 67
           ||||||||||||||||||||
Sbjct: 84  tcgtcagagacgaagacgag 103


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,850,587
Number of Sequences: 3902068
Number of extensions: 1850587
Number of successful extensions: 32214
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32136
Number of HSP's gapped (non-prelim): 78
length of query: 232
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 210
effective length of database: 17,147,199,772
effective search space: 3600911952120
effective search space used: 3600911952120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top