ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ219480.1| Wheat putative protease mRNA, particial cds 289 5e-75
2dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon 46 0.13
7emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 ... 42 2.1
8dbj|AP000659.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.1
9dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.1
10gb|AE016830.1| Enterococcus faecalis V583, complete genome 42 2.1
11ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-t... 40 8.3
12gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
13ref|XM_711510.1| Candida albicans SC5314 putative cell wall beta... 40 8.3
14emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22... 40 8.3
15gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome... 40 8.3
16gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosom... 40 8.3
17ref|XM_719435.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.3
18emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chr... 40 8.3
19emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H... 40 8.3
20gb|AC098641.3| Genomic sequence for Mus musculus, clone RP23-258... 40 8.3
21emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.3
22emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 8.3
23gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, comple... 40 8.3
24emb|BX470081.7| Zebrafish DNA sequence from clone RP71-84P16, co... 40 8.3
25gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete s... 40 8.3
26gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, com... 40 8.3
27emb|BX682556.5| Zebrafish DNA sequence from clone DKEY-105I19 in... 40 8.3
28gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp12... 40 8.3
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
30gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ... 40 8.3
31gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ... 40 8.3
32gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ... 40 8.3
33gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ... 40 8.3
34emb|CT572989.7| Mouse DNA sequence from clone RP24-176J14 on chr... 40 8.3
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
36emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in... 40 8.3
37emb|AL929412.5| Mouse DNA sequence from clone RP23-59M8 on chrom... 40 8.3
38dbj|D88491.1| Candida albicans mRNA for CaSKN1, complete cds 40 8.3
39dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:... 40 8.3 
>gb|DQ219480.1| Wheat putative protease mRNA, particial cds
          Length = 453

 Score =  289 bits (146), Expect = 5e-75
 Identities = 272/314 (86%)
 Strand = Plus / Minus

                                                                       
Query: 176 tccgccaccataatgcacgagtccatctccagactcgcggcctcgttgctctcggtgagc 235
           ||||||||||||||||||||||||||||  | ||||||||||| |||| |  ||||||| 
Sbjct: 355 tccgccaccataatgcacgagtccatctttaaactcgcggcctggttgtttccggtgagg 296

                                                                       
Query: 236 gaaggcgctctcggtaaggatagcgcgtcagcggtgcactgtatgtcgggttggatcccg 295
           |||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 295 gaaggcgccctgggtaaggatagcgggtcagcggtgcattgtatgtcgggttggatcccg 236

                                                                       
Query: 296 atatggtcgatttcgtgcagcgccggagagagatactttgcaaccgtgatgaatagagca 355
           | ||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||
Sbjct: 235 acatggtcgatttcgtgcagcgcgggagagagatactttgcaggtgtgatgaatagagca 176

                                                                       
Query: 356 gagccatcatccagctctgtgacactctgtattcttcctttgccaaaggttttgtggcct 415
           |||  ||  | ||| | ||| |||||||||||||||| ||| |  |||||||||||||||
Sbjct: 175 gaggtattgtacagttttgtcacactctgtattcttcttttacagaaggttttgtggcct 116

                                                                       
Query: 416 accagaatagcacggccattgtcatgcagtgccccagccaaaatttcgcttgcactggca 475
           | |||||||| |||| |||||||||||| ||   |||||||||||| | ||| | |||||
Sbjct: 115 aacagaatagtacgggcattgtcatgcaatggtgcagccaaaatttggtttgaattggca 56

                         
Query: 476 ctttcttcgttgac 489
           |||| || ||||||
Sbjct: 55  ctttttttgttgac 42
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>dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008K20, full
            insert sequence
          Length = 1951

 Score =  184 bits (93), Expect = 2e-43
 Identities = 291/357 (81%)
 Strand = Plus / Minus

                                                                        
Query: 133  ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 192
            |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 1562 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 1503

                                                                        
Query: 193  cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 252
             || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 1502 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 1443

                                                                        
Query: 253  ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 312
             |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 1442 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 1383

                                                                        
Query: 313  cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 372
            ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 1382 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 1323

                                                                        
Query: 373  tgtgacactctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggcc 432
             || |||||||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| ||
Sbjct: 1322 agtcacactctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgacc 1263

                                                                     
Query: 433  attgtcatgcagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 489
            ||||||||| | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 1262 attgtcatgtaatgctcctgccaagatttcacttgcacttgcacttccttcattgac 1206
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                            
Query: 133      ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 192
                |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 12192541 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 12192482

                                                                            
Query: 193      cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 252
                 || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 12192481 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 12192422

                                                                            
Query: 253      ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 312
                 |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 12192421 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 12192362

                                                                            
Query: 313      cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 372
                ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 12192361 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 12192302

                             
Query: 373      tgtgacactctgt 385
                 || |||||||||
Sbjct: 12192301 agtcacactctgt 12192289



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                            
Query: 382      ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 441
                ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 12192173 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 12192114

                                                                        
Query: 442      cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgacctacatgt 497
                 | ||| || ||||| ||||| |||||||| |||||| |||| |||||||| ||||
Sbjct: 12192113 taatgctcctgccaagatttcacttgcacttgcacttccttcattgacctatatgt 12192058
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>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592B08
          Length = 131096

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                         
Query: 133   ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 192
             |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 29563 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 29504

                                                                         
Query: 193   cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 252
              || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 29503 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 29444

                                                                         
Query: 253   ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 312
              |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 29443 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 29384

                                                                         
Query: 313   cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 372
             ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 29383 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 29324

                          
Query: 373   tgtgacactctgt 385
              || |||||||||
Sbjct: 29323 agtcacactctgt 29311



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                         
Query: 382   ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 441
             ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 29195 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 29136

                                                                     
Query: 442   cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgacctacatgt 497
              | ||| || ||||| ||||| |||||||| |||||| |||| |||||||| ||||
Sbjct: 29135 taatgctcctgccaagatttcacttgcacttgcacttccttcattgacctatatgt 29080
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>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0468A12
          Length = 143018

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                          
Query: 133    ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 192
              |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 135330 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 135271

                                                                          
Query: 193    cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 252
               || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 135270 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 135211

                                                                          
Query: 253    ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 312
               |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 135210 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 135151

                                                                          
Query: 313    cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 372
              ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 135150 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 135091

                           
Query: 373    tgtgacactctgt 385
               || |||||||||
Sbjct: 135090 agtcacactctgt 135078



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                          
Query: 382    ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 441
              ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 134962 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 134903

                                                                      
Query: 442    cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgacctacatgt 497
               | ||| || ||||| ||||| |||||||| |||||| |||| |||||||| ||||
Sbjct: 134902 taatgctcctgccaagatttcacttgcacttgcacttccttcattgacctatatgt 134847
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>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon
          Length = 2858

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 428 cggccattgtcatgcagtgccccagccaaaatttc 462
           ||||||||||| || ||||||||||| ||||||||
Sbjct: 263 cggccattgtcttggagtgccccagctaaaatttc 297
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>emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 in linkage group 13,
             complete sequence
          Length = 84641

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 577   caaaaaacattcatgtgatgc 597
             |||||||||||||||||||||
Sbjct: 71470 caaaaaacattcatgtgatgc 71490
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>dbj|AP000659.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-1B14, complete
             sequences
          Length = 96281

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 578   aaaaaacattcatgtgatgct 598
             |||||||||||||||||||||
Sbjct: 14633 aaaaaacattcatgtgatgct 14653
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>dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-778O17, complete
              sequence
          Length = 157282

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 578    aaaaaacattcatgtgatgct 598
              |||||||||||||||||||||
Sbjct: 134416 aaaaaacattcatgtgatgct 134436
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 437     tcatgcagtgccccagccaaaatttcgcttgcactggcact 477
               |||||||||||  |||| |||||||||  ||||||||||||
Sbjct: 1631410 tcatgcagtgctgcagcaaaaatttcggatgcactggcact 1631450
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>ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-type peptidase
            AT3G57680 mRNA, complete cds
          Length = 1551

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 452  gccaaaatttcgcttgcactggcactttcttc 483
            ||||||||||| |||||||| |||||| ||||
Sbjct: 1229 gccaaaatttcacttgcactagcacttccttc 1198
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>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0056I10, complete sequence
          Length = 158833

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   tggtcgatttcgtgcagcgc 318
             ||||||||||||||||||||
Sbjct: 64351 tggtcgatttcgtgcagcgc 64332
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>ref|XM_711510.1| Candida albicans SC5314 putative cell wall beta-glucan synthase
            (CaO19_7362), mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 585  attcatgtgatgctggtatt 604
            ||||||||||||||||||||
Sbjct: 1022 attcatgtgatgctggtatt 1041
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>emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22, complete sequence
          Length = 112797

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   cactctgtattcttcctttg 397
             ||||||||||||||||||||
Sbjct: 26387 cactctgtattcttcctttg 26368
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>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence
          Length = 193572

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    tccagctctgtgacactctg 384
              ||||||||||||||||||||
Sbjct: 179913 tccagctctgtgacactctg 179894
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>gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosome 7, complete sequence
          Length = 205352

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   tccagctctgtgacactctg 384
             ||||||||||||||||||||
Sbjct: 12430 tccagctctgtgacactctg 12411
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>ref|XM_719435.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04262)
            partial mRNA
          Length = 6072

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  tcacttcttttataaatgaa 569
            ||||||||||||||||||||
Sbjct: 3020 tcacttcttttataaatgaa 3039
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>emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chromosome 1q25.1-31.1
             Contains the 3' end of the DHX9 gene for DEAH
             (Asp-Glu-Ala-His) box polypeptide 9 and the 3' end of a
             gene for a novel protein, complete sequence
          Length = 42262

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tatttatttacagaggtagt 87
             ||||||||||||||||||||
Sbjct: 26217 tatttatttacagaggtagt 26198
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>emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H3 on chromosome 20 Contains the
             3' end of the ATRN gene for attractin (with
             dipeptidylpeptidase IV activity) (KIAA0548), ESTs, STSs
             and GSSs, complete sequence
          Length = 104907

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 388   tcttcctttgccaaaggttttgtg 411
             |||||||||||||| |||||||||
Sbjct: 75005 tcttcctttgccaatggttttgtg 75028
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>gb|AC098641.3| Genomic sequence for Mus musculus, clone RP23-258H17, from chromosome
             17, complete sequence
          Length = 78373

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 562   taaatgaacatcagccaaaaaaca 585
             ||||||||||||| ||||||||||
Sbjct: 56384 taaatgaacatcatccaaaaaaca 56361
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>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8
          Length = 94378

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 452   gccaaaatttcgcttgcactggcactttcttc 483
             ||||||||||| |||||||| |||||| ||||
Sbjct: 26832 gccaaaatttcacttgcactagcacttccttc 26863
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   ttttgtggcctaccagaata 424
             ||||||||||||||||||||
Sbjct: 73783 ttttgtggcctaccagaata 73764
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>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence
          Length = 169106

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    atatttatttacagaggtag 86
             ||||||||||||||||||||
Sbjct: 77128 atatttatttacagaggtag 77109
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>emb|BX470081.7| Zebrafish DNA sequence from clone RP71-84P16, complete sequence
          Length = 84546

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 577   caaaaaacattcatgtgatg 596
             ||||||||||||||||||||
Sbjct: 77132 caaaaaacattcatgtgatg 77151
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>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence
          Length = 38838

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   cgatttcgtgcagcgccgga 322
             ||||||||||||||||||||
Sbjct: 14591 cgatttcgtgcagcgccgga 14572
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>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence
          Length = 210849

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tatttatttacagaggtagt 87
              ||||||||||||||||||||
Sbjct: 104286 tatttatttacagaggtagt 104305
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>emb|BX682556.5| Zebrafish DNA sequence from clone DKEY-105I19 in linkage group 3,
              complete sequence
          Length = 244555

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 577    caaaaaacattcatgtgatg 596
              ||||||||||||||||||||
Sbjct: 220576 caaaaaacattcatgtgatg 220595
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>gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp120 C2-C4 region (env) gene,
           partial cds
          Length = 649

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  cacactacaatgcagaatacaaca 44
           ||||||||||||||||||| ||||
Sbjct: 406 cacactacaatgcagaataaaaca 429
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 299      tggtcgatttcgtgcagcgc 318
                ||||||||||||||||||||
Sbjct: 18328986 tggtcgatttcgtgcagcgc 18328967
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>gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ASLV retrovirus gag
           pseudogene, partial sequence
          Length = 826

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 448 cccagccaaaatttcgcttg 467
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
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>gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 825

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 448 cccagccaaaatttcgcttg 467
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
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>gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 777

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 448 cccagccaaaatttcgcttg 467
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
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>gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 448 cccagccaaaatttcgcttg 467
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
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>emb|CT572989.7| Mouse DNA sequence from clone RP24-176J14 on chromosome 9, complete
             sequence
          Length = 168760

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   aatgaacatcagccaaaaaa 583
             ||||||||||||||||||||
Sbjct: 55809 aatgaacatcagccaaaaaa 55790
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 299      tggtcgatttcgtgcagcgc 318
                ||||||||||||||||||||
Sbjct: 18488387 tggtcgatttcgtgcagcgc 18488368
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>emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in linkage group 21,
             complete sequence
          Length = 136791

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   ttttgtggcctaccagaata 424
             ||||||||||||||||||||
Sbjct: 48247 ttttgtggcctaccagaata 48266
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>emb|AL929412.5| Mouse DNA sequence from clone RP23-59M8 on chromosome 2, complete
            sequence
          Length = 57210

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 582  aacattcatgtgatgctggt 601
            ||||||||||||||||||||
Sbjct: 3749 aacattcatgtgatgctggt 3730
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>dbj|D88491.1| Candida albicans mRNA for CaSKN1, complete cds
          Length = 2390

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 585  attcatgtgatgctggtatt 604
            ||||||||||||||||||||
Sbjct: 1496 attcatgtgatgctggtatt 1515
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>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence
          Length = 206647

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 388   tcttcctttgccaaaggttttgtg 411
             |||||||||||||| |||||||||
Sbjct: 99680 tcttcctttgccaatggttttgtg 99703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,825,823
Number of Sequences: 3902068
Number of extensions: 4825823
Number of successful extensions: 88890
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88729
Number of HSP's gapped (non-prelim): 160
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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