| Clone Name | bags15h22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108636.1| Zea mays PCO138259 mRNA sequence Length = 1312 Score = 135 bits (68), Expect = 2e-28 Identities = 216/265 (81%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 100 gagtaaatgaagtgcgtacaagaggcaacacccgtgattttgggcgtgatggcttccgac 159 |||||||||||||||||||||||||| |||| |||||||| || ||||| ||| ||| Sbjct: 353 gagtaaatgaagtgcgtacaagaggcc---cccgcgattttggccgagatggtttcagac 409 Query: 160 gagatcctgtaagagatggaagggatgtatactgggaccgaagggatagggagaggagtt 219 ||||||| ||| |||| || ||| |||||||||| ||||||| ||||| |||| | Sbjct: 410 gagatccaagaaggtatggtagagatccatactgggacagaagggacagggaacggagct 469 Query: 220 atgatcgtcaccgggatagagatccgtaccatgacagggatagcgatagacctcgtgacc 279 |||||||| || |||||||| ||||||||||||||||| |||||| | ||||| | Sbjct: 470 atgatcgt------gaaagagatccctaccatgacagggatagtgatagatcccgtgagc 523 Query: 280 atgatagagacagatatgatgaacgtgggggatttgatcatgagatggactattccatgg 339 |||||||||| ||| || |||||| ||| |||||| || || || |||||| |||||| Sbjct: 524 atgatagagaaagagattatgaacatggtggatttaatagagaaattgactatcccatgg 583 Query: 340 atcgagatcatgaaggagatgagag 364 | ||||||| ||||||||||||||| Sbjct: 584 accgagatcgtgaaggagatgagag 608
>gb|BT016281.1| Zea mays clone Contig114 mRNA sequence Length = 899 Score = 107 bits (54), Expect = 4e-20 Identities = 146/177 (82%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 188 atactgggaccgaagggatagggagaggagttatgatcgtcaccgggatagagatccgta 247 |||||||||| ||||||| ||||| |||| ||||||||| || |||||||| || Sbjct: 18 atactgggacagaagggacagggaacggagctatgatcgt------gaaagagatcccta 71 Query: 248 ccatgacagggatagcgatagacctcgtgaccatgatagagacagatatgatgaacgtgg 307 ||||||||||||||| |||||| | ||||| ||||||||||| ||| || |||||| ||| Sbjct: 72 ccatgacagggatagtgatagatcccgtgagcatgatagagaaagagattatgaacatgg 131 Query: 308 gggatttgatcatgagatggactattccatggatcgagatcatgaaggagatgagag 364 |||||| || || || |||||| ||||||| ||||||| ||||||||||||||| Sbjct: 132 tggatttaatagagaaattgactatcccatggaccgagatcgtgaaggagatgagag 188
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 237 agagatccgtaccatgacagggatagcgatagacctcgtgaccatgatagagacagatat 296 |||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||| | Sbjct: 6062783 agagatccctaccatgacagggatagtgatagatctcgtgaccgtgatagagacagattt 6062842 Query: 297 gatgaacgtgggggatttgatcatgagatggactattccatggatcgagatcatg 351 | |||| | | || |||||||| || || |||||| ||||||||| |||||||| Sbjct: 6062843 tacgaacctagaggctttgatcaagaaattgactatcccatggatcaagatcatg 6062897 Score = 65.9 bits (33), Expect = 1e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 420 gattccgataatgacagggagaaggaaaattcaaaaggctatgatagtgaaagagataaa 479 ||||| ||||||||||| || || ||||| || |||| |||||||||||||||||| ||| Sbjct: 6062948 gattcggataatgacagagaaaaagaaaactctaaagactatgatagtgaaagagagaaa 6063007 Query: 480 gaagacaaggaacagccaccaaggaaaaggttcag 514 ||| ||||| |||| | |||| ||||||||||| Sbjct: 6063008 gaa---aaggagcagcgatcaagaaaaaggttcag 6063039
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 237 agagatccgtaccatgacagggatagcgatagacctcgtgaccatgatagagacagatat 296 |||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||| | Sbjct: 28265 agagatccctaccatgacagggatagtgatagatctcgtgaccgtgatagagacagattt 28324 Query: 297 gatgaacgtgggggatttgatcatgagatggactattccatggatcgagatcatg 351 | |||| | | || |||||||| || || |||||| ||||||||| |||||||| Sbjct: 28325 tacgaacctagaggctttgatcaagaaattgactatcccatggatcaagatcatg 28379 Score = 65.9 bits (33), Expect = 1e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 420 gattccgataatgacagggagaaggaaaattcaaaaggctatgatagtgaaagagataaa 479 ||||| ||||||||||| || || ||||| || |||| |||||||||||||||||| ||| Sbjct: 28430 gattcggataatgacagagaaaaagaaaactctaaagactatgatagtgaaagagagaaa 28489 Query: 480 gaagacaaggaacagccaccaaggaaaaggttcag 514 ||| ||||| |||| | |||| ||||||||||| Sbjct: 28490 gaa---aaggagcagcgatcaagaaaaaggttcag 28521
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 237 agagatccgtaccatgacagggatagcgatagacctcgtgaccatgatagagacagatat 296 |||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||| | Sbjct: 83622 agagatccctaccatgacagggatagtgatagatctcgtgaccgtgatagagacagattt 83681 Query: 297 gatgaacgtgggggatttgatcatgagatggactattccatggatcgagatcatg 351 | |||| | | || |||||||| || || |||||| ||||||||| |||||||| Sbjct: 83682 tacgaacctagaggctttgatcaagaaattgactatcccatggatcaagatcatg 83736 Score = 65.9 bits (33), Expect = 1e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 420 gattccgataatgacagggagaaggaaaattcaaaaggctatgatagtgaaagagataaa 479 ||||| ||||||||||| || || ||||| || |||| |||||||||||||||||| ||| Sbjct: 83787 gattcggataatgacagagaaaaagaaaactctaaagactatgatagtgaaagagagaaa 83846 Query: 480 gaagacaaggaacagccaccaaggaaaaggttcag 514 ||| ||||| |||| | |||| ||||||||||| Sbjct: 83847 gaa---aaggagcagcgatcaagaaaaaggttcag 83878
>dbj|AK067315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105L15, full insert sequence Length = 3653 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 237 agagatccgtaccatgacagggatagcgatagacctcgtgaccatgatagagacagatat 296 |||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||| | Sbjct: 1410 agagatccctaccatgacagggatagtgatagatctcgtgaccgtgatagagacagattt 1469 Query: 297 gatgaacgtgggggatttgatcatgagatggactattccatggatcgagatcatg 351 | |||| | | || |||||||| || || |||||| ||||||||| |||||||| Sbjct: 1470 tacgaacctagaggctttgatcaagaaattgactatcccatggatcaagatcatg 1524 Score = 65.9 bits (33), Expect = 1e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 420 gattccgataatgacagggagaaggaaaattcaaaaggctatgatagtgaaagagataaa 479 ||||| ||||||||||| || || ||||| || |||| |||||||||||||||||| ||| Sbjct: 1575 gattcggataatgacagagaaaaagaaaactctaaagactatgatagtgaaagagagaaa 1634 Query: 480 gaagacaaggaacagccaccaaggaaaaggttcag 514 ||| ||||| |||| | |||| ||||||||||| Sbjct: 1635 gaa---aaggagcagcgatcaagaaaaaggttcag 1666
>gb|U41279.1| Caenorhabditis elegans cosmid C17C3, complete sequence Length = 45355 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 tggatcgagatcatgaaggag 357 ||||||||||||||||||||| Sbjct: 16501 tggatcgagatcatgaaggag 16481
>gb|AC148486.17| Medicago truncatula clone mth2-56d23, complete sequence Length = 121459 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 aaaggctatgatagtgaaaga 473 ||||||||||||||||||||| Sbjct: 19844 aaaggctatgatagtgaaaga 19824
>ref|NM_062667.3| Caenorhabditis elegans Acyl CoA DeHydrogenase family member (acdh-2) (acdh-2) mRNA, complete cds Length = 1112 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 tggatcgagatcatgaaggag 357 ||||||||||||||||||||| Sbjct: 598 tggatcgagatcatgaaggag 618
>ref|NM_062665.3| Caenorhabditis elegans Acyl CoA DeHydrogenase family member (acdh-2) (acdh-2) mRNA, complete cds Length = 1500 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 tggatcgagatcatgaaggag 357 ||||||||||||||||||||| Sbjct: 648 tggatcgagatcatgaaggag 668
>gb|AC139638.14| Mus musculus chromosome 10, clone RP24-208F10, complete sequence Length = 154570 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 gaaagagataaagaagacaa 487 |||||||||||||||||||| Sbjct: 89817 gaaagagataaagaagacaa 89836
>ref|XM_723241.1| Plasmodium yoelii yoelii str. 17XNL n(2),n(2)-dimethylguanosine tRNA methyltransferase (PY07448) partial mRNA Length = 1587 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 aaattcaaaaggctatgatagtga 469 ||||||||| |||||||||||||| Sbjct: 744 aaattcaaatggctatgatagtga 767
>ref|XM_719718.1| Plasmodium yoelii yoelii str. 17XNL N2,N2-dimethylguanosine tRNA methyltransferase (PY04503) partial mRNA Length = 1875 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 aaattcaaaaggctatgatagtga 469 ||||||||| |||||||||||||| Sbjct: 195 aaattcaaatggctatgatagtga 218
>emb|CR675084.3|CNS0FJV6 Tetraodon nigroviridis full-length cDNA Length = 431 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tgtgagagtaaatgaagtgc 114 |||||||||||||||||||| Sbjct: 220 tgtgagagtaaatgaagtgc 239
>emb|CR670405.2|CNS0FG97 Tetraodon nigroviridis full-length cDNA Length = 437 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tgtgagagtaaatgaagtgc 114 |||||||||||||||||||| Sbjct: 226 tgtgagagtaaatgaagtgc 245
>ref|XM_674972.1| Plasmodium berghei strain ANKA N2,N2-dimethylguanosine tRNA methyltransferase (PB000555.02.0) partial mRNA Length = 2436 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 aaattcaaaaggctatgatagtga 469 ||||||||| |||||||||||||| Sbjct: 744 aaattcaaatggctatgatagtga 767
>gb|AC135396.32| Medicago truncatula clone mth2-33o18, complete sequence Length = 132211 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 atagggagaggagttatgat 224 |||||||||||||||||||| Sbjct: 110238 atagggagaggagttatgat 110257
>gb|BC057283.1| Homo sapiens PDZ domain containing 2, mRNA (cDNA clone IMAGE:5273308) Length = 5866 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 gctatgatagtgaaagagat 476 |||||||||||||||||||| Sbjct: 2168 gctatgatagtgaaagagat 2187
>emb|AL139420.13| Human DNA sequence from clone RP4-712E4 on chromosome 1p11.1-13.2 Contains the 5' end of the TBX15 gene for T-box 15, a novel gene, the 3' end of the WARS2 gene for tryptophanyl tRNA synthetase 2 (mitochondrial), the 3' end of a novel gene and a CpG island, complete sequence Length = 122122 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 468 gaaagagataaagaagacaaggaa 491 |||||||| ||||||||||||||| Sbjct: 113566 gaaagagaaaaagaagacaaggaa 113589
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tggatcgagatcatgaagga 356 |||||||||||||||||||| Sbjct: 265340 tggatcgagatcatgaagga 265321
>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10 Length = 348450 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 atcgagatcatgaaggagat 359 |||||||||||||||||||| Sbjct: 168016 atcgagatcatgaaggagat 168035
>gb|AC025458.5| Homo sapiens chromosome 5 clone CTD-2206G10, complete sequence Length = 119760 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 gctatgatagtgaaagagat 476 |||||||||||||||||||| Sbjct: 109483 gctatgatagtgaaagagat 109464
>gb|L78826.1|MSGB42CS Mycobacterium leprae cosmid B42 DNA sequence Length = 22781 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 atcgagatcatgaaggagat 359 |||||||||||||||||||| Sbjct: 16794 atcgagatcatgaaggagat 16775
>gb|AC151598.2| Medicago truncatula chromosome 2 BAC clone mte1-49g8, complete sequence Length = 143328 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 atagggagaggagttatgat 224 |||||||||||||||||||| Sbjct: 82710 atagggagaggagttatgat 82691
>gb|AC010469.7|AC010469 Homo sapiens chromosome 5 clone CTD-2290C23, complete sequence Length = 120825 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 gctatgatagtgaaagagat 476 |||||||||||||||||||| Sbjct: 119665 gctatgatagtgaaagagat 119684
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 ccgacgagatcctgtaagagatgg 178 |||||||||||||||| ||||||| Sbjct: 5660479 ccgacgagatcctgtacgagatgg 5660456
>gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome 17, complete sequence Length = 214723 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aaagagataaagaagacaag 488 |||||||||||||||||||| Sbjct: 144097 aaagagataaagaagacaag 144116
>gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.1018_N_14, complete sequence Length = 185116 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 atggcaagcaaataggtaat 89 |||||||||||||||||||| Sbjct: 162862 atggcaagcaaataggtaat 162881
>gb|U00019.1|U00019 Mycobacterium leprae cosmid B2235 Length = 36033 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 atcgagatcatgaaggagat 359 |||||||||||||||||||| Sbjct: 15430 atcgagatcatgaaggagat 15411 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,975,232 Number of Sequences: 3902068 Number of extensions: 3975232 Number of successful extensions: 75397 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75319 Number of HSP's gapped (non-prelim): 72 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)