ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15h13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZSWM5_MOUSE (Q80TC6) Zinc finger SWIM domain-containing protein 5 31 3.8
2CP8B1_RABIT (O02766) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVII... 30 8.5
3NFT1_CAEEL (O76463) Nitrilase and fragile histidine triad fusion... 30 8.5

>ZSWM5_MOUSE (Q80TC6) Zinc finger SWIM domain-containing protein 5|
          Length = 1188

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 232 RK*LLSPPPFSKRKRTSSWPT 170
           R+ LLSPPP S  KR  SWP+
Sbjct: 7   REELLSPPPISPAKRLCSWPS 27



to top

>CP8B1_RABIT (O02766) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVIIIB1)|
           (7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase)
           (Sterol 12-alpha-hydroxylase)
           (7-alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase)
          Length = 499

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 PTEFRVDRVLQPFDSAKFNFTKVGQEEVLFRFENGGGDS 221
           PT F+ DR L P  S K +F K GQ+   +    G G S
Sbjct: 398 PTTFKYDRFLNPNGSRKVDFYKAGQKIHHYTMPWGSGVS 436



to top

>NFT1_CAEEL (O76463) Nitrilase and fragile histidine triad fusion protein|
           NitFhit [Includes: Bis(5'-adenosyl)-triphosphatase (EC
           3.6.1.29) (Diadenosine 5',5'''-P1,P3-triphosphate
           hydrolase) (Dinucleosidetriphosphatase) (AP3A hydrolase)
           (AP3Aase); Nitrilas
          Length = 440

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 201 ENGGGDSSYFLENAPSIEGDRAPSVVAINVSPIEYGHVLLIP-RVLDRLPQQIDPES 368
           E GG   + F   A  I      S V +N+ P+  GHVL+ P RV+ RL    D E+
Sbjct: 295 ETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAET 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,606,956
Number of Sequences: 219361
Number of extensions: 2195584
Number of successful extensions: 5730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5712
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top