| Clone Name | rbaal9n10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 141 tgcagagggtgtcctctttaccgacaaataacaaatttctttagtc 186 |||||||||||| ||||||||| || | |||| |||||||||||| Sbjct: 264874 tgcagagggtgtactctttacccacgagtaacggatttctttagtc 264829
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 44.1 bits (22), Expect = 0.52 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 71 actgacacttgacctatcccacactgtagtccttcaccgctgacaaggct 120 |||||||||| ||| | |||| |||||||||||||||||| |||| |||| Sbjct: 226727 actgacacttcaccaa-cccagactgtagtccttcaccgcggacacggct 226679
>gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete sequence Length = 116909 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aaacgtataataatttgataa 21 ||||||||||||||||||||| Sbjct: 24135 aaacgtataataatttgataa 24115
>emb|AL354803.24| Human DNA sequence from clone RP11-539I23 on chromosome 13 Contains the 5' end of a novel gene, complete sequence Length = 179380 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 aaataaatattataatgtgca 144 ||||||||||||||||||||| Sbjct: 104893 aaataaatattataatgtgca 104873
>emb|BX470211.10| Zebrafish DNA sequence from clone DKEY-165A24 in linkage group 7, complete sequence Length = 173552 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 ttctcatcatgtttcagttaa 59 ||||||||||||||||||||| Sbjct: 171933 ttctcatcatgtttcagttaa 171913
>emb|CR352295.8| Zebrafish DNA sequence from clone DKEY-30J11 in linkage group 7, complete sequence Length = 119970 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 ttctcatcatgtttcagttaa 59 ||||||||||||||||||||| Sbjct: 78469 ttctcatcatgtttcagttaa 78449
>emb|BX649313.6| Zebrafish DNA sequence from clone DKEY-112A7 in linkage group 7, complete sequence Length = 104374 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 ttctcatcatgtttcagttaa 59 ||||||||||||||||||||| Sbjct: 72291 ttctcatcatgtttcagttaa 72311
>emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chromosome 11 Contains the Ywhae gene for tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon polypeptide, the Doc2b gene for double C2 beta, a novl gene, the 3' end of the gene for a novel protein similar to rat rabphilin-3a related protein and two CpG islands, complete sequence Length = 178980 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 460 tctctgtatcatgtgtgtgcc 480 ||||||||||||||||||||| Sbjct: 38059 tctctgtatcatgtgtgtgcc 38079
>emb|BX470146.8| Zebrafish DNA sequence from clone DKEY-126D11 in linkage group 7, complete sequence Length = 168554 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 ttctcatcatgtttcagttaa 59 ||||||||||||||||||||| Sbjct: 58086 ttctcatcatgtttcagttaa 58066
>gb|AC025759.4| Homo sapiens chromosome 5 clone CTD-2367B21, complete sequence Length = 147404 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 acactcgttaagaaaaactct 307 ||||||||||||||||||||| Sbjct: 23839 acactcgttaagaaaaactct 23819
>gb|AC010486.5|AC010486 Homo sapiens chromosome 5 clone CTD-2331D11, complete sequence Length = 105234 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 acactcgttaagaaaaactct 307 ||||||||||||||||||||| Sbjct: 80621 acactcgttaagaaaaactct 80601
>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence Length = 144031 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 tgacctatcccacactgtagt 100 ||||||||||||||||||||| Sbjct: 95743 tgacctatcccacactgtagt 95763
>emb|BX005310.6| Zebrafish DNA sequence from clone CH211-214J2 in linkage group 7, complete sequence Length = 221979 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 ttctcatcatgtttcagttaa 59 ||||||||||||||||||||| Sbjct: 221599 ttctcatcatgtttcagttaa 221619
>gb|AE001388.1| Plasmodium falciparum 3D7 chromosome 2 section 25 of 73 of the complete sequence Length = 14135 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ttcaaataaatattataatg 140 |||||||||||||||||||| Sbjct: 10360 ttcaaataaatattataatg 10379
>ref|XM_418309.1| PREDICTED: Gallus gallus similar to Myelin P2 protein (LOC420198), mRNA Length = 774 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gtgtgccatgaaaggggttg 493 |||||||||||||||||||| Sbjct: 409 gtgtgccatgaaaggggttg 428
>gb|AC183324.3| Myotis lucifugus clone CH235-22K20, complete sequence Length = 198971 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acaaataacaaatttcttta 183 |||||||||||||||||||| Sbjct: 73638 acaaataacaaatttcttta 73619
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 catgtttcagttaattccta 65 |||||||||||||||||||| Sbjct: 2745831 catgtttcagttaattccta 2745850
>gb|AC122535.3| Mus musculus BAC clone RP24-539K4 from chromosome 7, complete sequence Length = 186561 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 acatatttataacacgcacacaca 368 ||||||||||||||| |||||||| Sbjct: 181915 acatatttataacacacacacaca 181892
>gb|AC144758.2| Danio rerio, complete sequence Length = 177787 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 acatatttataacacgcacacaca 368 ||||||||||||||| |||||||| Sbjct: 93862 acatatttataacacacacacaca 93885
>gb|AC005248.1| Homo sapiens BAC clone GS1-83B20 from 7, complete sequence Length = 68464 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 atttataacacgcacacaca 368 |||||||||||||||||||| Sbjct: 66507 atttataacacgcacacaca 66526
>ref|XM_988847.1| PREDICTED: Mus musculus similar to transmembrane protein SHREW1 (LOC433810), mRNA Length = 1898 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 ctctgtatcatgtgtgtgcc 480 |||||||||||||||||||| Sbjct: 662 ctctgtatcatgtgtgtgcc 643
>ref|XM_001000455.1| PREDICTED: Mus musculus similar to transmembrane protein SHREW1 (LOC433810), mRNA Length = 1953 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 ctctgtatcatgtgtgtgcc 480 |||||||||||||||||||| Sbjct: 717 ctctgtatcatgtgtgtgcc 698
>ref|XM_485506.4| PREDICTED: Mus musculus similar to transmembrane protein SHREW1, transcript variant 1 (LOC433810), mRNA Length = 1898 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 ctctgtatcatgtgtgtgcc 480 |||||||||||||||||||| Sbjct: 662 ctctgtatcatgtgtgtgcc 643
>gb|AC130843.3| Mus musculus BAC clone RP24-501N9 from chromosome 1, complete sequence Length = 141921 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 taacttcccaatgcctggaa 277 |||||||||||||||||||| Sbjct: 13121 taacttcccaatgcctggaa 13140
>gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, complete sequence Length = 170622 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 taacttcccaatgcctggaa 277 |||||||||||||||||||| Sbjct: 42699 taacttcccaatgcctggaa 42680
>gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence Length = 190325 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 acatatttataacacgcacacaca 368 ||||||||||||||| |||||||| Sbjct: 151914 acatatttataacacacacacaca 151937
>emb|AL512306.16| Human DNA sequence from clone RP11-430C7 on chromosome 1 Contains the MDM4 gene for Mdm4 (transformed 3T3 cell double minute 4) p53 binding protein (mouse), a PEF protein with a long N-terminal hydrophobic domain (peflin) (PEF) pseudogene, two novel genes and the 3' end of the LRRN5 gene for leucine rich repeat neuronal 5, complete sequence Length = 133984 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gcacctggcccacacacact 253 |||||||||||||||||||| Sbjct: 56246 gcacctggcccacacacact 56227
>gb|AC128353.6| Rattus norvegicus 13 BAC CH230-148A5 (Children's Hospital Oakland Research Institute) complete sequence Length = 207556 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tctctgtatcatgtgtgtgccatg 483 |||||||||||||||| ||||||| Sbjct: 163563 tctctgtatcatgtgtatgccatg 163540
>emb|AL031347.1|HS596H12 Human DNA sequence from clone RP4-596H12 on chromosome 6p22.2-22.3, complete sequence Length = 175555 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tttcaaataaatattataat 139 |||||||||||||||||||| Sbjct: 149248 tttcaaataaatattataat 149267
>emb|CR523331.1| Gallus gallus finished cDNA, clone ChEST879i3 Length = 668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gtgtgccatgaaaggggttg 493 |||||||||||||||||||| Sbjct: 426 gtgtgccatgaaaggggttg 445
>emb|BX322795.7| Zebrafish DNA sequence from clone CH211-106E12 in linkage group 3, complete sequence Length = 173658 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aataacaaatttctttagtc 186 |||||||||||||||||||| Sbjct: 139067 aataacaaatttctttagtc 139086
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 catgtttcagttaattccta 65 |||||||||||||||||||| Sbjct: 2745941 catgtttcagttaattccta 2745960
>gb|AC106772.3| Homo sapiens chromosome 5 clone RP11-310P5, complete sequence Length = 161984 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 atcttcacctgtggcctctctgta 467 |||| ||||||||||||||||||| Sbjct: 47238 atctccacctgtggcctctctgta 47215
>emb|BX935863.1| Gallus gallus finished cDNA, clone ChEST164g15 Length = 778 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gtgtgccatgaaaggggttg 493 |||||||||||||||||||| Sbjct: 409 gtgtgccatgaaaggggttg 428
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 catgtttcagttaattccta 65 |||||||||||||||||||| Sbjct: 17787 catgtttcagttaattccta 17806
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 catgtttcagttaattccta 65 |||||||||||||||||||| Sbjct: 90750 catgtttcagttaattccta 90769
>gb|AC155246.1| Mus musculus BAC clone RP24-303C15 from 14, complete sequence Length = 151983 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 gtagtccttcaccgctgacaaggctttc 123 |||||||||||| |||||||||| |||| Sbjct: 105431 gtagtccttcacagctgacaaggatttc 105404
>gb|AF063866.1|AF063866 Melanoplus sanguinipes entomopoxvirus, complete genome Length = 236120 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 gctttcaaataaatattataatgt 141 |||||||||||||||| ||||||| Sbjct: 202192 gctttcaaataaatatcataatgt 202215
>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence Length = 162405 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 acctgtggcctctctgtatc 469 |||||||||||||||||||| Sbjct: 74859 acctgtggcctctctgtatc 74840
>gb|AC121951.3| Mus musculus BAC clone RP24-217M7 from 9, complete sequence Length = 163528 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 acacgcacacacatgggcgc 375 |||||||||||||||||||| Sbjct: 99521 acacgcacacacatgggcgc 99540
>emb|AL929012.4| Mouse DNA sequence from clone RP23-477G20 on chromosome 2, complete sequence Length = 201304 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 aggctttcaaataaatatta 135 |||||||||||||||||||| Sbjct: 52097 aggctttcaaataaatatta 52078
>emb|AL805910.7| Mouse DNA sequence from clone RP23-144K17 on chromosome 4, complete sequence Length = 200933 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 ctctgtatcatgtgtgtgcc 480 |||||||||||||||||||| Sbjct: 189419 ctctgtatcatgtgtgtgcc 189438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,504,121 Number of Sequences: 3902068 Number of extensions: 5504121 Number of successful extensions: 111460 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111285 Number of HSP's gapped (non-prelim): 175 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)