ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9n08 |
|---|---|
| Clone Library Name | barley_pub |
>YPEB_SYNP2 (P42784) Hypothetical protein in petB 5'region (Fragment)| Length = 411 Score = 96.3 bits (238), Expect = 6e-20 Identities = 50/97 (51%), Positives = 67/97 (69%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VN+ +ASASEILAGAL DNGRA+LVG KTFGKG IQS+ EL DG+ + +TVAKY +P H Sbjct: 304 VNQATASASEILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHH 363 Query: 309 EIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLEM 199 +I+ +GI PD + + S T+ A+L++ Sbjct: 364 DINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDL 400
>CTPA_SYNY3 (Q55669) Carboxyl-terminal-processing protease precursor (EC| 3.4.21.102) Length = 427 Score = 91.3 bits (225), Expect = 2e-18 Identities = 49/97 (50%), Positives = 63/97 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VN+ +ASASEILAGAL DN RA LVG KTFGKG IQS+ EL DG+ + +TVAKY +P H Sbjct: 307 VNQGTASASEILAGALQDNQRATLVGEKTFGKGLIQSLFELSDGAGIAVTVAKYETPQHH 366 Query: 309 EIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLEM 199 +I +GI PD +S S + A+L++ Sbjct: 367 DIHKLGIMPDEVVEQPLISFAEITSPADVQYQAALDL 403
>CTPAL_STAHJ (Q4L6D0) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 70.9 bits (172), Expect = 3e-12 Identities = 37/70 (52%), Positives = 46/70 (65%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GA+ D+ +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGAMRDHKKAKVYGSKTFGKGIVQTTREFKDGSLLKYTQMKWLTPDGH 382 Query: 309 EIDHIGIQPD 280 I GIQPD Sbjct: 383 NIHGKGIQPD 392
>CTPAL_STAEQ (Q5HPB7) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 491 Score = 70.5 bits (171), Expect = 4e-12 Identities = 39/86 (45%), Positives = 54/86 (62%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GA+ D +A + G KTFGKG +Q++ E DGS + T K+L+P H Sbjct: 318 VNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTIREFSDGSLIKYTEMKWLTPDGH 377 Query: 309 EIDHIGIQPDIQCTADALSLPRAPSL 232 I GI+PD+ ++S P+ SL Sbjct: 378 YIHGKGIRPDV-----SISTPKYQSL 398
>CTPAL_STAAW (Q8NWR2) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPAL_STAAS (Q6G9E1) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPAL_STAAR (Q6GGY8) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPAL_STAAN (Q7A5M9) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPAL_STAAM (Q99U67) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPAL_STAAC (Q5HG01) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPAL_STAAB (Q2YXZ9) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H Sbjct: 323 VNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGH 382 Query: 309 EIDHIGIQPDI 277 I GI+PD+ Sbjct: 383 YIHGKGIKPDV 393
>CTPA_BARBA (Q44879) Carboxy-terminal-processing protease precursor (EC| 3.4.21.102) (C-terminal-processing protease) Length = 434 Score = 69.7 bits (169), Expect = 6e-12 Identities = 35/71 (49%), Positives = 49/71 (69%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 +N SASASEI+AGAL D+ RA ++G ++FGKG +Q++ L + AL +T A Y +P+ Sbjct: 288 INGGSASASEIVAGALQDHRRATIIGTQSFGKGSVQTIIPLGENGALRLTTALYYTPSGT 347 Query: 309 EIDHIGIQPDI 277 I IGI PDI Sbjct: 348 SIQGIGITPDI 358
>CTPAL_STAES (Q8CSK8) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 491 Score = 69.3 bits (168), Expect = 8e-12 Identities = 39/86 (45%), Positives = 53/86 (61%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VNE SASASE+ GA+ D +A + G KTFGKG +Q+ E DGS + T K+L+P H Sbjct: 318 VNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTTREFSDGSLIKYTEMKWLTPDGH 377 Query: 309 EIDHIGIQPDIQCTADALSLPRAPSL 232 I GI+PD+ ++S P+ SL Sbjct: 378 YIHGKGIRPDV-----SISTPKYQSL 398
>CTPAL_STAS1 (Q49XN1) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 491 Score = 67.8 bits (164), Expect = 2e-11 Identities = 35/70 (50%), Positives = 45/70 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 VN+ SASASE+ GA+ D +A + G KTFGKG +Q+ E +DGS L T K+L+P H Sbjct: 318 VNKGSASASEVFTGAMKDYNKAKVYGSKTFGKGIVQTTREFEDGSLLKFTNMKWLTPKSH 377 Query: 309 EIDHIGIQPD 280 I GI PD Sbjct: 378 YIHGKGITPD 387
>PRC_SALTY (P43669) Tail-specific protease precursor (EC 3.4.21.102) (Protease| Re) (PRC protein) (C-terminal-processing peptidase) Length = 682 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/42 (54%), Positives = 29/42 (69%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELD 364 V+ SASASEI A A+ D GRA++VG TFGKG +Q L+ Sbjct: 446 VDRFSASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLN 487
>PRC_ECOLI (P23865) Tail-specific protease precursor (EC 3.4.21.102) (Protease| Re) (PRC protein) (C-terminal-processing peptidase) Length = 682 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/42 (54%), Positives = 29/42 (69%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELD 364 V+ SASASEI A A+ D GRA++VG TFGKG +Q L+ Sbjct: 446 VDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLN 487
>PRC_HAEIN (P45306) Tail-specific protease precursor (EC 3.4.21.102) (Protease| Re) (C-terminal-processing peptidase) Length = 695 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/42 (50%), Positives = 27/42 (64%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELD 364 +N SASASEI A A+ D R I++G TFGKG +Q L+ Sbjct: 453 INRYSASASEIFAAAMQDYRRGIIIGQNTFGKGTVQQSRSLN 494
>Y858_CHLTR (O84866) Protein CT_858| Length = 601 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALH 310 +NE+ S ++ L DN RA++VG +T G G + + + + T + S A+ Sbjct: 485 INEQDFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGI-KTCSLTGSLAVR 543 Query: 309 E----IDHIGIQPDI 277 E I++IG++P I Sbjct: 544 EHGAFIENIGVEPHI 558
>Y1016_CHLPN (Q9Z6P3) Protein CPn_1016/CP0837/CPj1016/CpB1054| Length = 619 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 495 M*VNEESASASEILAGALHDNGRAILVGHKTFGKG 391 M ++E+ S ++ L DNGRA L+G T G G Sbjct: 484 MLIDEDDFSCGDLAPAILKDNGRATLIGKPTAGAG 518
>HTXB_PSEST (O69061) Probable phosphite transport system binding protein htxB| precursor Length = 298 Score = 30.0 bits (66), Expect = 5.5 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 3/99 (3%) Frame = +2 Query: 128 TIYEAEPFDC*ISNACSATIMHESISRLAASLLSVSEGALGKDSASAVHCMSGWIPIWSI 307 TI E EP +++ AT S AA ++++ G H GW+ W Sbjct: 57 TIKEFEPIFKYLADQLGATYEIVSPESWAAISVAMTNG----------HVDVGWLGPWGY 106 Query: 308 SCS---AGERYFATVMNRAEPSSSSVTLCILPLPKVLWP 415 S AG ATV R EP ++ + LP WP Sbjct: 107 VLSNKKAGTEVLATVKYRGEPFYKALIVGRADLPIKKWP 145
>YYAH_BACSU (P37516) Hypothetical protein yyaH (ORFF)| Length = 126 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 456 LAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITV 337 L L +G A++ G +T G G +SV E D+G+ + IT+ Sbjct: 87 LTDRLKADGFAVVNGPRTTGDGYYESVIEDDEGNLIEITI 126
>YHID_ECOLI (P0AFV2) Hypothetical protein yhiD| Length = 215 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 360 GSALFITVAKYLSPALHEIDHIGIQP 283 GSALF+ V+KY + +DH+G+ P Sbjct: 41 GSALFMIVSKYGFADVLSLDHVGLDP 66
>YHID_ECO57 (P0AFV3) Hypothetical protein yhiD| Length = 215 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 360 GSALFITVAKYLSPALHEIDHIGIQP 283 GSALF+ V+KY + +DH+G+ P Sbjct: 41 GSALFMIVSKYGFADVLSLDHVGLDP 66
>Y866_HAEIN (P44063) Hypothetical protein HI0866| Length = 207 Score = 29.3 bits (64), Expect = 9.4 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = -3 Query: 489 VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPAL 313 + EE E L AL +A G K F +G S ++L DG+ LFI KYL L Sbjct: 63 LTEEKKVQVENLTNALDIAKKA---GIKDFSRGNNISDSKLADGTYLFILAEKYLQAQL 118
>GPH_RHOCA (O33512) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 219 Score = 29.3 bits (64), Expect = 9.4 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Frame = -3 Query: 360 GSALFITVAKYLSPALHEIDHIGIQPDIQCTADALSLP-RAPSLTESNEAAS-LEMDSCI 187 G + IT K PAL I H+G+ Q SLP R P+ NEA L + Sbjct: 104 GCPMAITTNKPYKPALAAIAHVGLTDYFQLVIGGDSLPTRKPNPEMVNEARRVLRRPHAL 163 Query: 186 MVAEQALEIQQSKGSAS*MVHY 121 + + ++ Q ++ + V Y Sbjct: 164 YIGDSEIDAQTAQNAGLPFVIY 185
>RIMK_DESPS (Q6AKK4) Ribosomal protein S6 modification protein| Length = 464 Score = 29.3 bits (64), Expect = 9.4 Identities = 25/100 (25%), Positives = 42/100 (42%) Frame = -3 Query: 501 ANM*VNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLS 322 AN+ V + A+ + L NG+ + +T G + S T D S++ + S Sbjct: 336 ANLLVQQFIKEANGKILRCLVINGKVVASIERTAASGELSSNTHQDGKSSIVKITPEERS 395 Query: 321 PALHEIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLE 202 AL +G+Q + D ++ P L E N + LE Sbjct: 396 LALKAAKVLGLQ---IASVDIINSKAGPLLLEVNSSPELE 432
>DP2S_THEAC (Q9HLK5) DNA polymerase II small subunit (EC 2.7.7.7) (Pol II)| Length = 488 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 423 ILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPALHEIDHIGIQPD 280 I VG KTF K +++ GS + KYL + +D IG+ PD Sbjct: 239 IHVGSKTFRKNEFEAMVRWISGSDPDASRVKYLILSGDVVDGIGVYPD 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,308,757 Number of Sequences: 219361 Number of extensions: 1692874 Number of successful extensions: 4750 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4748 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
