| Clone Name | bags15g20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482151.1| Oryza sativa (japonica cultivar-group), mRNA Length = 843 Score = 149 bits (75), Expect = 1e-32 Identities = 186/223 (83%) Strand = Plus / Plus Query: 276 gacatctacgagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttg 335 ||||| || |||||||||||| ||||| | ||| | ||||||||||||| |||||| || Sbjct: 346 gacatttaggagctatacaaaagaagagatctcagcacacaacacaaggacggattgctg 405 Query: 336 gatcataatcaaggacaaggtttatgatgtaactccatacgtggaggaacatccaggtgg 395 | |||| |||||||| |||||||| ||||| || | || ||||||||||||||||| || Sbjct: 406 ggtcatcatcaaggataaggtttacgatgtcacctcttatgtggaggaacatccaggggg 465 Query: 396 tgatgccattctaaacaatgctggcagcgattcgacagagggatttttcggcccgcagca 455 |||||||| |||||||||||||| | ||||||||||| |||||||| ||||| || || Sbjct: 466 agatgccatcctaaacaatgctggtggtgattcgacagaaggattttttggccctcaaca 525 Query: 456 tggcacacgagtcttcgacatcatcgaggatttctgcatcggc 498 |||| ||||||| || ||||| || ||||||||||||||| Sbjct: 526 tggcttcagagtctttgagatcattgaagatttctgcatcggc 568
>ref|XM_507217.1| PREDICTED Oryza sativa (japonica cultivar-group), P0434E03.7 mRNA Length = 870 Score = 149 bits (75), Expect = 1e-32 Identities = 186/223 (83%) Strand = Plus / Plus Query: 276 gacatctacgagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttg 335 ||||| || |||||||||||| ||||| | ||| | ||||||||||||| |||||| || Sbjct: 287 gacatttaggagctatacaaaagaagagatctcagcacacaacacaaggacggattgctg 346 Query: 336 gatcataatcaaggacaaggtttatgatgtaactccatacgtggaggaacatccaggtgg 395 | |||| |||||||| |||||||| ||||| || | || ||||||||||||||||| || Sbjct: 347 ggtcatcatcaaggataaggtttacgatgtcacctcttatgtggaggaacatccaggggg 406 Query: 396 tgatgccattctaaacaatgctggcagcgattcgacagagggatttttcggcccgcagca 455 |||||||| |||||||||||||| | ||||||||||| |||||||| ||||| || || Sbjct: 407 agatgccatcctaaacaatgctggtggtgattcgacagaaggattttttggccctcaaca 466 Query: 456 tggcacacgagtcttcgacatcatcgaggatttctgcatcggc 498 |||| ||||||| || ||||| || ||||||||||||||| Sbjct: 467 tggcttcagagtctttgagatcattgaagatttctgcatcggc 509
>dbj|AK070379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054P20, full insert sequence Length = 870 Score = 149 bits (75), Expect = 1e-32 Identities = 186/223 (83%) Strand = Plus / Plus Query: 276 gacatctacgagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttg 335 ||||| || |||||||||||| ||||| | ||| | ||||||||||||| |||||| || Sbjct: 287 gacatttaggagctatacaaaagaagagatctcagcacacaacacaaggacggattgctg 346 Query: 336 gatcataatcaaggacaaggtttatgatgtaactccatacgtggaggaacatccaggtgg 395 | |||| |||||||| |||||||| ||||| || | || ||||||||||||||||| || Sbjct: 347 ggtcatcatcaaggataaggtttacgatgtcacctcttatgtggaggaacatccaggggg 406 Query: 396 tgatgccattctaaacaatgctggcagcgattcgacagagggatttttcggcccgcagca 455 |||||||| |||||||||||||| | ||||||||||| |||||||| ||||| || || Sbjct: 407 agatgccatcctaaacaatgctggtggtgattcgacagaaggattttttggccctcaaca 466 Query: 456 tggcacacgagtcttcgacatcatcgaggatttctgcatcggc 498 |||| ||||||| || ||||| || ||||||||||||||| Sbjct: 467 tggcttcagagtctttgagatcattgaagatttctgcatcggc 509
>dbj|AK059323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H10, full insert sequence Length = 842 Score = 141 bits (71), Expect = 3e-30 Identities = 185/223 (82%) Strand = Plus / Plus Query: 276 gacatctacgagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttg 335 ||||| || |||||||||||| ||||| | ||| | ||||||||||||| |||||| || Sbjct: 346 gacatttaggagctatacaaaagaagagatctcagcacacaacacaaggacggattgctg 405 Query: 336 gatcataatcaaggacaaggtttatgatgtaactccatacgtggaggaacatccaggtgg 395 | |||| |||||||| |||||||| ||||| || | || ||||||||| ||||||| || Sbjct: 406 ggtcatcatcaaggataaggtttacgatgtcacctcttatgtggaggaatatccaggggg 465 Query: 396 tgatgccattctaaacaatgctggcagcgattcgacagagggatttttcggcccgcagca 455 |||||||| |||||||||||||| | ||||||||||| |||||||| ||||| || || Sbjct: 466 agatgccatcctaaacaatgctggtggtgattcgacagaaggattttttggccctcaaca 525 Query: 456 tggcacacgagtcttcgacatcatcgaggatttctgcatcggc 498 |||| ||||||| || ||||| || ||||||||||||||| Sbjct: 526 tggcttcagagtctttgagatcattgaagatttctgcatcggc 568
>gb|AY110378.1| Zea mays CL14316_2 mRNA sequence Length = 844 Score = 125 bits (63), Expect = 2e-25 Identities = 148/180 (82%) Strand = Plus / Minus Query: 318 cacaaggaaggattgttggatcataatcaaggacaaggtttatgatgtaactccatacgt 377 ||||||| |||| ||||||||||| |||||||||||||| |||||||| ||||| || || Sbjct: 582 cacaagggaggactgttggatcattatcaaggacaaggtctatgatgtcactccttatgt 523 Query: 378 ggaggaacatccaggtggtgatgccattctaaacaatgctggcagcgattcgacagaggg 437 |||||||||||||| || |||||||||||||| |||||| ||||| || ||||| Sbjct: 522 agaggaacatccaggcggagatgccattctaaataatgctnnnnntgattccacggaggg 463 Query: 438 atttttcggcccgcagcatggcacacgagtcttcgacatcatcgaggatttctgcatcgg 497 || || ||||||||||| | |||||||| ||||||||||||||||||||||| Sbjct: 462 cnnnnnngggccacagcatggcactagggtcttcgatatcatcgaggatttctgcatcgg 403
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 3e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 285 gagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttggatcataat 344 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | Sbjct: 10079911 gagctatacaaagaaagaggtatcgactcacaacacaaggaaggattgttggatcatagt 10079852 Query: 345 caaggacaaggtt 357 ||||||||||||| Sbjct: 10079851 caaggacaaggtt 10079839 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 376 gtggaggaacatccaggtggtgatgccattctaaacaatgctggcagcgattcgacagag 435 ||||||||||||||||||||||||| |||||||||||||| || | ||||| |||||| Sbjct: 10079701 gtggaggaacatccaggtggtgatgaaattctaaacaatgccggtggtgattcaacagag 10079642 Query: 436 ggattttt 443 |||||||| Sbjct: 10079641 ggattttt 10079634 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 464 gagtcttcgacatcatcgaggatttctgcatcggcaaattggaagactgatgatga 519 |||||||||| |||||||| |||||||||||||||||| || | |||||||||||| Sbjct: 10078893 gagtcttcgagatcatcgaagatttctgcatcggcaaactgaaggactgatgatga 10078838
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 121 bits (61), Expect = 3e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 285 gagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttggatcataat 344 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | Sbjct: 109215 gagctatacaaagaaagaggtatcgactcacaacacaaggaaggattgttggatcatagt 109156 Query: 345 caaggacaaggtt 357 ||||||||||||| Sbjct: 109155 caaggacaaggtt 109143 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 376 gtggaggaacatccaggtggtgatgccattctaaacaatgctggcagcgattcgacagag 435 ||||||||||||||||||||||||| |||||||||||||| || | ||||| |||||| Sbjct: 109005 gtggaggaacatccaggtggtgatgaaattctaaacaatgccggtggtgattcaacagag 108946 Query: 436 ggattttt 443 |||||||| Sbjct: 108945 ggattttt 108938 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 464 gagtcttcgacatcatcgaggatttctgcatcggcaaattggaagactgatgatga 519 |||||||||| |||||||| |||||||||||||||||| || | |||||||||||| Sbjct: 108197 gagtcttcgagatcatcgaagatttctgcatcggcaaactgaaggactgatgatga 108142
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 121 bits (61), Expect = 3e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 285 gagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttggatcataat 344 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | Sbjct: 39589 gagctatacaaagaaagaggtatcgactcacaacacaaggaaggattgttggatcatagt 39530 Query: 345 caaggacaaggtt 357 ||||||||||||| Sbjct: 39529 caaggacaaggtt 39517 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 376 gtggaggaacatccaggtggtgatgccattctaaacaatgctggcagcgattcgacagag 435 ||||||||||||||||||||||||| |||||||||||||| || | ||||| |||||| Sbjct: 39379 gtggaggaacatccaggtggtgatgaaattctaaacaatgccggtggtgattcaacagag 39320 Query: 436 ggattttt 443 |||||||| Sbjct: 39319 ggattttt 39312 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 464 gagtcttcgacatcatcgaggatttctgcatcggcaaattggaagactgatgatga 519 |||||||||| |||||||| |||||||||||||||||| || | |||||||||||| Sbjct: 38571 gagtcttcgagatcatcgaagatttctgcatcggcaaactgaaggactgatgatga 38516
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 376 gtggaggaacatccaggtggtgatgccattctaaacaatgctggcagcgattcgacagag 435 ||||||||||||||||| || |||||||| |||||||||||||| | ||||||||||| Sbjct: 18215708 gtggaggaacatccagggggagatgccatcctaaacaatgctggtggtgattcgacagaa 18215649 Query: 436 ggattttt 443 |||||||| Sbjct: 18215648 ggattttt 18215641 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 276 gacatctacgagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttg 335 ||||| || |||||||||||| ||||| | ||| | ||||||||||||| |||||| || Sbjct: 18215915 gacatttaggagctatacaaaagaagagatctcagcacacaacacaaggacggattgctg 18215856 Query: 336 gatcataatcaaggacaaggtt 357 | |||| |||||||| |||||| Sbjct: 18215855 ggtcatcatcaaggataaggtt 18215834
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 376 gtggaggaacatccaggtggtgatgccattctaaacaatgctggcagcgattcgacagag 435 ||||||||||||||||| || |||||||| |||||||||||||| | ||||||||||| Sbjct: 38020 gtggaggaacatccagggggagatgccatcctaaacaatgctggtggtgattcgacagaa 37961 Query: 436 ggattttt 443 |||||||| Sbjct: 37960 ggattttt 37953 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 276 gacatctacgagctatacaaagaaagaggtgtcaactcacaacacaaggaaggattgttg 335 ||||| || |||||||||||| ||||| | ||| | ||||||||||||| |||||| || Sbjct: 38227 gacatttaggagctatacaaaagaagagatctcagcacacaacacaaggacggattgctg 38168 Query: 336 gatcataatcaaggacaaggtt 357 | |||| |||||||| |||||| Sbjct: 38167 ggtcatcatcaaggataaggtt 38146
>gb|AY110094.1| Zea mays CL14316_-3 mRNA sequence Length = 606 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/113 (80%) Strand = Plus / Minus Query: 385 catccaggtggtgatgccattctaaacaatgctggcagcgattcgacagagggatttttc 444 |||||||| || |||||||||||||| |||||||| | ||||| |||||||| Sbjct: 557 catccaggcggagatgccattctaaataatgctggtggtgattccacagagggcnnnnnn 498 Query: 445 ggcccgcagcatggcacacgagtcttcgacatcatcgaggatttctgcatcgg 497 || || || || ||||| | |||||||| ||||||||||||||||||||||| Sbjct: 497 gggccacaacacggcactagggtcttcgatatcatcgaggatttctgcatcgg 445
>gb|AY267693.1| Bigelowiella natans nitrate reductase mRNA, complete cds; nuclear gene for plastid product Length = 872 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 328 gattgttggatcataatcaaggacaaggtttatgatgtaactccatacgtggaggaacat 387 ||||||||||| || |||||||||||||||||||||| || ||||| | ||| ||||| Sbjct: 385 gattgttggattatcatcaaggacaaggtttatgatgcgacatcataccttgagaaacat 444 Query: 388 ccaggtggtg 397 ||||| |||| Sbjct: 445 ccagggggtg 454
>ref|NM_104749.2| Arabidopsis thaliana B5 #5 AT1G60660 (B5 #5) mRNA, complete cds Length = 601 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 316 aacacaaggaaggattgttggatcataatcaaggacaaggtttatgatgtaactccatac 375 |||| |||||| |||||||||||||||||||| || || || |||||| | ||| | || Sbjct: 232 aacaaaaggaacgattgttggatcataatcaaagataaagtctatgatattacttcttat 291 Query: 376 gtggaggaacatccaggtggtgatgccattct 407 || || |||||||| |||||||| || ||||| Sbjct: 292 gttgaagaacatcctggtggtgacgctattct 323
>gb|AY133575.1| Arabidopsis thaliana At1g60660/F8A5_18 mRNA, complete cds Length = 366 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 316 aacacaaggaaggattgttggatcataatcaaggacaaggtttatgatgtaactccatac 375 |||| |||||| |||||||||||||||||||| || || || |||||| | ||| | || Sbjct: 172 aacaaaaggaacgattgttggatcataatcaaagataaagtctatgatattacttcttat 231 Query: 376 gtggaggaacatccaggtggtgatgccattct 407 || || |||||||| |||||||| || ||||| Sbjct: 232 gttgaagaacatcctggtggtgacgctattct 263
>gb|AY049297.1| Arabidopsis thaliana At1g60660/F8A5_18 mRNA, complete cds Length = 601 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 316 aacacaaggaaggattgttggatcataatcaaggacaaggtttatgatgtaactccatac 375 |||| |||||| |||||||||||||||||||| || || || |||||| | ||| | || Sbjct: 232 aacaaaaggaacgattgttggatcataatcaaagataaagtctatgatattacttcttat 291 Query: 376 gtggaggaacatccaggtggtgatgccattct 407 || || |||||||| |||||||| || ||||| Sbjct: 292 gttgaagaacatcctggtggtgacgctattct 323
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 316 aacacaaggaaggattgttggatcataatcaaggacaaggtttatgatgtaactccatac 375 |||| |||||| |||||||||||||||||||| || || || |||||| | ||| | || Sbjct: 66773 aacaaaaggaacgattgttggatcataatcaaagataaagtctatgatattacttcttat 66714 Query: 376 gtggaggaacatccaggtggtgatgccattct 407 || || |||||||| |||||||| || ||||| Sbjct: 66713 gttgaagaacatcctggtggtgacgctattct 66682
>ref|NM_124258.2| Arabidopsis thaliana ATB5-B AT5G48810 (ATB5-B) mRNA, complete cds Length = 1119 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 164 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 204
>emb|AL391988.14| Human DNA sequence from clone RP11-129M16 on chromosome 10 Contains the 3' end of the SLC18A2 gene for member 2 solute carrier family 18 (vesicular monoamine) and the 3' end of gene LOC118987, complete sequence Length = 104711 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 aggaacatccaggtggtgatg 400 ||||||||||||||||||||| Sbjct: 45102 aggaacatccaggtggtgatg 45082
>gb|AY063073.1| Arabidopsis thaliana putative cytochrome b5 protein (At5g48810) mRNA, complete cds Length = 454 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 58 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 98
>gb|AF370256.1| Arabidopsis thaliana putative cytochrome b5 protein (At5g48810) mRNA, complete cds Length = 702 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 144 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 184
>emb|AJ001370.1|OEJ001370 Olea europaea cytochrome b5 gene-2 Length = 752 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Plus Query: 352 aaggtttatgatgtaactccatacgtggaggaacatccaggtggtgatg 400 ||||||||||||||||| |||| | |||| || ||||| || ||||||| Sbjct: 167 aaggtttatgatgtaaccccattcatggatgatcatcctggaggtgatg 215
>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete sequence Length = 101598 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 tcataatcaaggacaaggttt 358 ||||||||||||||||||||| Sbjct: 74914 tcataatcaaggacaaggttt 74934
>emb|BX829982.1|CNS0A1B1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB51ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 622 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 112 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 152
>emb|BX841663.1|CNS09YKX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS59ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 620 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 125 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 165
>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete sequence Length = 240555 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 tcataatcaaggacaaggttt 358 ||||||||||||||||||||| Sbjct: 81694 tcataatcaaggacaaggttt 81714
>gb|AY086738.1| Arabidopsis thaliana clone 27167 mRNA, complete sequence Length = 706 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 164 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 204
>dbj|AB007802.1| Arabidopsis thaliana mRNA for cytochrome b5, complete cds Length = 631 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgt 365 ||||||||||||||| | ||| | | ||||||||||||||| Sbjct: 85 aaggattgttggatcgtcatcgacggcaaggtttatgatgt 125
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 tctgcaatttcctgaagatga 585 ||||||||||||||||||||| Sbjct: 1735887 tctgcaatttcctgaagatga 1735867
>gb|AC005880.3|AC005880 citb_43_a_11, complete sequence Length = 146388 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 aggaacatccaggtggtgatg 400 ||||||||||||||||||||| Sbjct: 83928 aggaacatccaggtggtgatg 83908
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 tcagggggaaatcgaacgaca 279 ||||||||||||||||||||| Sbjct: 2412373 tcagggggaaatcgaacgaca 2412353
>ref|NM_005332.2| Homo sapiens hemoglobin, zeta (HBZ), mRNA Length = 589 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 38 gctgcccaccctgccgccat 57
>gb|BC058676.1| Mus musculus cache domain containing 1, mRNA (cDNA clone MGC:76350 IMAGE:6834428), complete cds Length = 4981 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 4596 gtgcttctggtgctgggagcactc 4573
>gb|BC080313.1| Mus musculus cache domain containing 1, mRNA (cDNA clone IMAGE:6854599), partial cds Length = 4067 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 2880 gtgcttctggtgctgggagcactc 2857
>gb|BC057356.1| Mus musculus cache domain containing 1, mRNA (cDNA clone IMAGE:6834152), partial cds Length = 4063 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 2882 gtgcttctggtgctgggagcactc 2859
>gb|AC155304.4| Mus musculus BAC clone RP24-212I6 from chromosome 8, complete sequence Length = 165128 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 tgaagatgatgacaacgaac 596 |||||||||||||||||||| Sbjct: 605 tgaagatgatgacaacgaac 624
>ref|NM_198037.1| Mus musculus cache domain containing 1 (Cachd1), mRNA Length = 4981 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 4596 gtgcttctggtgctgggagcactc 4573
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 agggatttttcggcccgcagcatg 457 |||||||||||||| ||||||||| Sbjct: 277017 agggatttttcggcacgcagcatg 277040
>gb|J00182.1|HUMHBA1 Homo sapiens hemoglobin zeta (HBZ) gene, exons 1 through 3 and complete cds Length = 2685 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 807 gctgcccaccctgccgccat 826
>ref|XM_596512.2| PREDICTED: Bos taurus similar to Doublecortin domain-containing protein 2 (RU2S protein) (LOC518323), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 atgatgacaacgaacaaaac 601 |||||||||||||||||||| Sbjct: 1391 atgatgacaacgaacaaaac 1410
>ref|NG_000006.1| Homo sapiens alpha globin region (HBA@) on chromosome 16 Length = 43058 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 13755 gctgcccaccctgccgccat 13774
>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence Length = 198036 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 579 aagatgatgacaacgaacaaaaccgttt 606 |||||||||||||| |||||||| |||| Sbjct: 86161 aagatgatgacaacaaacaaaactgttt 86188
>ref|XM_455476.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F08723g predicted mRNA Length = 1311 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 gaagatgatgacaacgaaca 597 |||||||||||||||||||| Sbjct: 466 gaagatgatgacaacgaaca 485
>ref|XR_003347.1| PREDICTED: Mus musculus similar to pescadillo homolog 1, containing BRCT domain (LOC546077), mRNA Length = 2141 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 tgaagatgatgacaacgaac 596 |||||||||||||||||||| Sbjct: 1426 tgaagatgatgacaacgaac 1445
>ref|XM_991872.1| PREDICTED: Mus musculus cache domain containing 1, transcript variant 2 (Cachd1), mRNA Length = 1830 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 655 gtgcttctggtgctgggagcactc 632
>ref|XM_991843.1| PREDICTED: Mus musculus cache domain containing 1, transcript variant 1 (Cachd1), mRNA Length = 1820 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 645 gtgcttctggtgctgggagcactc 622
>ref|XM_991907.1| PREDICTED: Mus musculus cache domain containing 1, transcript variant 3 (Cachd1), mRNA Length = 5321 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 4146 gtgcttctggtgctgggagcactc 4123
>emb|CR728646.2|CNS0GP64 Tetraodon nigroviridis full-length cDNA Length = 1434 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tgtgcttcttgtgctgggag 205 |||||||||||||||||||| Sbjct: 84 tgtgcttcttgtgctgggag 65
>emb|AL031602.14|HS1174N9 Human DNA sequence from clone RP5-1174N9 on chromosome 1p34.1-35.3 Contains the gene for a novel protein (FLJ90005) and two CpG islands, complete sequence Length = 72930 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cgccatcccgcccccgccgctcgc 50 |||||||||||||||||| ||||| Sbjct: 5875 cgccatcccgcccccgcccctcgc 5852
>gb|AY300015.1| Brassica juncea cytoplasmic male sterility-associated cytochrome oxidase subunit I (coxI-2) gene, complete cds; mitochondrial gene for mitochondrial product Length = 6244 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 aaacaaaggtgaaggaaagg 250 |||||||||||||||||||| Sbjct: 1206 aaacaaaggtgaaggaaagg 1187
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 gaagatgatgacaacgaaca 597 |||||||||||||||||||| Sbjct: 813857 gaagatgatgacaacgaaca 813838
>emb|BX927153.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 6/10 Length = 349584 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 gtcttcgacatcatcgaggatttc 489 ||||||||| |||||||||||||| Sbjct: 271454 gtcttcgacttcatcgaggatttc 271477
>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11 Length = 346161 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 atccaaaaacaaaggtgaag 244 |||||||||||||||||||| Sbjct: 174261 atccaaaaacaaaggtgaag 174280
>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence Length = 182428 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 tgaagatgatgacaacgaac 596 |||||||||||||||||||| Sbjct: 169511 tgaagatgatgacaacgaac 169530
>gb|DQ431198.1| Homo sapiens interleukin 9 receptor (IL9Rps) pseudogene, complete sequence; and DNA-directed RNA polymerases III 12.5 kDa polypeptide (POLR3K), U11/U12 snRNP 25 kDa protein (C16orf33), RHBDG1 (C16orf8), DNA-3-methyladenine glycosylase (MPG), -14 gene protein (C16orf35), hemoglobin zeta subunit (HBZ), HBD (HBD), alpha globin (HBA2), alpha globin (HBA1), theta globin (HBQ1), and putative RNA-binding protein Luc7-like 1 (LUC7L) genes, complete cds Length = 214426 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 133634 gctgcccaccctgccgccat 133653 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 122917 gctgcccaccctgccgccat 122936
>gb|AE006462.1| Homo sapiens 16p13.3 sequence section 1 of 8 Length = 258002 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 142891 gctgcccaccctgccgccat 142910
>emb|BX530081.6| Zebrafish DNA sequence from clone CH211-121B13 in linkage group 14, complete sequence Length = 162058 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ccgcccccgccgctcgcccc 53 |||||||||||||||||||| Sbjct: 147385 ccgcccccgccgctcgcccc 147404
>dbj|AB234906.1| Verbena x hybrida mRNA for anthocyanidin synthase, complete cds, cultivar: Tapien Pink Length = 1375 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ggaagactgatgatgaggag 523 |||||||||||||||||||| Sbjct: 1106 ggaagactgatgatgaggag 1125
>gb|AC108089.2| Homo sapiens chromosome 5 clone CTD-2313B8, complete sequence Length = 133225 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 agctcccaagtgtgaaccca 556 |||||||||||||||||||| Sbjct: 108624 agctcccaagtgtgaaccca 108605
>gb|AC022139.5| Homo sapiens chromosome 5 clone CTD-2255L15, complete sequence Length = 112978 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 agctcccaagtgtgaaccca 556 |||||||||||||||||||| Sbjct: 7859 agctcccaagtgtgaaccca 7840
>gb|AC159911.7| Mus musculus 10 BAC RP23-465M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203420 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 ccatggaaattatcatcctcatat 178 ||||||||||| |||||||||||| Sbjct: 128546 ccatggaaattttcatcctcatat 128523
>dbj|AK004514.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190007F10 product:unclassifiable, full insert sequence Length = 289 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 102 gtgcttctggtgctgggagcactc 79
>gb|DQ019482.1| Lilium longiflorum clone LP26 cytochome b5-like mRNA, partial sequence Length = 692 Score = 40.1 bits (20), Expect = 8.7 Identities = 62/76 (81%) Strand = Plus / Plus Query: 325 aaggattgttggatcataatcaaggacaaggtttatgatgtaactccatacgtggaggaa 384 |||||||||||| |||| ||| | |||||| |||||||| || |||| ||||||| Sbjct: 99 aaggattgttggctcatcatctctggcaaggtgtatgatgtcaccccatttatggaggac 158 Query: 385 catccaggtggtgatg 400 ||||| |||||||||| Sbjct: 159 catcctggtggtgatg 174
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 gtcttcgacatcatcgaggatttc 489 ||||||||| |||||||||||||| Sbjct: 2046846 gtcttcgacttcatcgaggatttc 2046869
>gb|AC008278.3|AC008278 Homo sapiens BAC clone RP11-422A6 from 2, complete sequence Length = 136868 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ggaaattatcatcctcatat 178 |||||||||||||||||||| Sbjct: 14194 ggaaattatcatcctcatat 14175
>emb|BX248502.17| Zebrafish DNA sequence from clone DKEY-284M10 in linkage group 8, complete sequence Length = 215273 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cagtcaattatacattgttc 136 |||||||||||||||||||| Sbjct: 127376 cagtcaattatacattgttc 127357
>gb|BC027892.1| Homo sapiens hemoglobin, zeta, mRNA (cDNA clone MGC:34397 IMAGE:5224569), complete cds Length = 617 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 18 gctgcccaccctgccgccat 37
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aaacaaaggtgaaggaaagg 250 |||||||||||||||||||| Sbjct: 356753 aaacaaaggtgaaggaaagg 356772
>emb|AL592225.17| Mouse DNA sequence from clone RP23-278M14 on chromosome 1, complete sequence Length = 183397 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 aaaacaaaggtgaaggaaag 249 |||||||||||||||||||| Sbjct: 179657 aaaacaaaggtgaaggaaag 179638
>gb|M24173.1|HUMXIHB Human zeta hemoglobin mRNA, complete cds Length = 458 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 12 gctgcccaccctgccgccat 31
>emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chromosome 4, complete sequence Length = 184644 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgcttcttgtgctgggagcactc 210 |||||||| ||||||||||||||| Sbjct: 140782 gtgcttctggtgctgggagcactc 140759
>emb|Z84721.1|HSGG1 Human DNA sequence from cosmid GG1 from a contig from the tip of the short arm of chromosome 16, spanning 2Mb of 16p13.3 Contains alpha and zeta globin genes and ESTs Length = 43058 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gctgcccaccctgccgccat 32 |||||||||||||||||||| Sbjct: 13755 gctgcccaccctgccgccat 13774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,618,786 Number of Sequences: 3902068 Number of extensions: 5618786 Number of successful extensions: 115245 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114892 Number of HSP's gapped (non-prelim): 349 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)