ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15h13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, comple... 422 e-115
2gb|AY105327.1| Zea mays PCO147247 mRNA sequence 345 1e-91
3dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
4dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 172 9e-40
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 172 9e-40
7emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 172 9e-40
8ref|NM_118819.2| Arabidopsis thaliana VTC2 (VITAMIN C DEFECTIVE ... 125 2e-25
9gb|AY056134.1| Arabidopsis thaliana unknown protein (At4g26850) ... 125 2e-25
10gb|AY093138.1| Arabidopsis thaliana putative protein (At4g26850)... 125 2e-25
11gb|BT006589.1| Arabidopsis thaliana At4g26850 mRNA, complete cds 125 2e-25
12emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, ... 107 5e-20
13emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, ... 107 5e-20
14emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, B... 107 5e-20
15gb|AF508793.1| Arabidopsis thaliana VTC2 (VTC2) gene, complete cds 100 1e-17
16emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o... 74 7e-10
17gb|AY570979.1| Xerophyta humilis clone HC437 unknown mRNA 70 1e-08
18gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence 64 6e-07
19ref|NM_124894.4| Arabidopsis thaliana unknown protein AT5G55120 ... 58 4e-05
20ref|NM_190314.1| Oryza sativa (japonica cultivar-group), predic... 58 4e-05
21gb|BT016612.1| Zea mays clone Contig445 mRNA sequence 58 4e-05
22gb|AY091285.1| Arabidopsis thaliana unknown protein (At5g55120) ... 58 4e-05
23gb|AY063788.1| Arabidopsis thaliana unknown protein (At5g55120) ... 58 4e-05
24emb|BX831350.1|CNS0A1O4 Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
25emb|BX829969.1|CNS0A043 Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
26emb|BX831865.1|CNS09ZT1 Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
27emb|BX831807.1|CNS09ZUD Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
28emb|BX830641.1|CNS09ZZY Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
29dbj|AK111215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
30dbj|AK100274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
31dbj|AB010071.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 54 6e-04
32dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
34dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
35dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
36gb|AY489190.1| Capsicum annuum putative At4g26850-like protein ... 48 0.037
37emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment ... 46 0.15
38gb|AE009937.1|AE009937 Pyrobaculum aerophilum strain IM2 section... 46 0.15
39ref|XM_676408.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.3
40gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 42 2.3
41gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome ... 42 2.3
42gb|AF153765.1|AF153765 Emericella nidulans S-adenosylmethionine ... 42 2.3
43emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 2.3
44gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosom... 42 2.3
45gb|BC064388.1| Homo sapiens lactate dehydrogenase C, transcript ... 40 9.1
46ref|NM_017448.1| Homo sapiens lactate dehydrogenase C (LDHC), tr... 40 9.1
47ref|NM_002301.2| Homo sapiens lactate dehydrogenase C (LDHC), tr... 40 9.1
48gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, com... 40 9.1
49gb|AC140109.4| Mus musculus BAC clone RP24-156A17 from chromosom... 40 9.1
50gb|AC134434.4| Mus musculus BAC clone RP24-420E8 from chromosome... 40 9.1
51ref|XM_845849.1| PREDICTED: Canis familiaris similar to BTB (POZ... 40 9.1
52gb|U41107.1| Caenorhabditis elegans cosmid F55C12, complete sequ... 40 9.1
53gb|BC019249.2| Homo sapiens lactate dehydrogenase C, mRNA (cDNA ... 40 9.1
54emb|AL355315.18| Human DNA sequence from clone RP11-548K23 on ch... 40 9.1
55gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, com... 40 9.1
56emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D... 40 9.1
57gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome... 40 9.1
58emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.1
59emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 9.1
60gb|AY286300.1| Homo sapiens lactate dehydrogenase C (LDHC) mRNA,... 40 9.1
61emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 i... 40 9.1
62emb|AL662836.7| Mouse DNA sequence from clone RP23-313L19 on chr... 40 9.1
63gb|AC010011.5| Drosophila melanogaster 3L BAC RP98-17D14 (Roswel... 40 9.1
64ref|XM_936572.1| PREDICTED: Homo sapiens suppressor of cytokine ... 40 9.1
65gb|AF085249.1|AF085249 Gallus gallus calcium/calmodulin-dependen... 40 9.1
66dbj|AB169182.1| Macaca fascicularis testis cDNA, clone: QtsA-178... 40 9.1
67gb|AC160960.5| Mus musculus BAC clone RP24-230O19 from chromosom... 40 9.1
68gb|AF401097.1| Homo sapiens lactate dehydrogenase C (LDHC) mRNA,... 40 9.1
69gb|AC124789.12| Homo sapiens chromosome 17, clone RP11-923C2, co... 40 9.1
70ref|NM_204294.1| Gallus gallus calcium/calmodulin-dependent prot... 40 9.1
71ref|XM_573834.1| PREDICTED: Rattus norvegicus similar to OTTHUMP... 40 9.1
72gb|AY892969.1| Synthetic construct Homo sapiens clone FLH141605.... 40 9.1
73gb|AY890512.1| Synthetic construct Homo sapiens clone FLH141609.... 40 9.1
74dbj|AK058181.1| Homo sapiens cDNA FLJ25452 fis, clone TST08814, ... 40 9.1
75gb|BC090043.1| Homo sapiens lactate dehydrogenase C, transcript ... 40 9.1
76gb|AE003596.5| Drosophila melanogaster chromosome 3L, section 77... 40 9.1
77gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, c... 40 9.1
78ref|NM_014598.1| Homo sapiens suppressor of cytokine signaling 7... 40 9.1
79gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, comple... 40 9.1
80gb|AC167974.3| Mus musculus BAC clone RP23-314B11 from chromosom... 40 9.1
81emb|AL772288.12| Mouse DNA sequence from clone RP23-360H6 on chr... 40 9.1
82gb|J02938.1|HUMLDHX Human testis-specific lactate dehydrogenase ... 40 9.1
83gb|U13680.1|HSU13680 Human lactate dehydrogenase-C (LDH-C) mRNA,... 40 9.1

>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence
          Length = 1732

 Score =  422 bits (213), Expect = e-115
 Identities = 525/629 (83%)
 Strand = Plus / Plus

                                                                        
Query: 36   accaaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctc 95
            |||||||| || |||||| | ||||||||||||||||| || || ||||| |||||||| 
Sbjct: 430  accaaggtcatccctggcaaccttgggtttgttgcacaactcaatgaagggcgccacctt 489

                                                                        
Query: 96   aagaagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaag 155
            ||||||||||| || ||||| ||||| |||||||||||||||||||| ||  ||||||||
Sbjct: 490  aagaagcgccctactgagtttcgtgtggaccgtgtgctccagccatttgaccctgccaag 549

                                                                        
Query: 156  ttcaacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtggc 215
            ||||| |||||||| ||||||||||| |||||||| || |  ||||||||||||| ||| 
Sbjct: 550  ttcaatttcaccaaagttggccaggaagaggttcttttccaatttgagaatggtgatggt 609

                                                                        
Query: 216  gacagcagctatttccttgaaaatgccccaagcattgagggtgaccgtgctcccagcgtt 275
            ||   ||||||||||||  |  | || |||| |||||  | ||| |||||||| |  |||
Sbjct: 610  gatgacagctatttcctgaatgacgctccaatcattgctgttgatcgtgctccaaatgtt 669

                                                                        
Query: 276  gttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtcctt 335
            ||||| |||||||||||||| ||||| || || ||||||||||||||||| ||||| || 
Sbjct: 670  gttgctatcaatgtgagcccaattgaatatggacatgtgcttctcattcctcgtgttctg 729

                                                                        
Query: 336  gaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagct 395
            ||||||||||||||| | |||||||| || || ||| |||||||||| || |||||||||
Sbjct: 730  gaccgcctgcctcagaagattgatccagagagtttcttgcttgcactgcaaatggcagct 789

                                                                        
Query: 396  gaggctgcaagcccatactttaggcttggttacaacagcttgggtgcctttgccaccatc 455
            ||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 790  gaggcagctagcccatacttcaggcttggttacaatagcttgggtgcctttgccaccatc 849

                                                                        
Query: 456  aatcatctccacttccaggcatactacctgtcagtaccttttcctgttgagaaggcgcct 515
            ||||| |||||||| |||||||||||| ||||||| ||||| |||||||| |||||  ||
Sbjct: 850  aatcacctccactttcaggcatactacttgtcagtgcctttccctgttgaaaaggcagct 909

                                                                        
Query: 516  accaagaagatcccccttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactg 575
            ||| | |||||||| ||| |  ||    |  |||| | ||||||||  ||||| || |||
Sbjct: 910  acccacaagatccctctttctgaggacacaatgaagaatggagtgaccgtgtccaagctg 969

                                                                        
Query: 576  acaaatttccccgtgagaggtctagtgtttgagagagggaacacactgaaggatttggct 635
            | |||||  || |||||||| || || |||||| |||||||||||||| | ||  |||| 
Sbjct: 970  ataaattatcctgtgagaggcctggtatttgagggagggaacacactggacgacctggca 1029

                                         
Query: 636  gatgtggttaccaacgcttgcatttggct 664
             |||||||| |||| ||||||||||||||
Sbjct: 1030 aatgtggtttccaatgcttgcatttggct 1058



to top

>gb|AY105327.1| Zea mays PCO147247 mRNA sequence
          Length = 1954

 Score =  345 bits (174), Expect = 1e-91
 Identities = 414/494 (83%)
 Strand = Plus / Plus

                                                                        
Query: 36   accaaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctc 95
            |||||||| ||||||||| | ||||||||||||||||| || || ||||| ||||| || 
Sbjct: 688  accaaggtcattcctggcaaccttgggtttgttgcacaactcaatgaagggcgccatctt 747

                                                                        
Query: 96   aagaagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaag 155
            ||||||||||| || ||||| ||||| ||||||||||||||||| || ||  ||||||| 
Sbjct: 748  aagaagcgccctactgagtttcgtgtggaccgtgtgctccagccgtttgaccctgccaaa 807

                                                                        
Query: 156  ttcaacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtggc 215
            ||||| ||||| || ||||||||||| ||||||||||| |  ||||||||| ||||||| 
Sbjct: 808  ttcaatttcacaaaagttggccaggaagaggttctcttccaatttgagaatagtggtggt 867

                                                                        
Query: 216  gacagcagctatttccttgaaaatgccccaagcattgagggtgaccgtgctcccagcgtt 275
            ||   ||||||||||||  | || || |||| |||||  | ||| || ||||| |  |||
Sbjct: 868  gatgacagctatttcctgaacaacgctccaatcattgctgttgatcgggctccaaatgtt 927

                                                                        
Query: 276  gttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtcctt 335
             |||| |||||||| ||||| ||||| || || ||||||||||||||||| ||||| || 
Sbjct: 928  attgctatcaatgtaagcccaattgaatatggacatgtgcttctcattcctcgtgttctg 987

                                                                        
Query: 336  gaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagct 395
            |||||||||||||||   |||||||| || |||||| |||||||||| || |||||||| 
Sbjct: 988  gaccgcctgcctcagaggattgatccagagagcttcttgcttgcactgcaaatggcagcc 1047

                                                                        
Query: 396  gaggctgcaagcccatactttaggcttggttacaacagcttgggtgcctttgccaccatc 455
            ||||  |  ||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 1048 gagggaggtagcccatacttcaggcttggttacaatagcttgggtgcgtttgccaccatc 1107

                                                                        
Query: 456  aatcatctccacttccaggcatactacctgtcagtaccttttcctgttgagaaggcgcct 515
            ||||| |||||||| ||||| |||||| ||||||| ||||| ||||||||||||||  ||
Sbjct: 1108 aatcacctccactttcaggcgtactacttgtcagtgcctttccctgttgagaaggcagct 1167

                          
Query: 516  accaagaagatccc 529
            ||| | ||||||||
Sbjct: 1168 acccacaagatccc 1181



to top

>dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M14, full
            insert sequence
          Length = 2088

 Score =  214 bits (108), Expect = 3e-52
 Identities = 321/392 (81%)
 Strand = Plus / Plus

                                                                        
Query: 273  gttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtc 332
            ||||||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||||| 
Sbjct: 964  gttgttgcaatcaatgtaagcccaattgaatatggccatgttcttctcattccccgtgta 1023

                                                                        
Query: 333  cttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggca 392
            || |||||||||||||||   ||||| |  || |||||| |||||||||| |||||||| 
Sbjct: 1024 ctggaccgcctgcctcagaggattgaccaggagagcttcttgcttgcactgcacatggct 1083

                                                                        
Query: 393  gctgaggctgcaagcccatactttaggcttggttacaacagcttgggtgcctttgccacc 452
            ||||| || |||||||||||||| |||||||| || || || |||||||||||||| |||
Sbjct: 1084 gctgaagccgcaagcccatacttcaggcttggctataatagtttgggtgcctttgcaacc 1143

                                                                        
Query: 453  atcaatcatctccacttccaggcatactacctgtcagtaccttttcctgttgagaaggcg 512
            ||||| || |||||||| |||||||||||| || |||| ||||| |||||||||||||| 
Sbjct: 1144 atcaaccacctccactttcaggcatactacttgacagtgcctttccctgttgagaaggca 1203

                                                                        
Query: 513  cctaccaagaagatcccccttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaa 572
             ||||||||| |||   ||||||  || |  |  ||||||||||||| |||||||| || 
Sbjct: 1204 gctaccaagaggattttccttgctgagggcacaatgaatagtggagtaaaggtgtccaag 1263

                                                                        
Query: 573  ctgacaaatttccccgtgagaggtctagtgtttgagagagggaacacactgaaggatttg 632
            ||||  || | ||| ||||| || || || |||||| |||| ||| ||||||  ||| ||
Sbjct: 1264 ctgatgaactaccctgtgaggggactggtttttgagggaggcaactcactgagcgatctg 1323

                                            
Query: 633  gctgatgtggttaccaacgcttgcatttggct 664
            ||  |||||||| ||| |||||| || |||||
Sbjct: 1324 gccaatgtggtttccagcgcttgtatctggct 1355



 Score =  172 bits (87), Expect = 9e-40
 Identities = 156/179 (87%)
 Strand = Plus / Plus

                                                                       
Query: 36  accaaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctc 95
           |||||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||
Sbjct: 727 accaaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctc 786

                                                                       
Query: 96  aagaagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaag 155
           ||||||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||
Sbjct: 787 aagaagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaag 846

                                                                      
Query: 156 ttcaacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 214
           |||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||
Sbjct: 847 ttcaacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 905



to top

>dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G08, full
           insert sequence
          Length = 1295

 Score =  214 bits (108), Expect = 3e-52
 Identities = 321/392 (81%)
 Strand = Plus / Plus

                                                                       
Query: 273 gttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtc 332
           ||||||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||||| 
Sbjct: 206 gttgttgcaatcaatgtaagcccaattgaatatggccatgttcttctcattccccgtgta 265

                                                                       
Query: 333 cttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggca 392
           || |||||||||||||||   ||||| |  || |||||| |||||||||| |||||||| 
Sbjct: 266 ctggaccgcctgcctcagaggattgaccaggagagcttcttgcttgcactgcacatggct 325

                                                                       
Query: 393 gctgaggctgcaagcccatactttaggcttggttacaacagcttgggtgcctttgccacc 452
           ||||| || |||||||||||||| |||||||| || || || |||||||||||||| |||
Sbjct: 326 gctgaagccgcaagcccatacttcaggcttggctataatagtttgggtgcctttgcaacc 385

                                                                       
Query: 453 atcaatcatctccacttccaggcatactacctgtcagtaccttttcctgttgagaaggcg 512
           ||||| || |||||||| |||||||||||| || |||| ||||| |||||||||||||| 
Sbjct: 386 atcaaccacctccactttcaggcatactacttgacagtgcctttccctgttgagaaggca 445

                                                                       
Query: 513 cctaccaagaagatcccccttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaa 572
            ||||||||| |||   ||||||  || |  |  ||||||||||||| |||||||| || 
Sbjct: 446 gctaccaagaggattttccttgctgagggcacaatgaatagtggagtaaaggtgtccaag 505

                                                                       
Query: 573 ctgacaaatttccccgtgagaggtctagtgtttgagagagggaacacactgaaggatttg 632
           ||||  || | ||| ||||| || || || |||||| |||| ||| ||||||  ||| ||
Sbjct: 506 ctgatgaactaccctgtgaggggactggtttttgagggaggcaactcactgagcgatctg 565

                                           
Query: 633 gctgatgtggttaccaacgcttgcatttggct 664
           ||  |||||||| ||| |||||| || |||||
Sbjct: 566 gccaatgtggtttccagcgcttgtatctggct 597



 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                       
Query: 81  gaaggccgccacctcaagaagcgcccaaccgagttccgtgttgaccgtgtgctccagcca 140
           ||||| |||||||||||||||||||| || || ||||| || ||||||||||| || |||
Sbjct: 14  gaaggacgccacctcaagaagcgccctactgaattccgcgtggaccgtgtgcttcaacca 73

                                                                       
Query: 141 ttcgattctgccaagttcaacttcaccaaggttggccaggaggaggttctctttcgcttt 200
           || ||| |||||||||||||||||||||| ||||||||||||||||| ||||| |  |||
Sbjct: 74  tttgatgctgccaagttcaacttcaccaaagttggccaggaggaggtgctcttccaattt 133

                         
Query: 201 gagaatggtggtgg 214
           ||||||||||||||
Sbjct: 134 gagaatggtggtgg 147



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  172 bits (87), Expect = 9e-40
 Identities = 156/179 (87%)
 Strand = Plus / Minus

                                                                           
Query: 36      accaaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctc 95
               |||||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||
Sbjct: 4534192 accaaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctc 4534133

                                                                           
Query: 96      aagaagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaag 155
               ||||||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||
Sbjct: 4534132 aagaagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaag 4534073

                                                                          
Query: 156     ttcaacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 214
               |||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||
Sbjct: 4534072 ttcaacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 4534014



 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/184 (84%)
 Strand = Plus / Minus

                                                                           
Query: 291     agccctattgagtacggtcatgtgcttctcattccacgtgtccttgaccgcctgcctcag 350
               ||||| ||||| || || ||||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 4533852 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 4533793

                                                                           
Query: 351     caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 410
                  ||||| |  || |||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct: 4533792 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 4533733

                                                                           
Query: 411     tactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttc 470
               ||||| |||||||| || || || |||||||||||||| |||||||| || |||||||| 
Sbjct: 4533732 tacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctccacttt 4533673

                   
Query: 471     cagg 474
               ||||
Sbjct: 4533672 cagg 4533669



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 153/194 (78%)
 Strand = Plus / Minus

                                                                           
Query: 471     caggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaagatcccc 530
               |||||||||||| || |||| ||||| ||||||||||||||  ||||||||| |||   |
Sbjct: 4533238 caggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagaggattttc 4533179

                                                                           
Query: 531     cttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttccccgtg 590
               |||||  || |  |  ||||||||||||| |||||||| || ||||  || | ||| |||
Sbjct: 4533178 cttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactaccctgtg 4533119

                                                                           
Query: 591     agaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttaccaac 650
               || || || || |||||| |||| ||| ||||||  ||| ||||  |||||||| ||| |
Sbjct: 4533118 aggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggtttccagc 4533059

                             
Query: 651     gcttgcatttggct 664
               ||||| || |||||
Sbjct: 4533058 gcttgtatctggct 4533045



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  172 bits (87), Expect = 9e-40
 Identities = 156/179 (87%)
 Strand = Plus / Minus

                                                                           
Query: 36      accaaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctc 95
               |||||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||
Sbjct: 4534173 accaaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctc 4534114

                                                                           
Query: 96      aagaagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaag 155
               ||||||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||
Sbjct: 4534113 aagaagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaag 4534054

                                                                          
Query: 156     ttcaacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 214
               |||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||
Sbjct: 4534053 ttcaacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 4533995



 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/184 (84%)
 Strand = Plus / Minus

                                                                           
Query: 291     agccctattgagtacggtcatgtgcttctcattccacgtgtccttgaccgcctgcctcag 350
               ||||| ||||| || || ||||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 4533833 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 4533774

                                                                           
Query: 351     caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 410
                  ||||| |  || |||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct: 4533773 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 4533714

                                                                           
Query: 411     tactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttc 470
               ||||| |||||||| || || || |||||||||||||| |||||||| || |||||||| 
Sbjct: 4533713 tacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctccacttt 4533654

                   
Query: 471     cagg 474
               ||||
Sbjct: 4533653 cagg 4533650



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 153/194 (78%)
 Strand = Plus / Minus

                                                                           
Query: 471     caggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaagatcccc 530
               |||||||||||| || |||| ||||| ||||||||||||||  ||||||||| |||   |
Sbjct: 4533219 caggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagaggattttc 4533160

                                                                           
Query: 531     cttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttccccgtg 590
               |||||  || |  |  ||||||||||||| |||||||| || ||||  || | ||| |||
Sbjct: 4533159 cttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactaccctgtg 4533100

                                                                           
Query: 591     agaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttaccaac 650
               || || || || |||||| |||| ||| ||||||  ||| ||||  |||||||| ||| |
Sbjct: 4533099 aggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggtttccagc 4533040

                             
Query: 651     gcttgcatttggct 664
               ||||| || |||||
Sbjct: 4533039 gcttgtatctggct 4533026



to top

>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score =  172 bits (87), Expect = 9e-40
 Identities = 156/179 (87%)
 Strand = Plus / Plus

                                                                         
Query: 36    accaaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctc 95
             |||||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||
Sbjct: 70586 accaaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctc 70645

                                                                         
Query: 96    aagaagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaag 155
             ||||||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||
Sbjct: 70646 aagaagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaag 70705

                                                                        
Query: 156   ttcaacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 214
             |||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||
Sbjct: 70706 ttcaacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 70764



 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/184 (84%)
 Strand = Plus / Plus

                                                                         
Query: 291   agccctattgagtacggtcatgtgcttctcattccacgtgtccttgaccgcctgcctcag 350
             ||||| ||||| || || ||||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 70926 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 70985

                                                                         
Query: 351   caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 410
                ||||| |  || |||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct: 70986 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 71045

                                                                         
Query: 411   tactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttc 470
             ||||| |||||||| || || || |||||||||||||| |||||||| || |||||||| 
Sbjct: 71046 tacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctccacttt 71105

                 
Query: 471   cagg 474
             ||||
Sbjct: 71106 cagg 71109



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                         
Query: 471   caggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaagatcccc 530
             |||||||||||| || |||| ||||| ||||||||||||||  ||||||||| |||   |
Sbjct: 71540 caggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagaggattttc 71599

                                                                         
Query: 531   cttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttccccgtg 590
             |||||  || |  |  ||||||||||||| |||||||| || ||||  || | ||| |||
Sbjct: 71600 cttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactaccctgtg 71659

                                                                         
Query: 591   agaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttaccaac 650
             || || || || |||||| |||| ||| ||||||  ||| ||||  |||||||| ||| |
Sbjct: 71660 aggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggtttccagc 71719

                           
Query: 651   gcttgcatttggct 664
             ||||| || |||||
Sbjct: 71720 gcttgtatctggct 71733



to top

>ref|NM_118819.2| Arabidopsis thaliana VTC2 (VITAMIN C DEFECTIVE 2) AT4G26850 (VTC2)
            mRNA, complete cds
          Length = 2084

 Score =  125 bits (63), Expect = 2e-25
 Identities = 174/211 (82%)
 Strand = Plus / Plus

                                                                        
Query: 265  ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
            ||||||| |||||||| |||||||| || || || ||||| || |||||||| || ||||
Sbjct: 1015 ctcccagtgttgttgccatcaatgttagtccgatagagtatggccatgtgctgctgattc 1074

                                                                        
Query: 325  cacgtgtccttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactac 384
            | ||||| |||||| || |||||||    || ||||   ||||| |  |||||||| | |
Sbjct: 1075 ctcgtgttcttgactgcttgcctcaaaggatcgatcacaaaagccttttgcttgcagttc 1134

                                                                        
Query: 385  acatggcagctgaggctgcaagcccatactttaggcttggttacaacagcttgggtgcct 444
            ||||||| ||||||||||| |  |||||||| || || |||||||||||||||||||| |
Sbjct: 1135 acatggctgctgaggctgctaatccatacttcagactcggttacaacagcttgggtgctt 1194

                                           
Query: 445  ttgccaccatcaatcatctccacttccaggc 475
            ||||||| ||||||||||||||||| |||||
Sbjct: 1195 ttgccactatcaatcatctccactttcaggc 1225



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 66  gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
           ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 819 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 874



to top

>gb|AY056134.1| Arabidopsis thaliana unknown protein (At4g26850) mRNA, complete cds
          Length = 2097

 Score =  125 bits (63), Expect = 2e-25
 Identities = 174/211 (82%)
 Strand = Plus / Plus

                                                                        
Query: 265  ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
            ||||||| |||||||| |||||||| || || || ||||| || |||||||| || ||||
Sbjct: 1013 ctcccagtgttgttgccatcaatgttagtccgatagagtatggccatgtgctgctgattc 1072

                                                                        
Query: 325  cacgtgtccttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactac 384
            | ||||| |||||| || |||||||    || ||||   ||||| |  |||||||| | |
Sbjct: 1073 ctcgtgttcttgactgcttgcctcaaaggatcgatcacaaaagccttttgcttgcagttc 1132

                                                                        
Query: 385  acatggcagctgaggctgcaagcccatactttaggcttggttacaacagcttgggtgcct 444
            ||||||| ||||||||||| |  |||||||| || || |||||||||||||||||||| |
Sbjct: 1133 acatggctgctgaggctgctaatccatacttcagactcggttacaacagcttgggtgctt 1192

                                           
Query: 445  ttgccaccatcaatcatctccacttccaggc 475
            ||||||| ||||||||||||||||| |||||
Sbjct: 1193 ttgccactatcaatcatctccactttcaggc 1223



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 66  gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
           ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 817 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 872



to top

>gb|AY093138.1| Arabidopsis thaliana putative protein (At4g26850) mRNA, complete cds
          Length = 2045

 Score =  125 bits (63), Expect = 2e-25
 Identities = 174/211 (82%)
 Strand = Plus / Plus

                                                                        
Query: 265  ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
            ||||||| |||||||| |||||||| || || || ||||| || |||||||| || ||||
Sbjct: 1013 ctcccagtgttgttgccatcaatgttagtccgatagagtatggccatgtgctgctgattc 1072

                                                                        
Query: 325  cacgtgtccttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactac 384
            | ||||| |||||| || |||||||    || ||||   ||||| |  |||||||| | |
Sbjct: 1073 ctcgtgttcttgactgcttgcctcaaaggatcgatcacaaaagccttttgcttgcagttc 1132

                                                                        
Query: 385  acatggcagctgaggctgcaagcccatactttaggcttggttacaacagcttgggtgcct 444
            ||||||| ||||||||||| |  |||||||| || || |||||||||||||||||||| |
Sbjct: 1133 acatggctgctgaggctgctaatccatacttcagactcggttacaacagcttgggtgctt 1192

                                           
Query: 445  ttgccaccatcaatcatctccacttccaggc 475
            ||||||| ||||||||||||||||| |||||
Sbjct: 1193 ttgccactatcaatcatctccactttcaggc 1223



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 66  gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
           ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 817 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 872



to top

>gb|BT006589.1| Arabidopsis thaliana At4g26850 mRNA, complete cds
          Length = 1329

 Score =  125 bits (63), Expect = 2e-25
 Identities = 174/211 (82%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           ||||||| |||||||| |||||||| || || || ||||| || |||||||| || ||||
Sbjct: 512 ctcccagtgttgttgccatcaatgttagtccgatagagtatggccatgtgctgctgattc 571

                                                                       
Query: 325 cacgtgtccttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactac 384
           | ||||| |||||| || |||||||    || ||||   ||||| |  |||||||| | |
Sbjct: 572 ctcgtgttcttgactgcttgcctcaaaggatcgatcacaaaagccttttgcttgcagttc 631

                                                                       
Query: 385 acatggcagctgaggctgcaagcccatactttaggcttggttacaacagcttgggtgcct 444
           ||||||| ||||||||||| |  |||||||| || || |||||||||||||||||||| |
Sbjct: 632 acatggctgctgaggctgctaatccatacttcagactcggttacaacagcttgggtgctt 691

                                          
Query: 445 ttgccaccatcaatcatctccacttccaggc 475
           ||||||| ||||||||||||||||| |||||
Sbjct: 692 ttgccactatcaatcatctccactttcaggc 722



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 66  gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
           ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 316 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 371



to top

>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66
          Length = 198372

 Score =  107 bits (54), Expect = 5e-20
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                        
Query: 373  tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 432
            |||||||| | |||||||| ||||||||||| |  |||||||| || || ||||||||||
Sbjct: 4004 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 3945

                                                      
Query: 433  gcttgggtgcctttgccaccatcaatcatctccacttccagg 474
            |||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 3944 gcttgggtgcttttgccactatcaatcatctccactttcagg 3903



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 66   gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
            ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 4402 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 4347



to top

>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65
          Length = 198320

 Score =  107 bits (54), Expect = 5e-20
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                          
Query: 373    tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 432
              |||||||| | |||||||| ||||||||||| |  |||||||| || || ||||||||||
Sbjct: 197324 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 197265

                                                        
Query: 433    gcttgggtgcctttgccaccatcaatcatctccacttccagg 474
              |||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 197264 gcttgggtgcttttgccactatcaatcatctccactttcagg 197223



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 66     gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
              ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 197722 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 197667



to top

>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project)
          Length = 128574

 Score =  107 bits (54), Expect = 5e-20
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                         
Query: 373   tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 432
             |||||||| | |||||||| ||||||||||| |  |||||||| || || ||||||||||
Sbjct: 48161 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 48102

                                                       
Query: 433   gcttgggtgcctttgccaccatcaatcatctccacttccagg 474
             |||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 48101 gcttgggtgcttttgccactatcaatcatctccactttcagg 48060



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 66    gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
             ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 48559 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 48504



to top

>gb|AF508793.1| Arabidopsis thaliana VTC2 (VTC2) gene, complete cds
          Length = 1884

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 89/102 (87%)
 Strand = Plus / Plus

                                                                        
Query: 373  tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 432
            |||||||| | |||||||| ||||||||||| |  |||||||| || || | ||||||||
Sbjct: 997  tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcgattacaaca 1056

                                                      
Query: 433  gcttgggtgcctttgccaccatcaatcatctccacttccagg 474
            |||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 1057 gcttgggtgcttttgccactatcaatcatctccactttcagg 1098



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 66  gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 121
           ||||| ||||||||||| || || ||| | |||||| | ||||| |||||||||||
Sbjct: 599 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 654



to top

>emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE
          Length = 132030

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 100/121 (82%)
 Strand = Plus / Plus

                                                                          
Query: 354    attgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagcccatac 413
              ||||||| ||| |||||| |||||||||| |||||||||||||| ||||| |  ||||| 
Sbjct: 102197 attgatcatgagagcttcttgcttgcacttcacatggcagctgaagctgctaatccatat 102256

                                                                          
Query: 414    tttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccag 473
              ||| |  | |||||||||||| | ||||| ||||| || || || ||||| |||||||||
Sbjct: 102257 tttcgattgggttacaacagccttggtgcatttgcaactataaaccatcttcacttccag 102316

               
Query: 474    g 474
              |
Sbjct: 102317 g 102317



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 67     ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttc 116
              |||| ||||||||||| ||||| |||||||||||| | ||||| ||||||
Sbjct: 101810 ttgctcagcttaacgagggccgacacctcaagaagagaccaactgagttc 101859



to top

>gb|AY570979.1| Xerophyta humilis clone HC437 unknown mRNA
          Length = 1266

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 405 agcccatactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctc 464
           ||||||||||| ||||| |||||||||||  | ||||| ||||||||||| |||||||| 
Sbjct: 371 agcccatacttcaggctaggttacaacagtcttggtgcttttgccaccattaatcatctt 430

                      
Query: 465 cacttccaggc 475
           || ||||||||
Sbjct: 431 catttccaggc 441



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 152 caagttcaacttcaccaaggttggccaggaggaggttctctttcgctt 199
           ||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 121 caagttcaatttcaccaaggtcgggcaggaggaggttctcttccgctt 168



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 273 gttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgt 331
           |||||||||||||| |||||||| || ||||| || ||||| || || ||||| |||||
Sbjct: 239 gttgttgcaatcaacgtgagcccaatcgagtatggccatgtcctgcttattccccgtgt 297



to top

>gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence
          Length = 2013

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 80/96 (83%)
 Strand = Plus / Plus

                                                                        
Query: 413  ctttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttcca 472
            ||||||| | ||||| ||||| ||||| || ||||| ||||| || || |||||||||||
Sbjct: 1086 ctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttcca 1145

                                                
Query: 473  ggcatactacctgtcagtaccttttcctgttgagaa 508
            ||| || ||| ||||||| || ||||| ||||||||
Sbjct: 1146 ggcgtattacttgtcagtgccatttccagttgagaa 1181



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 274 ttgttgcaatcaatgtgagccctattgagta 304
           ||||||| |||||||||||||| ||||||||
Sbjct: 947 ttgttgctatcaatgtgagcccaattgagta 977



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 87  cgccacctcaagaagcgcccaaccgagtt 115
           |||||||| |||||||||||||| |||||
Sbjct: 763 cgccacctaaagaagcgcccaacagagtt 791



to top

>ref|NM_124894.4| Arabidopsis thaliana unknown protein AT5G55120 mRNA, complete cds
          Length = 1874

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 923 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 982

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 983 ctcgtgttcttga 995



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 67  ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 125
           |||| ||||| || ||||| || || ||||||||| | |||||||||||||||||||||
Sbjct: 719 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 777



to top

>ref|NM_190314.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1059

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 421 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccaggcatact 480
           |||||||||||||  ||||||  || || || ||||||||||||||||||||||| ||||
Sbjct: 473 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccaggcgtact 532

            
Query: 481 a 481
           |
Sbjct: 533 a 533



to top

>gb|BT016612.1| Zea mays clone Contig445 mRNA sequence
          Length = 1419

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 421 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccaggcatact 480
           ||||||| |||||| |||| | |||||| || ||||| || || ||||||||||||||||
Sbjct: 680 ttggttataacagcctgggcggctttgcaactatcaaccaccttcacttccaggcatact 739

                
Query: 481 acctg 485
           |||||
Sbjct: 740 acctg 744



to top

>gb|AY091285.1| Arabidopsis thaliana unknown protein (At5g55120) mRNA, complete cds
          Length = 1327

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 503 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 562

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 563 ctcgtgttcttga 575



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 67  ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 125
           |||| ||||| || ||||| || || ||||||||| | |||||||||||||||||||||
Sbjct: 299 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 357



to top

>gb|AY063788.1| Arabidopsis thaliana unknown protein (At5g55120) mRNA, complete cds
          Length = 1788

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 819 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 878

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 879 ctcgtgttcttga 891



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 67  ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 125
           |||| ||||| || ||||| || || ||||||||| | |||||||||||||||||||||
Sbjct: 615 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 673



to top

>emb|BX831350.1|CNS0A1O4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS80ZC01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1806

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 857 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 916

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 917 ctcgtgttcttga 929



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 93  ctcaagaagcgcccaaccgagttccgtgttgac 125
           ||||||||| | |||||||||||||||||||||
Sbjct: 680 ctcaagaagagaccaaccgagttccgtgttgac 712



to top

>emb|BX829969.1|CNS0A043 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB4ZG03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1694

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 808 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 867

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 868 ctcgtgttcttga 880



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 93  ctcaagaagcgcccaaccgagttccgtgttgac 125
           ||||||||| | |||||||||||||||||||||
Sbjct: 630 ctcaagaagagaccaaccgagttccgtgttgac 662



to top

>emb|BX831865.1|CNS09ZT1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH35ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1838

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 923 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 982

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 983 ctcgtgttcttga 995



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 93  ctcaagaagcgcccaaccgagttccgtgttgac 125
           ||||||||| | |||||||||||||||||||||
Sbjct: 745 ctcaagaagagaccaaccgagttccgtgttgac 777



to top

>emb|BX831807.1|CNS09ZUD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH30ZF08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1692

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 783 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 842

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 843 ctcgtgttcttga 855



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 93  ctcaagaagcgcccaaccgagttccgtgttgac 125
           ||||||||| | |||||||||||||||||||||
Sbjct: 605 ctcaagaagagaccaaccgagttccgtgttgac 637



to top

>emb|BX830641.1|CNS09ZZY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB9ZD04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1684

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 265 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 324
           |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || ||||
Sbjct: 771 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 830

                        
Query: 325 cacgtgtccttga 337
           | ||||| |||||
Sbjct: 831 ctcgtgttcttga 843



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 95  caagaagcgcccaaccgagttccgtgttgac 125
           ||||||| | |||||||||||||||||||||
Sbjct: 595 caagaagagaccaaccgagttccgtgttgac 625



to top

>dbj|AK111215.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-B04, full
           insert sequence
          Length = 2890

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                       
Query: 63  tttgttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgtt 122
           ||||| |||||||| ||||| |||||| ||  |||||||||||| || ||||||||||| 
Sbjct: 180 tttgtggcacagctgaacgagggccgctacagcaagaagcgccccacagagttccgtgtg 239

                                                            
Query: 123 gaccgtgtgctccagccattcgattctgccaagttcaacttcaccaagg 171
           ||||  ||| | ||| | |||||  |   ||||||||||||||||||||
Sbjct: 240 gaccaggtggtgcaggccttcgaccccaacaagttcaacttcaccaagg 288



to top

>dbj|AK100274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072P03, full
            insert sequence
          Length = 2135

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 421  ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccaggcatact 480
            |||||||||||||  ||||||  || || || ||||||||||||||||||||||| ||||
Sbjct: 1458 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccaggcgtact 1517

             
Query: 481  a 481
            |
Sbjct: 1518 a 1518



to top

>dbj|AB010071.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCO15
          Length = 82918

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 67    ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 125
             |||| ||||| || ||||| || || ||||||||| | |||||||||||||||||||||
Sbjct: 29107 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 29165



to top

>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1065G12
          Length = 165006

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 421   ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 474
             |||||||||||||  ||||||  || || || ||||||||||||||||||||||
Sbjct: 41227 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 41280



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 421      ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 474
                |||||||||||||  ||||||  || || || ||||||||||||||||||||||
Sbjct: 39239521 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 39239574



to top

>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0035F12
          Length = 153439

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 421    ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 474
              |||||||||||||  ||||||  || || || ||||||||||||||||||||||
Sbjct: 115281 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 115334



to top

>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551C06
          Length = 149829

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 421   ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 474
             |||||||||||||  ||||||  || || || ||||||||||||||||||||||
Sbjct: 20767 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 20820



to top

>gb|AY489190.1| Capsicum annuum putative At4g26850-like protein  mRNA, complete
           sequence
          Length = 589

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 152 caagttcaacttcaccaaggttggccaggaggaggttctctttc 195
           ||||||||||||||| |||||||| ||||| ||| | |||||||
Sbjct: 524 caagttcaacttcactaaggttggacaggaagagttgctctttc 567



to top

>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24
          Length = 295650

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 433   gcttgggtgcctttgccaccatc 455
             |||||||||||||||||||||||
Sbjct: 43619 gcttgggtgcctttgccaccatc 43641



to top

>gb|AE009937.1|AE009937 Pyrobaculum aerophilum strain IM2 section 192 of 201 of the complete
            genome
          Length = 11207

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 404  aagcccatactttaggcttggtt 426
            |||||||||||||||||||||||
Sbjct: 2161 aagcccatactttaggcttggtt 2183



to top

>ref|XM_676408.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8231.2), mRNA
          Length = 915

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 436 tgggtgcctttgccaccatca 456
           |||||||||||||||||||||
Sbjct: 536 tgggtgcctttgccaccatca 516



to top

>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    tggccaggaggaggttctctt 193
              |||||||||||||||||||||
Sbjct: 158745 tggccaggaggaggttctctt 158765



to top

>gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome 9, complete sequence
          Length = 224139

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 438    ggtgcctttgccaccatcaatcatc 462
              |||||||| ||||||||||||||||
Sbjct: 119319 ggtgccttagccaccatcaatcatc 119343



to top

>gb|AF153765.1|AF153765 Emericella nidulans S-adenosylmethionine decarboxylase mRNA,
           partial cds
          Length = 1086

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 436 tgggtgcctttgccaccatca 456
           |||||||||||||||||||||
Sbjct: 542 tgggtgcctttgccaccatca 522



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     ggtgaccgtgctcccagcgtt 275
               |||||||||||||||||||||
Sbjct: 2549882 ggtgaccgtgctcccagcgtt 2549862



to top

>gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosome 7, complete sequence
          Length = 198860

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    tggccaggaggaggttctctt 193
              |||||||||||||||||||||
Sbjct: 186600 tggccaggaggaggttctctt 186580



to top

>gb|BC064388.1| Homo sapiens lactate dehydrogenase C, transcript variant 1, mRNA
           (cDNA clone MGC:74967 IMAGE:5744600), complete cds
          Length = 1331

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 255 actgaaggatttggctgatg 274



to top

>ref|NM_017448.1| Homo sapiens lactate dehydrogenase C (LDHC), transcript variant 2,
           mRNA
          Length = 1171

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 178 actgaaggatttggctgatg 197



to top

>ref|NM_002301.2| Homo sapiens lactate dehydrogenase C (LDHC), transcript variant 1,
           mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 285 actgaaggatttggctgatg 304



to top

>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence
          Length = 170831

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    ccttttcctgttgagaaggc 511
              ||||||||||||||||||||
Sbjct: 132174 ccttttcctgttgagaaggc 132193



to top

>gb|AC140109.4| Mus musculus BAC clone RP24-156A17 from chromosome 3, complete sequence
          Length = 130716

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    ttaggcttggttacaacagc 434
              ||||||||||||||||||||
Sbjct: 110398 ttaggcttggttacaacagc 110379



to top

>gb|AC134434.4| Mus musculus BAC clone RP24-420E8 from chromosome 7, complete sequence
          Length = 214856

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    gaggtctagtgtttgagaga 611
              ||||||||||||||||||||
Sbjct: 123037 gaggtctagtgtttgagaga 123018



to top

>ref|XM_845849.1| PREDICTED: Canis familiaris similar to BTB (POZ) domain containing 11
            isoform 3, transcript variant 2 (LOC481292), mRNA
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  tgttgaccgtgtgctccagc 138
            ||||||||||||||||||||
Sbjct: 1075 tgttgaccgtgtgctccagc 1056



to top

>gb|U41107.1| Caenorhabditis elegans cosmid F55C12, complete sequence
          Length = 39086

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   catgtgcttctcattccacg 328
             ||||||||||||||||||||
Sbjct: 20793 catgtgcttctcattccacg 20812



to top

>gb|BC019249.2| Homo sapiens lactate dehydrogenase C, mRNA (cDNA clone
           IMAGE:4839028), partial cds
          Length = 1245

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 239 actgaaggatttggctgatg 258



to top

>emb|AL355315.18| Human DNA sequence from clone RP11-548K23 on chromosome 10 Contains the
              ANKRD2 gene for ankyrin repeat domain 2 (stretch responsive
              muscle), six novel genes, the gene for phosphatidylinositol
              4-kinase type II (PI4KII) and four CpG islands, complete
              sequence
          Length = 157193

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    caccaaggttggccaggagg 183
              ||||||||||||||||||||
Sbjct: 132404 caccaaggttggccaggagg 132423



to top

>gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, complete sequence
          Length = 173716

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    gagtacggtcatgtgcttct 319
              ||||||||||||||||||||
Sbjct: 155346 gagtacggtcatgtgcttct 155365



to top

>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains
             part of the gene for smooth muscle cell associated protein
             2 (SMAP2) or secreted modular calcium binding protein 2
             (SMOC2) and two CpG islands, complete sequence
          Length = 110603

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   tgtcagtaccttttcctgtt 503
             ||||||||||||||||||||
Sbjct: 69704 tgtcagtaccttttcctgtt 69723



to top

>gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome 1, complete sequence
          Length = 160562

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   ctttgccaccatcaatcatc 462
             ||||||||||||||||||||
Sbjct: 32059 ctttgccaccatcaatcatc 32078



to top

>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24
          Length = 294050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 614    gaacacactgaaggatttggctga 637
              |||||| |||||||||||||||||
Sbjct: 177692 gaacacgctgaaggatttggctga 177715



to top

>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11
          Length = 302050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tcagcaaattgatcctgaaa 366
              ||||||||||||||||||||
Sbjct: 197316 tcagcaaattgatcctgaaa 197297



to top

>gb|AY286300.1| Homo sapiens lactate dehydrogenase C (LDHC) mRNA, complete cds;
           alternatively spliced
          Length = 1216

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 208 actgaaggatttggctgatg 227



to top

>emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 in linkage group 11,
             complete sequence
          Length = 133334

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   agcagctatttccttgaaaa 238
             ||||||||||||||||||||
Sbjct: 42382 agcagctatttccttgaaaa 42401



to top

>emb|AL662836.7| Mouse DNA sequence from clone RP23-313L19 on chromosome 11, complete
             sequence
          Length = 120749

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ccaggaggaggttctctttc 195
             ||||||||||||||||||||
Sbjct: 60215 ccaggaggaggttctctttc 60196



to top

>gb|AC010011.5| Drosophila melanogaster 3L BAC RP98-17D14 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167026

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   tcaatcatctccacttccag 473
             ||||||||||||||||||||
Sbjct: 62171 tcaatcatctccacttccag 62152



to top

>ref|XM_936572.1| PREDICTED: Homo sapiens suppressor of cytokine signaling 7 (SOCS7),
            mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gagtacggtcatgtgcttct 319
            ||||||||||||||||||||
Sbjct: 1589 gagtacggtcatgtgcttct 1570



to top

>gb|AF085249.1|AF085249 Gallus gallus calcium/calmodulin-dependent kinase type II beta
           subunit mRNA, complete cds
          Length = 1703

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 tggccaggaggaggttctct 192
           ||||||||||||||||||||
Sbjct: 470 tggccaggaggaggttctct 451



to top

>dbj|AB169182.1| Macaca fascicularis testis cDNA, clone: QtsA-17816, similar to
           human lactate dehydrogenase C (LDHC), transcript variant
           2,mRNA, RefSeq: NM_017448.1
          Length = 1215

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 204 actgaaggatttggctgatg 223



to top

>gb|AC160960.5| Mus musculus BAC clone RP24-230O19 from chromosome 13, complete
            sequence
          Length = 152915

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 599  agtgtttgagagagggaaca 618
            ||||||||||||||||||||
Sbjct: 1220 agtgtttgagagagggaaca 1239



to top

>gb|AF401097.1| Homo sapiens lactate dehydrogenase C (LDHC) mRNA, complete
           sequence, alternatively spliced
          Length = 1047

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 178 actgaaggatttggctgatg 197



to top

>gb|AC124789.12| Homo sapiens chromosome 17, clone RP11-923C2, complete sequence
          Length = 105701

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  gagtacggtcatgtgcttct 319
            ||||||||||||||||||||
Sbjct: 9527 gagtacggtcatgtgcttct 9546



to top

>ref|NM_204294.1| Gallus gallus calcium/calmodulin-dependent protein kinase (CaM
           kinase) II beta (CAMK2B), mRNA
          Length = 1703

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 tggccaggaggaggttctct 192
           ||||||||||||||||||||
Sbjct: 470 tggccaggaggaggttctct 451



to top

>ref|XM_573834.1| PREDICTED: Rattus norvegicus similar to OTTHUMP00000018508
           (LOC498559), mRNA
          Length = 1111

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 acagcagctatttccttgaa 236
           ||||||||||||||||||||
Sbjct: 362 acagcagctatttccttgaa 343



to top

>gb|AY892969.1| Synthetic construct Homo sapiens clone FLH141605.01L lactate
           dehydrogenase C (LDHC) mRNA, partial cds
          Length = 999

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 120 actgaaggatttggctgatg 139



to top

>gb|AY890512.1| Synthetic construct Homo sapiens clone FLH141609.01X lactate
           dehydrogenase C (LDHC) mRNA, complete cds
          Length = 999

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 120 actgaaggatttggctgatg 139



to top

>dbj|AK058181.1| Homo sapiens cDNA FLJ25452 fis, clone TST08814, highly similar to
           L-LACTATE DEHYDROGENASE X CHAIN (EC 1.1.1.27)
          Length = 1204

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 208 actgaaggatttggctgatg 227



to top

>gb|BC090043.1| Homo sapiens lactate dehydrogenase C, transcript variant 2, mRNA
           (cDNA clone MGC:111073 IMAGE:30387780), complete cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 184 actgaaggatttggctgatg 203



to top

>gb|AE003596.5| Drosophila melanogaster chromosome 3L, section 77 of 83 of the complete
              sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    tcaatcatctccacttccag 473
              ||||||||||||||||||||
Sbjct: 124538 tcaatcatctccacttccag 124519



to top

>gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, complete sequence
          Length = 174529

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   agtgtttgagagagggaaca 618
             ||||||||||||||||||||
Sbjct: 22388 agtgtttgagagagggaaca 22369



to top

>ref|NM_014598.1| Homo sapiens suppressor of cytokine signaling 7 (SOCS7), mRNA
          Length = 2162

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gagtacggtcatgtgcttct 319
            ||||||||||||||||||||
Sbjct: 2054 gagtacggtcatgtgcttct 2035



to top

>gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, complete sequence
          Length = 188353

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   ttaggcttggttacaacagc 434
             ||||||||||||||||||||
Sbjct: 18589 ttaggcttggttacaacagc 18570



to top

>gb|AC167974.3| Mus musculus BAC clone RP23-314B11 from chromosome 1, complete sequence
          Length = 210757

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   ctttgccaccatcaatcatc 462
             ||||||||||||||||||||
Sbjct: 11846 ctttgccaccatcaatcatc 11865



to top

>emb|AL772288.12| Mouse DNA sequence from clone RP23-360H6 on chromosome 4, complete
             sequence
          Length = 132015

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ccaggaggaggttctctttc 195
             ||||||||||||||||||||
Sbjct: 39010 ccaggaggaggttctctttc 38991



to top

>gb|J02938.1|HUMLDHX Human testis-specific lactate dehydrogenase (LDHC4, LDHX) mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 186 actgaaggatttggctgatg 205



to top

>gb|U13680.1|HSU13680 Human lactate dehydrogenase-C (LDH-C) mRNA, complete cds
          Length = 1254

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 actgaaggatttggctgatg 639
           ||||||||||||||||||||
Sbjct: 261 actgaaggatttggctgatg 280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,940,536
Number of Sequences: 3902068
Number of extensions: 5940536
Number of successful extensions: 112250
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111933
Number of HSP's gapped (non-prelim): 311
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top