ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9n10 |
|---|---|
| Clone Library Name | barley_pub |
>PSMF1_HUMAN (Q92530) Proteasome inhibitor PI31 subunit (hPI31)| Length = 271 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +3 Query: 180 FSQREMPTNSYCGL*VGNAPGPH--TLV*LPNAWNH 281 F E+ T+ YCGL VG+ PGP+ LP WN+ Sbjct: 25 FLHWEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNN 60
>FBX41_HUMAN (Q8TF61) F-box only protein 41| Length = 874 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +2 Query: 386 VQPEHPCPRPSGIPNRCLRYL-HLWP 460 V P HPC +P+ NRCL+ + WP Sbjct: 717 VAPLHPCQQPTRFSNRCLQMIGRCWP 742
>FBX41_MOUSE (Q6NS60) F-box only protein 41| Length = 872 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +2 Query: 386 VQPEHPCPRPSGIPNRCLRYL-HLWP 460 V P HPC +P+ NRCL+ + WP Sbjct: 715 VAPLHPCQQPTRFSNRCLQMIGRCWP 740
>HIS81_HAEIN (P44423) Histidinol-phosphate aminotransferase 1 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 1) Length = 367 Score = 29.6 bits (65), Expect = 6.8 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +2 Query: 221 LSWKRTWPTHTSLTSQCLESRTTLVKKNSKLGDHNLDWHGINIFITRTHMGATSSVQPEH 400 L WK+T T T+L+ Q +++ T + KLG + W N + T + + Sbjct: 9 LQWKKTIMTITTLSRQNIQALTP-YQSARKLGGNGTIWLNANEYPTSPEFQLSGKDLNRY 67 Query: 401 PCPRPSGIPNRCLRY 445 P P+P + Y Sbjct: 68 PEPQPQRVVQAYANY 82
>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)| (Strand-exchange protein 1 homolog) (Protein Dhm2) Length = 1719 Score = 29.6 bits (65), Expect = 6.8 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 430 QMPPISSPVASLYHVCAMKGV 492 QMPP+S+PV L +C++ G+ Sbjct: 1463 QMPPVSTPVTELSRICSLVGM 1483
>DEOB_STAAW (P63926) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 526 LRRVGCGSVSRQPLSWHTHDTERPQVKISEASVRNATWSGAW 401 L ++G G++ + P+ E K+SEASV T +G W Sbjct: 49 LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHW 90
>DEOB_STAAS (Q6GCY5) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 526 LRRVGCGSVSRQPLSWHTHDTERPQVKISEASVRNATWSGAW 401 L ++G G++ + P+ E K+SEASV T +G W Sbjct: 49 LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHW 90
>DEOB_STAAR (Q6GKG6) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 526 LRRVGCGSVSRQPLSWHTHDTERPQVKISEASVRNATWSGAW 401 L ++G G++ + P+ E K+SEASV T +G W Sbjct: 49 LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHW 90
>DEOB_STAAN (P99100) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 526 LRRVGCGSVSRQPLSWHTHDTERPQVKISEASVRNATWSGAW 401 L ++G G++ + P+ E K+SEASV T +G W Sbjct: 49 LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHW 90
>DEOB_STAAM (P63925) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 526 LRRVGCGSVSRQPLSWHTHDTERPQVKISEASVRNATWSGAW 401 L ++G G++ + P+ E K+SEASV T +G W Sbjct: 49 LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHW 90
>DEOB_STAAC (Q5HJM9) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 526 LRRVGCGSVSRQPLSWHTHDTERPQVKISEASVRNATWSGAW 401 L ++G G++ + P+ E K+SEASV T +G W Sbjct: 49 LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHW 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,572,224 Number of Sequences: 219361 Number of extensions: 2011562 Number of successful extensions: 4161 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4160 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
