ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15f24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPR89_BOVIN (Q5BIM9) Protein GPR89A 29 8.9
2GPR89_MOUSE (Q8BS95) Protein GPR89A 29 8.9
3GPR89_HUMAN (Q9Y302) Protein GPR89A (Putative MAPK-activating pr... 29 8.9

>GPR89_BOVIN (Q5BIM9) Protein GPR89A|
          Length = 423

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 414 ISVLPFTISIYMVSSLILRRLWLSFTFNCLLYSLFIGYFWT--RHFPVILNKCG 569
           + ++PF I  ++VS++ L        F+CLL+  F+ +FW     FP++  K G
Sbjct: 87  VFMVPFYIGYFIVSNIRLLHKQ-RLLFSCLLWLTFMYFFWKLGDPFPILSPKHG 139



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>GPR89_MOUSE (Q8BS95) Protein GPR89A|
          Length = 455

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 414 ISVLPFTISIYMVSSLILRRLWLSFTFNCLLYSLFIGYFWT--RHFPVILNKCG 569
           + ++PF I  ++VS++ L        F+CLL+  F+ +FW     FP++  K G
Sbjct: 87  VFMVPFYIGYFIVSNIQLLHKQ-RLLFSCLLWLTFMYFFWKLGDPFPILSPKHG 139



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>GPR89_HUMAN (Q9Y302) Protein GPR89A (Putative MAPK-activating protein PM01)|
           (Putative NF-kappa-B-activating protein 90)
          Length = 455

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 414 ISVLPFTISIYMVSSLILRRLWLSFTFNCLLYSLFIGYFWT--RHFPVILNKCG 569
           + ++PF I  ++VS++ L        F+CLL+  F+ +FW     FP++  K G
Sbjct: 87  VFMVPFYIGYFIVSNIRLLHKQ-RLLFSCLLWLTFMYFFWKLGDPFPILSPKHG 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,102,172
Number of Sequences: 219361
Number of extensions: 1095642
Number of successful extensions: 2983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2983
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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