>RFC5_SCHPO (O94697) Probable activator 1 subunit 5 (Replication factor C|
           subunit 5) (Replication factor C5)
          Length = 358

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 47/190 (24%), Positives = 96/190 (50%), Gaps = 2/190 (1%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           D+YRP  L     +K +++ L  + +  +  H +  G    GK++ V+A+LR+ +GP + 
Sbjct: 5   DQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSE 64

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
           K+ +I +R  L    +K + + +  S HH+E+  +D+  Y++ ++  LL +      +  
Sbjct: 65  KL-KIDQRTFLTPS-SKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDL 122

Query: 369 DHANC-KVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVR 542
                 KV+V++ AD L+ D Q  +   + +Y+   ++I         +E +     +VR
Sbjct: 123 QAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVR 182

Query: 543 LKPPSFDEII 572
           +  P+ +EII
Sbjct: 183 VAAPTPEEII 192

>RFC3_MOUSE (Q8R323) Activator 1 38 kDa subunit (Replication factor C 38 kDa|
           subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit)
           (RFC38) (Replication factor C subunit 3)
          Length = 356

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAF--GPD 182
           D+YRPS L     +K  A +L  +V      H +  G    GK++ ++ +LR+ +  G +
Sbjct: 6   DKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVE 65

Query: 183 NLKMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDL 362
            L++E  T     K    K I++    S++H+EVN +D    ++ VI  +L        L
Sbjct: 66  KLRIEHQTITTPSK----KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQL 121

Query: 363 -ICDHANCKVIVVHDADRLSSDLQHYIGWFLGRY-AGCNKIIFXXXXXXNLESVEHLCKV 536
                 + KV+++ + D+L+ D QH +   + +Y + C  I+        +  +   C  
Sbjct: 122 ETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 181

Query: 537 VRLKPPSFDEI 569
           VR+  PS ++I
Sbjct: 182 VRVPAPSIEDI 192

>RFC3_HUMAN (P40938) Activator 1 38 kDa subunit (Replication factor C 38 kDa|
           subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit)
           (RFC38) (Replication factor C subunit 3)
          Length = 356

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 4/191 (2%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGP--D 182
           D+YRP  LG    +K  A +L  +V      H +  G    GK++ ++ +LR+ +G   +
Sbjct: 6   DKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVE 65

Query: 183 NLKMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDL 362
            L++E  T     K    K I++    S++H+EVN +D    ++ VI  +L        L
Sbjct: 66  KLRIEHQTITTPSK----KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQL 121

Query: 363 ICD-HANCKVIVVHDADRLSSDLQHYIGWFLGRY-AGCNKIIFXXXXXXNLESVEHLCKV 536
             +   + KV+++ + D+L+ D QH +   + +Y + C  I+        +  +   C  
Sbjct: 122 ETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 181

Query: 537 VRLKPPSFDEI 569
           VR+  PS ++I
Sbjct: 182 VRVPAPSIEDI 192

>RFC5_NEUCR (Q8X082) Probable activator 1 subunit 5 (Replication factor C|
           subunit 5) (Replication factor C5)
          Length = 352

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 42/189 (22%), Positives = 91/189 (48%), Gaps = 2/189 (1%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           D++RP  L     +  +++ L  +       H +  G    GK++ ++A L++ +GP   
Sbjct: 6   DKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGVE 65

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDL-I 365
           K+ +I  R+  +    + ++  +  S +H+E+  +D+  Y++ V+  LL E      + +
Sbjct: 66  KI-KIDARV-FQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDL 123

Query: 366 CDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVR 542
                 KV+V+++AD L+ D Q  +   + +Y+   ++I       N +  +   C +VR
Sbjct: 124 SAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVR 183

Query: 543 LKPPSFDEI 569
           +  P+  EI
Sbjct: 184 VAAPTHKEI 192

>RFC5_YEAST (P38251) Activator 1 40 kDa subunit (Replication factor C subunit|
           5) (Replication factor C5)
          Length = 354

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 41/195 (21%), Positives = 87/195 (44%), Gaps = 8/195 (4%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTE-RQCNHFIFEGAQAVGKRSMVLALLRDAFGPDN 185
           D+YRP  L     N+ + + L  +  + R   H +  G    GK++  +ALL   FGP  
Sbjct: 6   DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65

Query: 186 LKMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLI 365
            +++   ++        + +++ V  S +H+E+  +D+   ++ VI  LL E      + 
Sbjct: 66  YRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123

Query: 366 CDHA------NCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEH 524
              +        K +++++A+ L+ D Q  +   + +Y+   ++I         +  ++ 
Sbjct: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183

Query: 525 LCKVVRLKPPSFDEI 569
            C ++R   PS  EI
Sbjct: 184 RCLLIRCPAPSDSEI 198

>RFCS_SULAC (Q4JAB0) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 325

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 1/190 (0%)
 Frame = +3

Query: 6   ADRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDN 185
           A++YRP  L E +  K + + L + V E+   H +F G    GK +  LAL+RD +G +N
Sbjct: 8   AEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYG-NN 66

Query: 186 LKMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLI 365
            +       +EL     + IDV               +    K    T+ + ++P     
Sbjct: 67  YRQ----YFLELNASDERGIDV---------------IRNKVKEFARTVASNNVP----- 102

Query: 366 CDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVR 542
                 KVI++ +AD +++D Q  +   +  Y    + I         +E ++    + R
Sbjct: 103 -----FKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFR 157

Query: 543 LKPPSFDEII 572
             P   ++++
Sbjct: 158 FYPLKKEDVV 167

>RFCS_ARCFU (O28219) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) (afRFC small subunit)
           (afRFCsm)
          Length = 319

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 1/182 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L E +    V   L   V  +   H +F G    GK +  +AL RD FG +N 
Sbjct: 9   EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENW 67

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
           +                         D+ +E+N +D  G +  V+   + E      +  
Sbjct: 68  R-------------------------DNFIEMNASDERGID--VVRHKIKEFARTAPI-- 98

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRYA-GCNKIIFXXXXXXNLESVEHLCKVVRL 545
             A  K+I + +AD L++D Q  +   +  Y+  C  I+        +E ++  C V R 
Sbjct: 99  GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158

Query: 546 KP 551
           KP
Sbjct: 159 KP 160

>RFCS_METMP (Q6M044) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 315

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 1/189 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L E + +  +   L   V ++   H +F G+  VGK +  LAL +D +G D  
Sbjct: 7   EKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-DTW 65

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
           +                         ++ +E+N +D  G +  VI T + +      +  
Sbjct: 66  R-------------------------ENFLELNSSDERGID--VIRTKVKDFARTKPI-- 96

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRYAG-CNKIIFXXXXXXNLESVEHLCKVVRL 545
             A  KVI + ++D L+SD Q+ +   + +Y+  C  I+        +  ++  C + R 
Sbjct: 97  GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRF 156

Query: 546 KPPSFDEII 572
            P   ++++
Sbjct: 157 SPLKTEDLV 165

>RFCS_SULTO (Q975D3) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 327

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
 Frame = +3

Query: 6   ADRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDN 185
           A++YRP  L + +  K + + L R V ++   H +F G    GK +  LAL+ D +G DN
Sbjct: 10  AEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG-DN 68

Query: 186 LKMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLI 365
            +       +EL     + IDV               +    K    T+   ++P     
Sbjct: 69  YRQ----YFLELNASDERGIDV---------------IRNKVKEFARTVAGGNVP----- 104

Query: 366 CDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVR 542
                 KV+++ +AD +++D Q  +   +  Y    + I         +E ++    + R
Sbjct: 105 -----FKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFR 159

Query: 543 LKPPSFDEII 572
             P   ++++
Sbjct: 160 FYPLKKEDVV 169

>RFC2_YEAST (P40348) Activator 1 41 kDa subunit (Replication factor C subunit|
           2) (Replication factor C2)
          Length = 353

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 2/158 (1%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L E          L + +      H +F G    GK S +LAL ++ +GPD +
Sbjct: 29  EKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM 88

Query: 189 KMEEITKRIELKGEIAKHID-VKVKISDH-HVEVNLADLHGYEKYVITTLLNESIPPPDL 362
           K    ++ +EL     + I  V+ K+ +   + V+    H  E Y          PP   
Sbjct: 89  K----SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENY--------PCPP--- 133

Query: 363 ICDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNK 476
                  K+I++ +AD +++D Q  +   +  Y+G  +
Sbjct: 134 ------YKIIILDEADSMTADAQSALRRTMETYSGVTR 165

>RFC2_SCHPO (Q09843) Probable activator 1 subunit 2 (Replication factor C|
           subunit 2) (Replication factor C2)
          Length = 340

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 4/183 (2%)
 Frame = +3

Query: 15  YRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNLKM 194
           YRP  L +    ++    L + +      H +F G+   GK S +LAL R+ FGP  +K 
Sbjct: 25  YRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMK- 83

Query: 195 EEITKRIELKGEIAKHIDV---KVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLI 365
              ++ +EL     + I +   KVK               + K  +T  ++    PP   
Sbjct: 84  ---SRVLELNASDERGISIIREKVK--------------SFAKTTVTNKVDGYPCPP--- 123

Query: 366 CDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKI-IFXXXXXXNLESVEHLCKVVR 542
                 K+I++ +AD ++ D Q  +   +  YA   +  +        ++ +   C   R
Sbjct: 124 -----FKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178

Query: 543 LKP 551
            KP
Sbjct: 179 FKP 181

>RFCS_NATPD (Q3ITJ2) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 325

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 1/182 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L + + ++++ + L + + +    H +F G   VGK +   A+ ++ +G D  
Sbjct: 16  EKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDWR 75

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
           +       +EL     + IDV   + D       A   GY                    
Sbjct: 76  E-----NFLELNASDQRGIDV---VRDRIKSFARASFGGY-------------------- 107

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVRL 545
           DH   ++I + +AD L+SD Q  +   + +++   + I         ++ ++  C V R 
Sbjct: 108 DH---RIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRF 164

Query: 546 KP 551
            P
Sbjct: 165 SP 166

>RFC4_YEAST (P40339) Activator 1 37 kDa subunit (Replication factor C subunit|
           4) (Replication factor C4)
          Length = 323

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 1/189 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP VL + + NK   D L ++  +    H I  G   +GK + V  L  +  G    
Sbjct: 13  EKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG---- 68

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
                   +EL     + IDV      H  +  L                  +PP     
Sbjct: 69  -RSYADGVLELNASDDRGIDVVRNQIKHFAQKKL-----------------HLPP----- 105

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVRL 545
                K++++ +AD +++  Q  +   +  Y+   +  F        +E ++  C ++R 
Sbjct: 106 --GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRY 163

Query: 546 KPPSFDEII 572
              S ++++
Sbjct: 164 SKLSDEDVL 172

>RFCS_METMA (Q8PVY4) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 338

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 1/181 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L +    +   + L   V  +   H +F G   VGK +  +++ R+ FG D  
Sbjct: 17  EKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLW 76

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
           +                         ++  E+N +D  G +  V   + N +   P    
Sbjct: 77  R-------------------------ENFTELNASDERGID-IVRNKIKNFAKTAP---M 107

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRY-AGCNKIIFXXXXXXNLESVEHLCKVVRL 545
             A  K+I + +AD L+SD Q  +   + ++ + C  I+        +E ++  C V R 
Sbjct: 108 GGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRF 167

Query: 546 K 548
           +
Sbjct: 168 R 168

>RFCS_METAC (Q8TSX5) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 338

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 1/188 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L +        + L   V  +   H +F G   VGK +  +++ R+ FG D  
Sbjct: 17  EKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLW 76

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
           +                         ++  E+N +D  G +  V   + N +   P    
Sbjct: 77  R-------------------------ENFTELNASDERGID-IVRNKIKNFAKTAP---I 107

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRY-AGCNKIIFXXXXXXNLESVEHLCKVVRL 545
             A  K+I + +AD L++D Q  +   + R+ + C  I+        +E ++  C V R 
Sbjct: 108 GGAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRF 167

Query: 546 KPPSFDEI 569
           +  S + I
Sbjct: 168 RRLSDEAI 175

>RFCS_METTH (O26343) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) (mthRFC small subunit)
          Length = 321

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 1/189 (0%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L + +  + +   L R V E+   + +F G   VGK +  LAL R        
Sbjct: 10  EKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAR-------- 61

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDLIC 368
                    E+ GE  +          + +E+N +D  G +  V T++ N     P    
Sbjct: 62  ---------EILGEYWR---------QNFLELNASDARGIDT-VRTSIKNFCRLKP---- 98

Query: 369 DHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVVRL 545
             A  ++I + + D ++ D QH +   +  Y   +  I         ++ ++  C + R 
Sbjct: 99  VGAPFRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRF 158

Query: 546 KPPSFDEII 572
            P    +II
Sbjct: 159 LPLKGHQII 167

>RFCS_HALMA (Q5UZE5) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 325

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 3/190 (1%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L + + ++ +   L   V+    +H +F G    GK +   A+ R+ +G D  
Sbjct: 18  EKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD-- 75

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYE--KYVITTLLNESIPPPDL 362
                                     +H +E+N +D  G +  +  I      S      
Sbjct: 76  ------------------------WREHFLELNASDERGIDVVRDRIKNFARTSF----- 106

Query: 363 ICDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVV 539
                  ++I + +AD L+SD Q  +   + +++   + I         ++ ++  C V 
Sbjct: 107 --GGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVF 164

Query: 540 RLKPPSFDEI 569
           R  P + D +
Sbjct: 165 RFSPLADDAV 174

>RFC3_ARXAD (O74111) Activator 1 subunit 3 (Replication factor C subunit 3)|
           (Replication factor C3)
          Length = 338

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP+ L E   ++ V   + + V E +  H +F G    GK + ++A+ R  +G +  
Sbjct: 21  EKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYR 80

Query: 189 KMEEITKRIELKGEIAKHIDV 251
            M      +EL     + IDV
Sbjct: 81  NM-----ILELNASDERGIDV 96

>RFC4_SCHPO (O94449) Probable activator 1 subunit 4 (Replication factor C|
           subunit 4) (Replication factor C4)
          Length = 342

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGP 179
           ++YRP VL + + N+   D L  +  E    H +  G   +GK + +L L     GP
Sbjct: 25  EKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81

>RFCS_PICTO (Q6L1I0) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 318

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 3/184 (1%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPDNL 188
           ++YRP  L + I      + L   V      H IF G    GK S  +AL  + FG D  
Sbjct: 7   EKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD-- 64

Query: 189 KMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNE--SIPPPDL 362
                                     ++ +E+N +D  G +  +I   + +   I P + 
Sbjct: 65  ------------------------WKENFLELNASDERGID--IIRNNIKDFAKIRPSNK 98

Query: 363 ICDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFXXXXXXN-LESVEHLCKVV 539
           +      K+I + +AD+L+++ Q  +   +  +    + IF        +  ++  C V+
Sbjct: 99  L----GFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVL 154

Query: 540 RLKP 551
           R +P
Sbjct: 155 RFRP 158

>FTSK_CHLTE (Q8KBK0) DNA translocase ftsK|
          Length = 804

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 21  PSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAF---GPDNLK 191
           P VLG+ I N+ + D+L  M       H +  GA   GK   +  LL        PD +K
Sbjct: 445 PIVLGKSISNEVIVDDLAAM------PHLLIAGATGAGKSVAINVLLTSLLYSKKPDEVK 498

Query: 192 MEEI-TKRIELK 224
              I  KR+ELK
Sbjct: 499 FVLIDPKRVELK 510

>RFCS_METJA (Q58817) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) [Contains: Mja RFC-1
           intein; Mja RFC-2 intein; Mja RFC-3 intein]
          Length = 1847

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 9   DRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGK 137
           ++YRP  L + +    +   L + V ++   H +F G   VGK
Sbjct: 11  EKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGK 53

>RFCL_METMA (Q8Q084) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 610

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 6   ADRYRPSVLGEFICNKAVADELHRMVTERQC-----NHFIFEGAQAVGKRSMVLALLRD 167
           A++YRP  LG+ + N+    +L +   E Q         I  G   +GK S   AL  D
Sbjct: 13  AEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGD 71

>ME31_DROME (P23128) Putative ATP-dependent RNA helicase me31b (EC 3.6.1.-)|
           (Maternal expression at 31B)
          Length = 459

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 228 EIAKHIDVKVKISDHHVEVNLADLHGYEKY--VITTLLNESIPPPDLICDHANCKVIVVH 401
           E+AKH+D++V ++     +    L  Y+K   +I T           + D ++C+++V+ 
Sbjct: 148 ELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLD 207

Query: 402 DADRLSS 422
           +AD+L S
Sbjct: 208 EADKLLS 214

>HS101_ORYSA (Q6F2Y7) Heat shock protein 101|
          Length = 912

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = +3

Query: 6   ADRYRPSVLGEFICNKAVADELHRMVT-----ERQCNHFIFEGAQAVGKRSMVLALLRDA 170
           ADR    V+G+     AVA+ + R        ++    F+F G   VGK  +  AL    
Sbjct: 565 ADRLHQRVVGQAEAVSAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQL 624

Query: 171 FGPDNLKMEEITKRIELKGEIAKH 242
           F  +NL +     RI++   + +H
Sbjct: 625 FDDENLLV-----RIDMSEYMEQH 643

>SYL_THEMA (Q9WY15) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 824

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +3

Query: 102 HFIFEGAQAVGKRSMVLALLRDAFGPDNLKMEEITKRIELKGEIAKHIDVKVKISDHHVE 281
           H   E    +G  S+V+     ++ P  L++EE+   I++ G++   + V V IS+  ++
Sbjct: 732 HLAEEFWHDLGNDSLVVQQSWPSYDPKALEVEEVEIAIQINGKVRDKVVVPVDISEEDLK 791

Query: 282 VNLADLHGYEKYV 320
             + +    ++YV
Sbjct: 792 RIVLERERVKEYV 804

>TRPB2_PYRFU (Q8U0J5) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 446

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = +3

Query: 201 ITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDL 362
           I K IE K E  K I +   +S H     L DLHGYE+Y+   L  +   P DL
Sbjct: 390 IDKAIEAKRE-GKEIVILFNLSGH----GLLDLHGYEEYLEGRL--QDYEPKDL 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,245,351
Number of Sequences: 219361
Number of extensions: 1690298
Number of successful extensions: 4562
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4558
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)