ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15i09 |
|---|---|
| Clone Library Name | barley_pub |
>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)| Length = 411 Score = 232 bits (592), Expect = 6e-61 Identities = 114/207 (55%), Positives = 154/207 (74%) Frame = +1 Query: 13 RMRTLFDEASXRCRTAPMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFID 192 +++ LF++A RCR APMEG++F+ +D +A++ D ++++GS +KGTVF T +NGA +D Sbjct: 55 KLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVD 114 Query: 193 IQSKATAFLPIDEACLLDIDHIEEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAW 372 I +K++A+LP+ EAC+ I ++EEAGI G+ E+F+II EN D++ +LAW Sbjct: 115 ITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAW 174 Query: 373 ERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFV 552 ERCRQLQAED ALVEGL+ FVPFSQ+SSK++AEELL+KE+PLKFV Sbjct: 175 ERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFV 234 Query: 553 EVDEEQGRLVLSNRKAMADSQAQLGIG 633 EVDEEQ RLV+SNRKAMADSQAQLGIG Sbjct: 235 EVDEEQSRLVMSNRKAMADSQAQLGIG 261
>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A| Length = 328 Score = 118 bits (296), Expect = 1e-26 Identities = 66/179 (36%), Positives = 98/179 (54%) Frame = +1 Query: 73 ITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDID 252 I F+ ED + ++ D G ++ GTVF S GA IDI +K A++PI E + +D Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69 Query: 253 HIEEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXX 432 EE + E F++ DEN + + AWER RQLQAED Sbjct: 70 DPEEVLQPNETREFFILTDENEDGQLTLSIRRIEYMR-AWERVRQLQAEDATVRSNVFAT 128 Query: 433 XXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMAD 609 +EGL+ F+P S +S++ E+L+ ++LPLKF+EVDEE+ RLVLS+R+A+ + Sbjct: 129 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVE 187
>RS1_SYNP6 (P46228) 30S ribosomal protein S1| Length = 306 Score = 117 bits (292), Expect = 4e-26 Identities = 66/183 (36%), Positives = 98/183 (53%) Frame = +1 Query: 61 PMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACL 240 P I F+ ED + ++ D + G + GTVF GA IDI +K AFLP+ E + Sbjct: 6 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 65 Query: 241 LDIDHIEEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXX 420 ++ EE S + E F++ DEN + + AWER RQLQ ED Sbjct: 66 NRVESPEEVLQPSEMREFFILSDENEDGQLTLSIRRIEYMR-AWERVRQLQTEDATVRSE 124 Query: 421 XXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKA 600 +EGL+ F+P S +S++ E+L+ +ELPLKF+EVDE++ RLVLS+R+A Sbjct: 125 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 184 Query: 601 MAD 609 + + Sbjct: 185 LVE 187
>RS1_SYNP7 (O33698) 30S ribosomal protein S1| Length = 295 Score = 84.7 bits (208), Expect = 2e-16 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 3/184 (1%) Frame = +1 Query: 58 APMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEAC 237 +P T S +D A+E +D+ G L++G V +++GA+IDI KA AFLP EA Sbjct: 2 SPSAANTPSYDDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAA 61 Query: 238 L---LDIDHIEEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXX 408 L LD+ EA + +F++I + D + AW R +LQ Sbjct: 62 LHAVLDL----EAHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQT 117 Query: 409 XXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLS 588 A +EGL+AF+P S ++ K + L K L + F+EV+ +LVLS Sbjct: 118 VQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLS 177 Query: 589 NRKA 600 R+A Sbjct: 178 ERQA 181
>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1| Length = 263 Score = 75.9 bits (185), Expect = 9e-14 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 2/188 (1%) Frame = +1 Query: 76 TFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE-ACLLDID 252 +F+ + + ++ D ++G ++ GT+F NG +DI + +A+LPI E + +++ Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELN 66 Query: 253 HIEEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXX 432 + I +F ++D N AW+R RQL AED Sbjct: 67 NFNSLNIND--TREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGF 124 Query: 433 XXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-AD 609 +EG+ FVP S +++ + +K + LK + V+E+ L+LS+R+A+ A Sbjct: 125 NKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQ 184 Query: 610 SQAQLGIG 633 + + L +G Sbjct: 185 ASSNLIVG 192
>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B| Length = 305 Score = 59.7 bits (143), Expect = 7e-09 Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 1/186 (0%) Frame = +1 Query: 79 FSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDIDHI 258 FS ++ A++ D + G + G + + G ++D K+ F+P+ E L I Sbjct: 10 FSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEI 69 Query: 259 EEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXX 438 E++ + F++ E ++ +WE +L+ Sbjct: 70 EDSFPLDSAWD-FLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNK 128 Query: 439 XXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRK-AMADSQ 615 VEGL+ F+P S + K + L+ + L +E +++ +LVL+ R+ A+S Sbjct: 129 GGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESM 188 Query: 616 AQLGIG 633 ++ G Sbjct: 189 GKIAAG 194
>RS1_MYCTU (O06147) 30S ribosomal protein S1| Length = 481 Score = 45.4 bits (106), Expect = 1e-04 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 3/184 (1%) Frame = +1 Query: 82 SPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLL-DIDHI 258 S ED +A++ T + G +++GT+ + +DI K +P E + D+D Sbjct: 18 SSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPN 77 Query: 259 EEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXX 438 E + G + +++ + + + AW L+ +D Sbjct: 78 EVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVK 135 Query: 439 XXXXALVEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADS 612 + GL+ F+P S V + + + KE+ K +E+D+ + +VLS R + + Sbjct: 136 GGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQT 194 Query: 613 QAQL 624 Q+++ Sbjct: 195 QSEV 198
>RS1_MYCLE (P46836) 30S ribosomal protein S1| Length = 481 Score = 45.1 bits (105), Expect = 2e-04 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 3/184 (1%) Frame = +1 Query: 82 SPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLL-DIDHI 258 S ED +A++ T + G +++GT+ + +DI K +P E + D+D Sbjct: 18 SSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPN 77 Query: 259 EEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXX 438 E + G + +++ + + + AW L+ +D Sbjct: 78 EVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVK 135 Query: 439 XXXXALVEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADS 612 + GL+ F+P S V + + + KE+ K +E+D+ + +VLS R + + Sbjct: 136 GGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQT 194 Query: 613 QAQL 624 Q+++ Sbjct: 195 QSEV 198
>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1| Length = 566 Score = 41.2 bits (95), Expect = 0.003 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 11/177 (6%) Frame = +1 Query: 118 DIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE----ACLLDI---DHIEEA--G 270 +I T GS+I+GTV T + +D + K+ + +PID+ L++ D I+ A Sbjct: 15 NIKTRPGSIIQGTVVAITKDTILVDAKLKSESKIPIDQFKNSQGELEVKVGDQIDVALDA 74 Query: 271 IRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXX 450 I G E + ++ E AW Q + Sbjct: 75 IEDGFGETLLSREKAKRHE-------------AWLTLEQAYKDSKTVVGLINGKVKGGFT 121 Query: 451 ALVEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ 615 +E ++AF+P S V + E L KEL K +++D+++ +V+S R+A+ +S+ Sbjct: 122 VELEDIRAFLPGSLVDIRPVRETMHLEGKELEFKVIKLDQKRNNVVVS-RRAVIESE 177
>RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)| Length = 565 Score = 37.0 bits (84), Expect = 0.049 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 2/163 (1%) Frame = +1 Query: 139 SLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDIDHIEEAGIRSGLVEQFMIIDENP 318 S+IKG V + A ID+ K +P+ E D+ + G VE F+ EN Sbjct: 31 SVIKGKVVAIEKDMAVIDVGLKTEGRVPLREFAGPGRDNEIKVG---DTVEVFLDRIENA 87 Query: 319 NDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVS 498 E + +W + + + ++G AF+P SQV Sbjct: 88 LGEAVLSRDKARREE-SWGKLEKAFQNNEKVFGVIFNQVKGGFTVDLDGAVAFLPRSQVD 146 Query: 499 SKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ 621 + + L++ P + +++D +G +V+S R + +++A+ Sbjct: 147 IRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAE 189
>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1| Length = 580 Score = 37.0 bits (84), Expect = 0.049 Identities = 34/184 (18%), Positives = 74/184 (40%), Gaps = 2/184 (1%) Frame = +1 Query: 58 APMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEAC 237 A + + ++ + S+ E +D + G+++KGTV + +D+ K+ +P+ E Sbjct: 26 AEFKDLLYTAHRITSSEEESDNEIQPGAILKGTVVDINKDFVVVDVGLKSEGVIPMSEF- 84 Query: 238 LLDIDHIEEAGIRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXX 417 ID E G+ G + + + WE E+ Sbjct: 85 ---IDSSE--GLVLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYI-LAHCEEGSIVK 138 Query: 418 XXXXXXXXXXXALVEGLKAFVPFSQVSSK--TTAEELLDKELPLKFVEVDEEQGRLVLSN 591 + G++AF+P SQ+ +K ++ + K K ++++ E+ +V+S Sbjct: 139 GQITRKVKGGLIVDIGMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVERRNIVVSR 198 Query: 592 RKAM 603 R+ + Sbjct: 199 RELL 202
>RS1_BUCAP (Q44653) 30S ribosomal protein S1| Length = 559 Score = 36.2 bits (82), Expect = 0.083 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 11/177 (6%) Frame = +1 Query: 118 DIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE----ACLLDI---DHIEEA--G 270 +I T GS+I+GT+ + +D K+ + +P+++ LLD+ D I+ A Sbjct: 15 EIKTRPGSIIRGTIVSIEKDIVLVDAGLKSESAIPVEQFKNAQGLLDVKVGDQIDVALDA 74 Query: 271 IRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXX 450 I G E + ++ E AW Q + Sbjct: 75 IEDGFGETLLSREKAKRHE-------------AWLILEQAHEKSETVIGIINGKVKGGFT 121 Query: 451 ALVEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ 615 + ++AF+P S V + + L KEL K +++D+++ +V+S R+A+ +S+ Sbjct: 122 VELNEIRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVS-RRAVIESE 177
>RS1_BUCAI (P57395) 30S ribosomal protein S1| Length = 558 Score = 35.8 bits (81), Expect = 0.11 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 11/177 (6%) Frame = +1 Query: 118 DIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE----ACLLDI---DHIEEA--G 270 +I T GS+I+GT+ + +D K+ + +P+++ LLDI D I+ A Sbjct: 15 EIKTRPGSIIRGTIVSIEKDMVLVDAGLKSESAIPVEQFQNSQGLLDIQVGDQIDVALDA 74 Query: 271 IRSGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXX 450 I G E + ++ E AW + + Sbjct: 75 IEDGFGETLLSREKAKRHE-------------AWLILEKAHEKSETVIGIINGKVKGGFT 121 Query: 451 ALVEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ 615 + ++AF+P S V + + L KEL K +++D+++ +V+S R+A+ +S+ Sbjct: 122 VELNDIRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVS-RRAVIESE 177
>RS1_LEULA (P50889) 40S ribosomal protein S1| Length = 429 Score = 34.3 bits (77), Expect = 0.32 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Frame = +1 Query: 457 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMA 606 V G++ FVP S V+ + ++ + +K++ + +E+D RL+LS RKA+A Sbjct: 163 VNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS-RKAVA 213
>RS1_CHLTR (O84100) 30S ribosomal protein S1| Length = 569 Score = 33.9 bits (76), Expect = 0.41 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 3/183 (1%) Frame = +1 Query: 64 MEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLL 243 M G T + E+ S V G+++KGTV + + +D+ K+ +P+ E Sbjct: 35 MYGFTATEEEPTSEVHP-------GAILKGTVVDISKDFVVVDVGLKSEGVIPMSEF--- 84 Query: 244 DIDHIEEAGIRSGLVEQFMIIDENPNDE-TXXXXXXXXXXDLAWERCRQLQAEDXXXXXX 420 ID E G+ G E + +D+ +DE WE E+ Sbjct: 85 -IDSSE--GLTVG-AEVEVYLDQTEDDEGKVVLSREKATRQRQWEYI-LAHCEEGSIVKG 139 Query: 421 XXXXXXXXXXALVEGLKAFVPFSQVSSK--TTAEELLDKELPLKFVEVDEEQGRLVLSNR 594 + G++AF+P SQ+ +K ++ + K K ++++ ++ +V+S R Sbjct: 140 QITRKVKGGLIVDIGMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRR 199 Query: 595 KAM 603 + + Sbjct: 200 ELL 202
>ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1| Length = 223 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +1 Query: 25 LFDEASXRCRTAPMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSK 204 LFD+ R P++G ++P +G ++ G + +NG +DI S Sbjct: 36 LFDQTETHVRVIPLKG-RYTPS--------------VGDVVIGIIREVAANGWAVDIYSP 80 Query: 205 ATAFLPIDE 231 AFLP+ E Sbjct: 81 YQAFLPVSE 89
>SYT_WIGBR (Q8D3C0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 636 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Frame = -3 Query: 386 CLH---LSQARSC*IDCKLRIKV-SSFGFSSIIMNCSTKPD-RMPASSIWSISRRHAS-S 225 C+H LS+ SC K+ +V S FGF I++ ST+P+ R+ + IW + + S Sbjct: 387 CMHDQILSEVSSC---IKMIYEVYSCFGFKKILVKLSTRPENRIGSDEIWDFAEKQLELS 443 Query: 224 IGKKAVAF 201 + K + F Sbjct: 444 LKKNKILF 451
>IF2A_SULSO (Q97Z79) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 266 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Frame = +1 Query: 463 GLKAFVPFSQVSSK--TTAEELL--DKELPLKFVEVDEEQGRLVLSNRKAMADSQ 615 GL+AF+P+S+VSSK ++L ++++ +K + VD +G + +S +K D + Sbjct: 36 GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDER 90
>SYT_PROMM (Q7V8D2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 640 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = -3 Query: 323 SFGFSSIIMNCSTKPD-RMPASSIWSISRRHAS-SIGKKAVAFD 198 SFGF S+++ ST+P+ R+ + IW S + S ++ K +A+D Sbjct: 409 SFGFDSVLIKLSTRPEKRVGSDEIWDKSEKALSDALDAKGLAWD 452
>PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 745 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/70 (24%), Positives = 32/70 (45%) Frame = +1 Query: 106 VETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDIDHIEEAGIRSGL 285 ++ ++ +IG + GTV +GAFI+ F+ I E ID + + + Sbjct: 613 IKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARIDKVSSVLKQGDI 672 Query: 286 VEQFMIIDEN 315 V+ +I +N Sbjct: 673 VKVKLIGFDN 682
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 29.6 bits (65), Expect = 7.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 55 TAPMEGITFSPEDLESAVETTDIDTDI 135 T P E IT SPE++ S E T + TD+ Sbjct: 621 TIPTEVITVSPEEIISPTEVTPVPTDV 647 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,829,590 Number of Sequences: 219361 Number of extensions: 1516380 Number of successful extensions: 4070 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4060 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
