ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15h01 |
|---|---|
| Clone Library Name | barley_pub |
>YCF23_CYAPA (P31605) Hypothetical 26.6 kDa protein ycf23| Length = 243 Score = 101 bits (251), Expect = 2e-21 Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 1/114 (0%) Frame = +1 Query: 217 RENRALKIISGLQNFDRSNVASVVTAADKGGATHVDIACDQDLV-KLALELTNLPICVSS 393 ++ + +K+ISGL NF+ ++V + AA K A+ +DIA LV K+ E+ NLPICVS+ Sbjct: 10 KQKKLIKVISGLNNFNTTHVIKIAKAASKTNASFIDIAAAPKLVEKVKKEVPNLPICVSA 69 Query: 394 VDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITLS 555 + P F V+AGA++IEIGN+DS Y+ G + + +L+L ++TR +LP LS Sbjct: 70 IKPELFVPCVKAGAELIEIGNFDSLYNQGYKINFSDVLSLVKQTRSLLPDTPLS 123
>YCF23_ANTSP (P46314) Hypothetical 30.3 kDa protein ycf23 (ORF 277)| Length = 277 Score = 95.9 bits (237), Expect = 7e-20 Identities = 40/109 (36%), Positives = 73/109 (66%) Frame = +1 Query: 214 FRENRALKIISGLQNFDRSNVASVVTAADKGGATHVDIACDQDLVKLALELTNLPICVSS 393 F + +A+K+ISG+ NF+ + ++ A + AT+VD+A + +V ++++P+CVSS Sbjct: 12 FIQRKAIKVISGINNFNVGQIFKIIHACEISKATYVDVARNPKIVSFIKSISSIPVCVSS 71 Query: 394 VDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILP 540 +DP A +V AGA ++EIGN+D FY G+ S++QI+ + ++ + +LP Sbjct: 72 IDPRALYESVLAGADLVEIGNFDCFYTNGVYLSNDQIIAIVKQVKYLLP 120
>YCF23_PORPU (P51373) Hypothetical 29.1 kDa protein ycf23 (ORF265)| Length = 265 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/113 (38%), Positives = 68/113 (60%) Frame = +1 Query: 214 FRENRALKIISGLQNFDRSNVASVVTAADKGGATHVDIACDQDLVKLALELTNLPICVSS 393 F + ALK+I+GL NF+ + + A++ T++DI D D++K ++ +PICVS+ Sbjct: 11 FDKQSALKVITGLNNFNIPQIKQMALASEIAKVTYLDIVADTDIIKEVESVSKIPICVSA 70 Query: 394 VDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITL 552 V + G ++EIGNYD FY+ G F SE+I +++ETR +LP TL Sbjct: 71 VKSKELLKCQKTGVNILEIGNYDCFYEQGRLFHSEEIKLISKETRNLLPHATL 123
>YCF23_CYACA (O19904) Hypothetical 27.4 kDa protein ycf23| Length = 249 Score = 88.6 bits (218), Expect = 1e-17 Identities = 44/121 (36%), Positives = 70/121 (57%) Frame = +1 Query: 193 KDAVLRPFRENRALKIISGLQNFDRSNVASVVTAADKGGATHVDIACDQDLVKLALELTN 372 K VL +A+K+ISGL N + +V ++ A+ + +++DIA D LVK+ N Sbjct: 4 KSQVLLDIANKKAIKVISGLTNLNYEHVLTIARASQRACVSYIDIAADPQLVKVVKANVN 63 Query: 373 LPICVSSVDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITL 552 +PICVS ++ +AV AGA +IE+GNY+S Y S +I+ L E +K+ P + L Sbjct: 64 IPICVSGLEIQPIYNAVLAGADLIEVGNYESLYKRNTVLSVCKIITLVEEIKKLCPRVPL 123 Query: 553 S 555 + Sbjct: 124 T 124
>DEOC_MYCLE (Q9CB45) Deoxyribose-phosphate aldolase (EC 4.1.2.4)| (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) Length = 226 Score = 33.1 bits (74), Expect = 0.54 Identities = 23/56 (41%), Positives = 29/56 (51%) Frame = +1 Query: 301 KGGATHVDIACDQDLVKLALELTNLPICVSSVDPSAFQSAVEAGAQMIEIGNYDSF 468 K ATH D+A LV A+EL +CVS PS +AVEAGA + + F Sbjct: 20 KSEATHADVAA---LVAEAVELGVYAVCVS---PSMVPAAVEAGAGGLRVATVVGF 69
>ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing protein 3| Length = 950 Score = 32.3 bits (72), Expect = 0.93 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 172 RHGRRTRPVPLPGSWPPAGTWPRRRTAPGEVLGSP 68 RHGRRT P+PG P+ PR + + G VL P Sbjct: 797 RHGRRTAAPPIPG---PSDGAPRSKASAGHVLRKP 828
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein| Zimp10) Length = 1072 Score = 32.0 bits (71), Expect = 1.2 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 16/105 (15%) Frame = +3 Query: 6 PRAAPYLFHPQQTFSSK-------NGSAGLPSTSPGAVLRRGQVPAGGHEPGSGTGRVRR 164 P + + P Q ++S+ G A + + A + G P+G P G + R Sbjct: 319 PVCSSFQMGPTQAYNSQFMNQPGPRGPASMGGSLNPAGMAAGMTPSGMSGPPMGMNQPRP 378 Query: 165 PCLGGFCRH---------QGRRPQALP*EPCSQDHFGAPEFRQVQ 272 P + F H G RPQ+LP + + + G P + Q Sbjct: 379 PGISPFGTHGQRMPQQTYPGPRPQSLPIQSIKRPYPGEPNYGNQQ 423
>YQ5B_CAEEL (Q09254) Hypothetical protein C16C10.11| Length = 154 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +3 Query: 3 RPRAAPYLFHPQQTFSSKNGSAGLPSTSPGAVLRRGQVPAGGHEPGSGTGR-VRRPCLGG 179 RP AA +HP + G PS PG ++++ AGG GS G V GG Sbjct: 33 RPAAAAPAYHPPAAPTPMGAPMGAPSQGPG-LMKQMAATAGGVAIGSAVGHAVGGMFTGG 91 Query: 180 FCRHQGRRPQA 212 H + P A Sbjct: 92 GSSHAEQAPAA 102
>NUOCD_SALTY (P0A1Y6) NADH-quinone oxidoreductase chain C/D (EC 1.6.99.5) (NADH| dehydrogenase I, chain C/D) (NDH-1, chain C/D) Length = 600 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Frame = -2 Query: 267 PVEILEPRNDLESTVLTEGPEDGVLGGGRSRRGTDGEH------GPCRSPAHGHRPALGR 106 P E+ + + DLE LT PED + +RGTD E GP AHG + + Sbjct: 182 PFELTKAKQDLEMEALTFKPEDWGM-----KRGTDNEDFMFLNLGPNHPSAHGAFRIILQ 236 Query: 105 GEGRRLEKC 79 +G + C Sbjct: 237 LDGEEIVDC 245
>NUOCD_SALTI (P0A1Y7) NADH-quinone oxidoreductase chain C/D (EC 1.6.99.5) (NADH| dehydrogenase I, chain C/D) (NDH-1, chain C/D) Length = 600 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Frame = -2 Query: 267 PVEILEPRNDLESTVLTEGPEDGVLGGGRSRRGTDGEH------GPCRSPAHGHRPALGR 106 P E+ + + DLE LT PED + +RGTD E GP AHG + + Sbjct: 182 PFELTKAKQDLEMEALTFKPEDWGM-----KRGTDNEDFMFLNLGPNHPSAHGAFRIILQ 236 Query: 105 GEGRRLEKC 79 +G + C Sbjct: 237 LDGEEIVDC 245
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein| Zimp10) Length = 1067 Score = 31.2 bits (69), Expect = 2.1 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Frame = +3 Query: 33 PQQTFSSK-------NGSAGLPSTSPGAVLRRGQVPAGGHEPGSGTGRVRRPCLGGFCRH 191 P Q ++S+ G A + + A + G P+G P G + R P + F H Sbjct: 322 PTQAYNSQFMNQPGPRGPASMGGSMNPASMAAGMTPSGMSGPPMGMNQPRPPGISPFGTH 381 Query: 192 ---------QGRRPQALP*EPCSQDHFGAPEFRQVQ 272 G RPQ+LP + + + G P + Q Sbjct: 382 GQRMPQQTYPGPRPQSLPIQNIKRPYPGEPNYGNQQ 417
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 30.8 bits (68), Expect = 2.7 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Frame = -2 Query: 381 DRKVSQLQRELYQVLVTCYINMGSAS---LICGRDDRCNIGPVEILEPRNDLESTVLTEG 211 D QL E L +N+G ++ DD C++ PV I EP S E Sbjct: 1199 DISSKQLSPESLGTLQFGELNLGKEERGPVMKAEDDSCHLAPVSIPEPHRATVSPSTDET 1258 Query: 210 PEDGVLGG--GRSRRGTDGEHGP 148 P + GG S D +H P Sbjct: 1259 PAGTLPGGSFSHSALSVDRKHSP 1281
>PDCD7_HUMAN (Q8N8D1) Programmed cell death protein 7 (ES18) (HES18)| Length = 485 Score = 30.8 bits (68), Expect = 2.7 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = -1 Query: 166 GRRTRPVPLPGSWPP-AGTWPRRRTAPGEVLGSPAL 62 G R RP P PG PP + WP P +VLG AL Sbjct: 104 GERPRPPP-PGPGPPWSPRWPEAPPPPADVLGDAAL 138
>EBA1_FLAME (P36911) Endo-beta-N-acetylglucosaminidase F1 precursor (EC| 3.2.1.96) (Mannosyl-glycoprotein endo-beta-N-acetyl-glucosaminidase F1) (Di-N-acetylchitobiosyl beta-N-acetylglucosaminidase F1) (Endoglycosidase F1) Length = 339 Score = 30.4 bits (67), Expect = 3.5 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 205 LRPFRENRALKIISGLQNFDRSNVASVVTAADKGGATHVDIACD 336 L+P ++ I+S L N DRS +A++ TA K A + CD Sbjct: 127 LKPLQDKGIKVILSILGNHDRSGIANLSTARAKAFAQELKNTCD 170
>POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3015 Score = 30.4 bits (67), Expect = 3.5 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = -2 Query: 279 CNIGPVEI----LEPRNDLESTVLTEGPEDGVLGGGRSRRGTDGEHGPCRSPAHGHRPA 115 CN+ ++ L+P +E+T + P+D V R R G+HG R + G RP+ Sbjct: 1455 CNVSVTQVVDFSLDPTFTIETTTM---PQDAVSRSQRRGRTGRGKHGVYRYVSQGERPS 1510
>GLUQ_BIFLO (Q8G4X3) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 379 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = -2 Query: 285 DRCNIGPVEILEPRNDLESTVLTEGPEDGVLGGGRSRRGTDGEHGPCRSPAHGHRPALGR 106 D ++G +I+ R+ L ST L +L GG + E P + H P + Sbjct: 236 DDLDMGVDDIVRGRDLLRSTALQMWIRQCLLAGGFEPECGNTEKPLAEHPEYAHLPLIDN 295 Query: 105 GEGRRLEK 82 GRRL K Sbjct: 296 AAGRRLAK 303
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 30.4 bits (67), Expect = 3.5 Identities = 35/114 (30%), Positives = 45/114 (39%), Gaps = 2/114 (1%) Frame = -1 Query: 421 PQIGMLKDRQMTHRSEG*SAPARALPSPGHMLYQHG*RLPYLRP*RQMQHWTCRNSGAPK 242 PQ + + + S G P A+P PG L +P P R P+ Sbjct: 73 PQPSPQQQTKASAPSAGGETPRPAVPKPGPGLKPGPRPVPKPGP---------RPGPRPE 123 Query: 241 *S*EHGSHGRA*GRRPWWRQKP--PRHGRRTRPVPLPGSWPPAGTWPRRRTAPG 86 G G+A G++P Q P P G+ RPVP PG P G P TA G Sbjct: 124 -----GGAGKA-GQQPSGAQGPARPESGKTPRPVPKPG--PRPGNNPFSSTASG 169
>LRP1_HHV1F (P17588) Latency-related protein 1| Length = 340 Score = 30.4 bits (67), Expect = 3.5 Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 219 TEGP-EDGVLGGGRSRRGTDGEHGPCRSPAHGHRPALGRGEGRR 91 T+GP G GGGR G G GP S G R GRG GRR Sbjct: 283 TDGPARGGGSGGGRGPGG--GRGGPRGSRGRGGRGRGGRGGGRR 324
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 30.0 bits (66), Expect = 4.6 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Frame = -1 Query: 178 PPRHGRRTRPVPLP--GSWPPAGTWPRRRTAPGEVLGSPALP 59 PP G RP P P G WPP P PG G P +P Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPP-----PGRTPGPPGMP 314
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 54 KNGSAGLPSTSPGAVLRRGQVPAGGHEPGSGTGRVRRPC 170 K+GSAG PS + + R + G P +GR RR C Sbjct: 28 KSGSAGAPSKNSSRLGGRPCMCTAGRRPNRASGRRRRSC 66
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/42 (38%), Positives = 18/42 (42%) Frame = -2 Query: 216 EGPEDGVLGGGRSRRGTDGEHGPCRSPAHGHRPALGRGEGRR 91 EGP G+ GG R G G G P G +G G G R Sbjct: 774 EGPGGGMGGGHRPHEGPGGGMGGGHRPHEGPGGGMGGGSGHR 815
>SYD_LISMF (Q71ZF1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 591 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 334 DQDLVKLALELTNLPICVSSVDPSAFQSAVEAGAQM 441 D+ ++ LEL N+ V VD FQSA+E G ++ Sbjct: 288 DKPDIRFGLELVNVSDVVKDVDFKVFQSAIENGGEV 323
>LPXK_DESPS (Q6ALV8) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 348 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +1 Query: 235 KIISGLQNFDRSNVASVVTAADKGGATHVDIACDQDLVKLALELTNLPI 381 K S Q + + +V A KGGA + I D+DLVK+ T LP+ Sbjct: 275 KAFSDHQQYTGQCIEEIVKEAKKGGAQAI-ITTDKDLVKIDSFATELPL 322
>LEG9_HUMAN (O00182) Galectin-9 (HOM-HD-21) (Ecalectin)| Length = 355 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%) Frame = -1 Query: 178 PPR-HGRRTRPVPLPGSWPPAGTWPRRRT-------APGEVLGSPALP 59 PPR GRR +P PG WP A P +T APG++ +PA+P Sbjct: 171 PPRPRGRRQKP---PGVWP-ANPAPITQTVIHTVQSAPGQMFSTPAIP 214
>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)| Length = 504 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 69 GLPSTSPGAVLRRGQVPAGGHEPGSGTGRVRRPCLG 176 G P+ + G R G G S TGR++RPC G Sbjct: 350 GAPAEAGGGWRRSGSTRTRGRAARSTTGRLQRPCCG 385
>AMY2_SCHPO (O42918) Probable alpha-amylase meu7 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Meiotic expression up-regulated protein 7) Length = 774 Score = 30.0 bits (66), Expect = 4.6 Identities = 29/122 (23%), Positives = 45/122 (36%) Frame = -1 Query: 475 RHKRNRSFQSQSFAHQLLPQIGMLKDRQMTHRSEG*SAPARALPSPGHMLYQHG*RLPYL 296 +H+ + S F + P G D + E S P P H P Sbjct: 224 KHEEHCSCHHDKFPRPV-PHNGTKPDHKPWKHEEHCSCHHDKFPRP----VPHNGTKPDH 278 Query: 295 RP*RQMQHWTCRNSGAPK*S*EHGSHGRA*GRRPWWRQKPPRHGRRTRPVPLPGSWPPAG 116 +P + +H C + P+ +G+ +PW ++ HGR RPVP G+ P Sbjct: 279 KPWKHEEH--CHHGKFPRPIPHNGTKP---DHKPWKHEEHCHHGRFPRPVPHNGTKPDHK 333 Query: 115 TW 110 W Sbjct: 334 PW 335 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -1 Query: 277 QHWTCRNSGAPK*S*EHGSHGRA*GRRPWWRQKPPRHGRRTRPVPLPGSWPPAGTW 110 +H +C + P+ +G+ +PW ++ HG+ RPVP G+ P W Sbjct: 171 EHCSCHHDKFPRPVPHNGTKP---DHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPW 223
>SYD_LISMO (Q8Y709) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 591 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 334 DQDLVKLALELTNLPICVSSVDPSAFQSAVEAGAQM 441 D+ ++ LEL N+ V VD FQSA+E G ++ Sbjct: 288 DKPDIRFGLELQNVSDVVKDVDFKVFQSAIENGGEV 323
>SYD_LISIN (Q92BJ4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 591 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 334 DQDLVKLALELTNLPICVSSVDPSAFQSAVEAGAQM 441 D+ ++ LEL N+ V VD FQSA+E G ++ Sbjct: 288 DKPDIRFGLELQNVSEVVKDVDFKVFQSAIENGGEV 323
>SF04_HUMAN (Q8IWZ8) Splicing factor 4 (RNA-binding protein RBP)| Length = 645 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -1 Query: 163 RRTRPVPLPGSWPPAGTWPRRRTAPGEVLGSPALP 59 R++ P L GS PPA T P T ++ +PA P Sbjct: 336 RKSPPEALSGSLPPATTCPASSTPAPTIIPAPAAP 370
>GLMM_BUCAI (P57461) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 444 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +1 Query: 367 TNLPICVSSVDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRE 522 T L C+ + S F ++ A A ++ G+++ FYD GI+ + + LT+E Sbjct: 73 TLLAGCMPTSAISYFTKSLNASAGIVISGSHNPFYDNGIKIFYKNGVKLTKE 124
>HOL3_HOLDI (Q25055) Holotricin-3 precursor| Length = 104 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -2 Query: 231 STVLTEGPEDGVLGGGRSRRGTDGEHGPCRSPAHGHRPALGRGEG 97 ++ + GP DG GG G G HG + HGH P G G G Sbjct: 16 ASAMPYGPGDG--HGGGHGGGHGGGHGNGQGGGHGHGPGGGFGGG 58
>POLG_HCVVP (O92532) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3014 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = -2 Query: 279 CNIGPVEI----LEPRNDLESTVLTEGPEDGVLGGGRSRRGTDGEHGPCRSPAHGHRPA 115 CN+ ++ L+P +E+T + P+D V R R G+HG R + G RP+ Sbjct: 1454 CNVTVTQVVDFSLDPTFTIETTTV---PQDAVSRSQRRGRTGRGKHGVYRYVSQGERPS 1509
>Y483_CHLPN (Q9Z868) Hypothetical protein CPn_0483/CP0271/CPj0483/CpB0503| Length = 1043 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -1 Query: 184 QKPPRHGRRTRP-VPLPGSWPPAGTWPRRRTAPGEVLGSPALP 59 ++PP+ G +P VP PG+ PP T P AP SPA P Sbjct: 95 KQPPKDGEDKKPDVPKPGTPPPEDTPPPPPKAP-----SPASP 132
>Y2251_LISIN (Q929M4) Hypothetical UPF0324 membrane protein lin2251| Length = 335 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +1 Query: 274 VASVVTAADKGGATHVDIACDQDLVKLALELTNLPIC 384 +A V+ AAD GG++ VD+A +VKL +P+C Sbjct: 196 IAHVIAAADPGGSSAVDMAV---IVKLTRVALLVPVC 229
>Y2179_LISMF (Q71XL9) Hypothetical UPF0324 membrane protein LMOf2365_2179| Length = 335 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +1 Query: 274 VASVVTAADKGGATHVDIACDQDLVKLALELTNLPIC 384 +A V+ AAD GG++ VD+A +VKL +P+C Sbjct: 196 IAHVIAAADPGGSSAVDMAV---IVKLTRVALLVPVC 229
>Y2147_LISMO (Q8Y5B8) Hypothetical UPF0324 membrane protein lmo2147| Length = 335 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +1 Query: 274 VASVVTAADKGGATHVDIACDQDLVKLALELTNLPIC 384 +A V+ AAD GG++ VD+A +VKL +P+C Sbjct: 196 IAHVIAAADPGGSSAVDMAV---IVKLTRVALLVPVC 229
>PRP3_RAT (P04474) Acidic proline-rich protein PRP33 precursor (Proline-rich| proteoglycan 1) Length = 206 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = -1 Query: 205 GRRPWWRQKPPRHGRRTRPVPLPGSWPPAGTWPRRRTAPGEVLGSP 68 G RP + PP G RP P PP P+ + PG G P Sbjct: 74 GNRP--ERPPPHGGNHQRPPPGHHHGPPPSGGPQTSSQPGNPQGPP 117
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 29.3 bits (64), Expect = 7.9 Identities = 22/65 (33%), Positives = 25/65 (38%) Frame = +3 Query: 3 RPRAAPYLFHPQQTFSSKNGSAGLPSTSPGAVLRRGQVPAGGHEPGSGTGRVRRPCLGGF 182 RP AP P + +AG PG G+ P GG PG G RP GGF Sbjct: 295 RPGGAPGGNRPNPGMMPQRPAAG---PRPGGGGPGGRGPGGGGRPGGPGGGGGRPGGGGF 351 Query: 183 CRHQG 197 G Sbjct: 352 AGRPG 356 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,166,453 Number of Sequences: 219361 Number of extensions: 1800890 Number of successful extensions: 7717 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 6946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7697 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
