| Clone Name | bags15f20 |
|---|---|
| Clone Library Name | barley_pub |
>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)| (ATP-dependent helicase UPF1) Length = 1254 Score = 166 bits (421), Expect = 4e-41 Identities = 83/157 (52%), Positives = 107/157 (68%), Gaps = 1/157 (0%) Frame = +3 Query: 18 GGLMSQSGLMTQMPVQGLSQTFRDGFTVGGMSQDLFGDDFKSQGSHVAYNIADFSTQASQ 197 GG +SQ G SQ FRDGF++GG+SQD DD KSQGSH YN+ADF+TQAS Sbjct: 1081 GGPLSQPGYG--------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASP 1132 Query: 198 GGYAVEY-TQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP 374 GG+AV+Y TQG +PGN++NQ++ GY ND +SQ++MAHG +FTQAG+ D Sbjct: 1133 GGFAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGINDFMSQEYMAHGGQGLFTQAGFIDS 1192 Query: 375 SQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485 SQD+ Q YG+ P +LQSQ + N +YSQ +AHYNT Sbjct: 1193 SQDDGQQNPYGVNNP-NLQSQGLPNSLYSQPFAHYNT 1228
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 37.0 bits (84), Expect = 0.048 Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Frame = +3 Query: 39 GLMTQMPVQGLSQTFRDGF---TVGGMSQ--DLFGDDFKSQGSHVAYNIADFSTQASQGG 203 G P QG SQ + + GG Q D G S +STQ++ G Sbjct: 15 GAYPTQPGQGYSQQSNQPYGQQSYGGYGQSTDTSGYGQSSYSGSYGQTQNSYSTQSAPQG 74 Query: 204 YAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP-SQ 380 Y G +Y QS++PGY A S ++GS S +GY P Sbjct: 75 YGSAGGYGSSQSSQSSYGQQSSYPGYGQQPAP----SSTSGSYGSSSQ--SSGYGQPQGG 128 Query: 381 DESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485 Q YG + Q QS P + YN+ Sbjct: 129 GYGQQSGYGGQQQSYGQQQSYNPPQGYGQQSQYNS 163
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 35.8 bits (81), Expect = 0.11 Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 6/155 (3%) Frame = +3 Query: 39 GLMTQMPVQGLSQTFRDGF---TVGGMSQ--DLFGDDFKSQGSHVAYNIADFSTQASQGG 203 G P QG SQ + + G SQ D G S S+ + TQ++ G Sbjct: 15 GAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQG 74 Query: 204 YAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP-SQ 380 Y G +Y QS++PGY A S ++GS S + Y P S Sbjct: 75 YGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAP----SSTSGSYGSSSQ--SSSYGQPQSG 128 Query: 381 DESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485 S Q YG + Q QS P YN+ Sbjct: 129 SYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNS 163
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 35.4 bits (80), Expect = 0.14 Identities = 42/155 (27%), Positives = 55/155 (35%), Gaps = 7/155 (4%) Frame = +3 Query: 39 GLMTQMPVQGLSQTF-----RDGFTVGGMSQDLFGDDFKSQGSHVAYNI-ADFSTQASQG 200 G P QG SQ + ++ G S D G S GS + TQ++ Sbjct: 15 GAYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSSYGSSYGQTQNTGYGTQSAPQ 74 Query: 201 GYAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP-S 377 GY G +Y QS++PGY A S ++G S + Y P S Sbjct: 75 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAP----SSTSGSYGGSSQ--SSSYGQPQS 128 Query: 378 QDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYN 482 Q YG + Q QS NP Q Y N Sbjct: 129 GGYGQQSGYGGQQQSYGQQQSSYNP--PQGYGQQN 161
>AREA_ASPNG (O13412) Nitrogen regulatory protein areA| Length = 882 Score = 35.4 bits (80), Expect = 0.14 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Frame = +3 Query: 231 QSGYPGNYLNQSAHPGYP-----HIGATNDIVSQDHMAHGSH-SMFTQAGYNDPSQDESS 392 QS + GN+ + PGYP H+ T + D SH +MF+ +D D+ + Sbjct: 464 QSHHTGNHSSSMHSPGYPIPQPQHVDPTQVLNPNDFSTGASHAAMFSFGADSDNEDDDGN 523 Query: 393 QM--HYGMAAPGHLQSQSMMN 449 Q G+ PG L + MN Sbjct: 524 QFSDRAGLTMPGDLDDGADMN 544
>ERF2_KLULA (Q9HGI8) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 700 Score = 33.1 bits (74), Expect = 0.70 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Frame = +3 Query: 186 QASQGGYAVEYTQGPQSGYPGNYLNQSAHPGY-PHIGATNDIVSQDHMAHGSHSMFTQAG 362 Q G Y Q Q G Y NQ + GY GA Q + A+G G Sbjct: 5 QNQDQGQGQGYNQYNQYGQYNQYYNQQGYQGYNGQQGAPQGY--QAYQAYGQQPQGAYQG 62 Query: 363 YNDPSQDESSQMHYGMAA--PGHLQSQSMMNPMYSQSYAHYNT 485 YN P Q + Q + G A G+ Q N Y+++Y + N+ Sbjct: 63 YN-PQQAQGYQPYQGYNAQQQGYNAQQGGHNNNYNKNYNNKNS 104 Score = 30.8 bits (68), Expect = 3.5 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Frame = +3 Query: 159 AYNIADFSTQASQGGYAVEYTQG--PQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAH 332 AY Q + GY + QG P GY +A G N+ ++++ Sbjct: 48 AYQAYGQQPQGAYQGYNPQQAQGYQPYQGYNAQQQGYNAQQG-----GHNNNYNKNYNNK 102 Query: 333 GSHSMFTQAGYNDPSQDESSQMHYGMAAPGHLQSQSM 443 S++ + + GY +Q ++Q G AAP SQ M Sbjct: 103 NSYNNYNKQGYQG-AQGYNAQQPTGYAAPAQSSSQGM 138
>YAC5_SCHPO (Q09819) Hypothetical protein C16C9.05 in chromosome I| Length = 404 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = +3 Query: 222 QGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQD-HMAHGSHSMFTQAGYNDPSQDESS-Q 395 +GP S + N L S H H+ +SQD M S +A Y++ S +++ Q Sbjct: 28 EGPPSNFKNNSLTSSTHSSTDHVNVLP--ISQDKEMDISSPVKKQKASYSNKSPNKAPIQ 85 Query: 396 MHYGMAAPGHLQSQSMMNPM 455 G + HL+++S P+ Sbjct: 86 KSRGSSLKSHLETESQQTPV 105
>ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 701 Score = 32.0 bits (71), Expect = 1.6 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Frame = +3 Query: 69 LSQTFRDGFTVGGMSQDLFGDDFKSQGSHVAYNIAD---FSTQASQGGYAVEYTQGPQSG 239 LSQ F++ G Q ++ Q +N F+ QGGY Y Q G Sbjct: 12 LSQDFQNTSIGSGEQQQQSYQQYQQQPQQNNFNANSAPTFTPSGQQGGYQGGY----QGG 67 Query: 240 YPGNYLNQSAHPGYPHIGATNDIVSQDHMAH------GSHSMFTQAGYND----PSQDES 389 Y G Y N S GY + +Q + + G ++ + GYN+ QD+ Sbjct: 68 YQGGYQNYS-QGGYQNYNQGYQNYNQGYQGYQNNNRGGYNNYNNRGGYNNYNNYNQQDQQ 126 Query: 390 SQMHYGMAAPGHLQSQS 440 + GM+ + Q+ Sbjct: 127 PVQNQGMSLADFQKQQN 143
>AHR_RAT (P41738) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 853 Score = 31.2 bits (69), Expect = 2.6 Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 27/118 (22%) Frame = +3 Query: 213 EYTQGPQSGYPGNYLNQSAHPGYPH-----------------IGATNDIVSQDHMAHGSH 341 E+++G Q +PG +S HP + I + + +VS G+ Sbjct: 717 EHSKGTQLDFPGRDFERSLHPNASNLEDFVSCLQVPENQRHGINSQSAMVSPQAYYAGAM 776 Query: 342 SMF-TQAGYNDPSQDESSQMHYGMAAPG------HLQSQSMMNPMYS---QSYAHYNT 485 SM+ QAG P QM Y PG QS S++N YS S H T Sbjct: 777 SMYQCQAG---PQHTPVDQMQYSPEIPGSQAFLSKFQSPSILNEAYSADLSSIGHLQT 831
>MRP6_HUMAN (O95255) Multidrug resistance-associated protein 6 (ATP-binding| cassette sub-family C member 6) (Anthracycline resistance-associated protein) (Multi-specific organic anion transporter-E) (MOAT-E) Length = 1503 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +2 Query: 23 PDVPIWTDDTDACPRS*SNIP*WVYRWWDVSGLIWR*FQEPRIPRGI 163 P P ++ CP + + P WW VSGL+WR ++ P P+ + Sbjct: 191 PFFPEDPQQSNPCPETGAAFPSKATFWW-VSGLVWRGYRRPLRPKDL 236
>TENS1_BOVIN (Q9GLM4) Tensin-1| Length = 1715 Score = 31.2 bits (69), Expect = 2.6 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 17/125 (13%) Frame = +3 Query: 117 DLFGDDFKSQGSHVAYNIADFS-----TQASQGGY---AVEYTQGPQSGYPGNYLNQSAH 272 D+ D+ +Q H ++ S T S+GGY T G YP + Sbjct: 499 DILDDELPNQDGHSVGSMGTLSSLDGVTNTSEGGYPEALSPLTNGLDKPYPMEPMVNGG- 557 Query: 273 PGYPHIGATNDIVSQ-DHMAHGSHSMFTQ---AGYN----DPSQDES-SQMHYGMAAPGH 425 GYP+ A+ + +Q H A S TQ AGY P+ +S + HYG G Sbjct: 558 -GYPYESASRAVSAQAGHTAPMRPSYSTQEGLAGYQREGPHPAWPQSATTSHYGHDPNGM 616 Query: 426 LQSQS 440 +SQS Sbjct: 617 FRSQS 621
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 30.8 bits (68), Expect = 3.5 Identities = 43/163 (26%), Positives = 51/163 (31%), Gaps = 18/163 (11%) Frame = +3 Query: 51 QMPVQGLSQTFRDGFTVGGMSQDLFGDDFKSQGSHVAYNIADFSTQASQGGYAVEYTQGP 230 Q PVQG Q G G Q + + G S Q QG Y Q P Sbjct: 216 QQPVQG--QQPEQGQQPGQWQQGYYPTSPQQLGQGQQPRQWQQSGQGQQGHYPTSLQQ-P 272 Query: 231 QSGYPGNYLNQSAHPG------YP------------HIGATNDIVSQDHMAHGSHSMFTQ 356 G G+YL PG YP H A+ Q H S + Sbjct: 273 GQGQQGHYLASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQ-QE 331 Query: 357 AGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485 G Q +SQ G GH + S+ P Q HY T Sbjct: 332 PGQGQQGQIPASQQQPGQGQQGHYPA-SLQQPGQGQQ-GHYPT 372
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 30.8 bits (68), Expect = 3.5 Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Frame = +3 Query: 186 QASQGGYAVEYTQ-GPQSGYPG--NYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQ 356 Q S G Y + Q GPQ GYP NY N + YP G MA G + M Sbjct: 790 QNSMGSYGPQGGQYGPQGGYPRQPNY-NALPNANYPSAG----------MAGGINPM--- 835 Query: 357 AGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAH 476 G + YG PG + SM N Y + A+ Sbjct: 836 -GAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMAN 874
>ERF2_CANMA (Q9HGI7) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 712 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 2/87 (2%) Frame = +3 Query: 186 QASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGY 365 Q GGY YTQ GY NY N+ GY Q++ G + Q Y Sbjct: 59 QQQYGGYQQNYTQYQAGGYQQNYNNRG---GYQQNYNNRGGYQQNYNNRGGYQQQQQQQY 115 Query: 366 N--DPSQDESSQMHYGMAAPGHLQSQS 440 +P+Q Y Q+QS Sbjct: 116 QAYNPNQQYGGYQAYNPQQQQQQQTQS 142
>ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1| Length = 4167 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +3 Query: 294 ATNDIVSQDHMAHGSHSMFTQAGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYA 473 AT ++S H G S+F Q G D E + AAPG + M+ + S SY+ Sbjct: 565 ATPTVLSSSHSHRGKPSIFYQQGLPDSHLTEEALKV--SAAPGLADQTTGMSTLTSTSYS 622 Query: 474 H 476 H Sbjct: 623 H 623
>TIN_DROME (P22711) Muscle-specific homeobox protein tinman (Msh-2) (NK-4)| Length = 416 Score = 30.0 bits (66), Expect = 5.9 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 11/89 (12%) Frame = +3 Query: 186 QASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYP-HIGATNDIVSQDHMAHGSH------- 341 QA GGY YTQ P PG+ N A P + ++V+Q GS+ Sbjct: 8 QAQSGGYYDHYTQSPS---PGSLTNADALNTTPFSVKDILNMVNQTEAYEGSYGHIDGAA 64 Query: 342 ---SMFTQAGYNDPSQDESSQMHYGMAAP 419 ++F Y +P Q + Q H P Sbjct: 65 TASALFAAGEYQNPHQYLNHQQHQQSELP 93
>CO005_HUMAN (Q9H2U6) Protein C15orf5| Length = 94 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +2 Query: 233 IWISWELFEPKCTSRVPPYRCNK*HCISGSHGPW 334 IW+ WE E K R PP + + C G+ W Sbjct: 30 IWMEWEDLEAKTLDRRPPEQTRRERCSCGNGKRW 63
>SSXT_MOUSE (Q62280) SSXT protein (SYT protein) (Synovial sarcoma-associated| Ss18-alpha) Length = 418 Score = 29.6 bits (65), Expect = 7.7 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Frame = +3 Query: 222 QGPQSGYPGN---YLNQSAHPGY-PHIGATNDIVSQDHMAHG-SHSMFTQAGYNDPSQDE 386 QGP Y G Y +Q +H G P G H +G + + GY+ P +D Sbjct: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317 Query: 387 SSQMHYGMAAPGHLQSQSMMNPMYSQSY 470 S + G + Q + P Q Y Sbjct: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGY 345
>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X| chromosome) (SYT protein) Length = 418 Score = 29.6 bits (65), Expect = 7.7 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Frame = +3 Query: 222 QGPQSGYPGN---YLNQSAHPGY-PHIGATNDIVSQDHMAHG-SHSMFTQAGYNDPSQDE 386 QGP Y G Y +Q +H G P G H +G + + GY+ P +D Sbjct: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317 Query: 387 SSQMHYGMAAPGHLQSQSMMNPMYSQSY 470 S + G + Q + P Q Y Sbjct: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGY 345
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 29.6 bits (65), Expect = 7.7 Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 9/118 (7%) Frame = +3 Query: 159 AYNIADFSTQASQGGYAVEYTQGPQSGYPGNYLNQSA--HPGYPHIGATNDIVSQDHMAH 332 AY+ + +Q YA + G Q YP Y Q A P P G SQ + Sbjct: 97 AYDTTTATVTTTQASYAAQSAYGTQPAYPA-YGQQPAATAPTRPQDGNKPTETSQPQSST 155 Query: 333 GSHSM----FTQAGYNDPSQDESSQMHYGMAAPGH--LQSQSMMNPMYSQ-SYAHYNT 485 G ++ + Q+ Y+ P S M A P + S Y Q SY+ NT Sbjct: 156 GGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNT 213
>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)| (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24 (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein VP22A; C-terminal peptide] Length = 605 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Frame = +3 Query: 189 ASQGGYAVE---YTQGPQSGYPGNYLNQSAHPGYPH 287 A GGY Y GP G PG +L AH +PH Sbjct: 337 APAGGYFTSPGGYYAGPAGGDPGAFLAMDAHTYHPH 372 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,702,142 Number of Sequences: 219361 Number of extensions: 2294871 Number of successful extensions: 5458 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5443 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)