ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15g23 |
|---|---|
| Clone Library Name | barley_pub |
>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)| Length = 1428 Score = 32.3 bits (72), Expect = 1.0 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = +2 Query: 338 CIGKTECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEEKGTKKFWICNSS 514 C G+ EC S +SS + C E E K + PHC + G ICN+S Sbjct: 253 CSGRGECKSSNSSSAVEC----------ECSENWKGESCDIPHCTDNCGFPHRGICNAS 301
>GNTX_SALTY (Q8ZLI8) Protein gntX| Length = 227 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = -2 Query: 276 CLQK---WQQIPRTGSYTDPLALLSHRVSCSTRS 184 CLQK WQ++ YT PL+LL H++ + RS Sbjct: 54 CLQKPPPWQRLVSVSDYTPPLSLLVHQLKFTRRS 87
>GNTX_SALTI (Q8Z222) Protein gntX| Length = 227 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = -2 Query: 276 CLQK---WQQIPRTGSYTDPLALLSHRVSCSTRS 184 CLQK WQ++ YT PL+LL H++ + RS Sbjct: 54 CLQKPPPWQRLVSVSDYTPPLSLLVHQLKFTRRS 87
>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)| Length = 1432 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = +2 Query: 338 CIGKTECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEEKGTKKFWICNSS 514 C G+ EC S +SS + C E E K + PHC + G ICN+S Sbjct: 257 CSGRGECKSSNSSSTVEC----------ECSENWKGESCDIPHCTDNCGFPHRGICNAS 305
>GAS1_MOUSE (Q01721) Growth-arrest-specific protein 1 precursor (GAS-1)| Length = 343 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Frame = +2 Query: 335 QCIGKTECSSCHSSYGILCRACLKVRYGEEM--------EEVRKNKKWMCP-HCV 472 QC G+ +CS +S Y C L R G + + +W CP HC+ Sbjct: 53 QCQGEPDCSYAYSQYAEACAPVLAQRGGADAPGPAGAFPASAASSPRWRCPSHCI 107
>GNTX_ECO57 (Q8X715) Protein gntX| Length = 227 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -2 Query: 276 CLQK---WQQIPRTGSYTDPLALLSHRVSCSTRS 184 CLQK WQ++ Y PL+LL H++ S RS Sbjct: 54 CLQKPPPWQRLVTVADYAPPLSLLIHQLKFSRRS 87
>UBP3_MOUSE (Q91W36) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)| (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) Length = 520 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Frame = +2 Query: 392 RACLKVRYGEEMEEVRKNKKWMCPHCVE-EKGTKKFWI--CNSSICLKKRK 535 R CL R ++EE+ + + +MC C + +K TKKFWI ++CL ++ Sbjct: 365 RDCL--RSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKR 413
>UBP3_HUMAN (Q9Y6I4) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)| (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) Length = 521 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +2 Query: 392 RACLKVRYGEEMEEVRKNKKWMCPHCVE-EKGTKKFWI 502 R CL R ++EE+ + + +MC C + +K TKKFWI Sbjct: 366 RDCL--RSFTDLEELDETELYMCHKCKKKQKSTKKFWI 401
>LEGJ_PEA (P05692) Legumin J precursor [Contains: Legumin J alpha chain| (Legumin J acidic chain); Legumin J beta chain (Legumin J basic chain)] Length = 503 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2 Query: 128 DAEEEDQEEKSPMYIDKERLRVLQETRCDSKARGSVYD 241 + EEED+EEK +ER L+ET C +K R ++ D Sbjct: 305 EEEEEDEEEKQR---SEERKNGLEETICSAKIRENIAD 339
>LEGK_PEA (P05693) Legumin K [Contains: Legumin K alpha chain (Legumin K| acidic chain); Legumin K beta chain (Legumin K basic chain)] (Fragment) Length = 350 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 134 EEEDQEEKSPMYIDKERLRVLQETRCDSKARGSVYD 241 EEE++EE +ER L+ET C +K R ++ D Sbjct: 151 EEEEEEEDEEKQRSEERKNGLEETICSAKIRENIAD 186
>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)| (ATP-dependent helicase CHD5) (CHD-5) Length = 1954 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +2 Query: 356 CSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEE 478 C +C +Y ++C E+E+ + K W CPHC +E Sbjct: 358 CDTCPRAYHLVC-------LDPELEKAPEGK-WSCPHCEKE 390
>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)| Length = 1429 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = +2 Query: 338 CIGKTECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEEKGTKKFWICNSS 514 C G+ EC +SS + C E E K + PHC + G ICNSS Sbjct: 254 CSGRGECKISNSSDTVEC----------ECSENWKGEACDIPHCTDNCGFPHRGICNSS 302
>HBXAP_HUMAN (Q96T23) Hepatitis B virus X-associated protein (HBV pX-associated| protein 8) (Remodeling and spacing factor 1) (Rsf-1) (p325 subunit of RSF chromatin remodelling complex) Length = 1431 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/61 (36%), Positives = 28/61 (45%) Frame = +2 Query: 62 SRRSARLNGDSVQHKALPYKGADAEEEDQEEKSPMYIDKERLRVLQETRCDSKARGSVYD 241 S+RS R G S Y AD EEE++EE P R+ +E CD+ A G Sbjct: 1257 SKRSVRKRGRSTDE----YSEAD-EEEEEEEGKPSRKRLHRIETDEEESCDN-AHGDANQ 1310 Query: 242 P 244 P Sbjct: 1311 P 1311
>RIPK2_HUMAN (O43353) Receptor-interacting serine/threonine-protein kinase 2 (EC| 2.7.11.1) (RIP-like-interacting CLARP kinase) (Receptor-interacting protein 2) (RIP-2) (CARD-containing interleukin-1 beta-converting enzyme-associated kinase) (CARD-containi Length = 540 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +2 Query: 170 IDKERLRVLQETRCDSKARGSVYDPVLGIC 259 +D ER VL+E KAR S P+LGIC Sbjct: 56 LDSERKDVLREAEILHKARFSYILPILGIC 85
>FXL19_HUMAN (Q6PCT2) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat| protein 19) Length = 674 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +2 Query: 353 ECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEEKGTKK 493 EC+ C+ I+ CLK+ E + W CP C +E T K Sbjct: 93 ECTICNE---IVHPGCLKMGKAEGVINAEIPNCWECPRCTQEGRTSK 136
>Y5G6_ENCCU (Q8STG4) Hypothetical protein ECU05_1660/ECU11_0070| Length = 239 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = -2 Query: 561 NMAIPVGAIFLF----FKQMELLHIQNFLVPFSSTQ*GHIHFLFFLTSSISSPYRTLRQA 394 ++A+P+ F+F FK+ LL L+PFS + ++ L+ S P TL +A Sbjct: 36 SVALPIAMYFIFDKDRFKEDPLLRFATILLPFSYSATQYLFLLYANWKSNYKPEDTLHKA 95
>VE2_HPV22 (P50768) Regulatory protein E2| Length = 436 Score = 29.3 bits (64), Expect = 8.8 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -3 Query: 398 RHGRVSHRRNGRRSTPSSLCIAAQSLLPRSACNPPRRRVSSACRNGSRSQERGR 237 R +V+HR + S+P+ I Q R P RR + R+ S Q GR Sbjct: 225 RSSQVTHRYGRKASSPTITTIRRQKRRERQRQETPTRRRKTRSRSRSTEQRGGR 278
>ING5_MOUSE (Q9D8Y8) Inhibitor of growth protein 5| Length = 240 Score = 29.3 bits (64), Expect = 8.8 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +2 Query: 449 KWMCPHCVEEKGTKK 493 KW CP CV+EK KK Sbjct: 226 KWFCPRCVQEKRKKK 240
>ING5_HUMAN (Q8WYH8) Inhibitor of growth protein 5 (p28ING5)| Length = 240 Score = 29.3 bits (64), Expect = 8.8 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +2 Query: 449 KWMCPHCVEEKGTKK 493 KW CP CV+EK KK Sbjct: 226 KWFCPRCVQEKRKKK 240
>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)| Length = 1915 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +2 Query: 356 CSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEE 478 C +C +Y ++C +ME+ + K W CPHC +E Sbjct: 378 CDTCPRAYHMVC-------LDPDMEKAPEGK-WSCPHCEKE 410
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +2 Query: 356 CSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEE 478 C +C +Y ++C +ME+ + K W CPHC +E Sbjct: 385 CDTCPRAYHMVC-------LDPDMEKAPEGK-WSCPHCEKE 417 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,756,363 Number of Sequences: 219361 Number of extensions: 1334171 Number of successful extensions: 5187 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5165 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
