ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog... 166 4e-41
2FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein) 37 0.048
3FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog... 36 0.11
4FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein) 35 0.14
5AREA_ASPNG (O13412) Nitrogen regulatory protein areA 35 0.14
6ERF2_KLULA (Q9HGI8) Eukaryotic peptide chain release factor GTP-... 33 0.70
7YAC5_SCHPO (Q09819) Hypothetical protein C16C9.05 in chromosome I 32 1.2
8ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-... 32 1.6
9AHR_RAT (P41738) Aryl hydrocarbon receptor precursor (Ah recepto... 31 2.6
10MRP6_HUMAN (O95255) Multidrug resistance-associated protein 6 (A... 31 2.6
11TENS1_BOVIN (Q9GLM4) Tensin-1 31 2.6
12GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10... 31 3.5
13ARI1A_HUMAN (O14497) AT-rich interactive domain-containing prote... 31 3.5
14ERF2_CANMA (Q9HGI7) Eukaryotic peptide chain release factor GTP-... 31 3.5
15ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1 31 3.5
16TIN_DROME (P22711) Muscle-specific homeobox protein tinman (Msh-... 30 5.9
17CO005_HUMAN (Q9H2U6) Protein C15orf5 30 7.7
18SSXT_MOUSE (Q62280) SSXT protein (SYT protein) (Synovial sarcoma... 30 7.7
19SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated... 30 7.7
20EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing... 30 7.7
21VP40_EBV (P03234) Capsid protein P40 (Virion structural protein ... 30 7.7

>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
            (ATP-dependent helicase UPF1)
          Length = 1254

 Score =  166 bits (421), Expect = 4e-41
 Identities = 83/157 (52%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
 Frame = +3

Query: 18   GGLMSQSGLMTQMPVQGLSQTFRDGFTVGGMSQDLFGDDFKSQGSHVAYNIADFSTQASQ 197
            GG +SQ G          SQ FRDGF++GG+SQD   DD KSQGSH  YN+ADF+TQAS 
Sbjct: 1081 GGPLSQPGYG--------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASP 1132

Query: 198  GGYAVEY-TQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP 374
            GG+AV+Y TQG    +PGN++NQ++  GY      ND +SQ++MAHG   +FTQAG+ D 
Sbjct: 1133 GGFAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGINDFMSQEYMAHGGQGLFTQAGFIDS 1192

Query: 375  SQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485
            SQD+  Q  YG+  P +LQSQ + N +YSQ +AHYNT
Sbjct: 1193 SQDDGQQNPYGVNNP-NLQSQGLPNSLYSQPFAHYNT 1228



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>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 37.0 bits (84), Expect = 0.048
 Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 6/155 (3%)
 Frame = +3

Query: 39  GLMTQMPVQGLSQTFRDGF---TVGGMSQ--DLFGDDFKSQGSHVAYNIADFSTQASQGG 203
           G     P QG SQ     +   + GG  Q  D  G    S           +STQ++  G
Sbjct: 15  GAYPTQPGQGYSQQSNQPYGQQSYGGYGQSTDTSGYGQSSYSGSYGQTQNSYSTQSAPQG 74

Query: 204 YAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP-SQ 380
           Y      G       +Y  QS++PGY    A     S    ++GS S    +GY  P   
Sbjct: 75  YGSAGGYGSSQSSQSSYGQQSSYPGYGQQPAP----SSTSGSYGSSSQ--SSGYGQPQGG 128

Query: 381 DESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485
               Q  YG     + Q QS   P      + YN+
Sbjct: 129 GYGQQSGYGGQQQSYGQQQSYNPPQGYGQQSQYNS 163



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>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 6/155 (3%)
 Frame = +3

Query: 39  GLMTQMPVQGLSQTFRDGF---TVGGMSQ--DLFGDDFKSQGSHVAYNIADFSTQASQGG 203
           G     P QG SQ     +   +  G SQ  D  G    S  S+       + TQ++  G
Sbjct: 15  GAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQG 74

Query: 204 YAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP-SQ 380
           Y      G       +Y  QS++PGY    A     S    ++GS S    + Y  P S 
Sbjct: 75  YGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAP----SSTSGSYGSSSQ--SSSYGQPQSG 128

Query: 381 DESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485
             S Q  YG     + Q QS   P        YN+
Sbjct: 129 SYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNS 163



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>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 42/155 (27%), Positives = 55/155 (35%), Gaps = 7/155 (4%)
 Frame = +3

Query: 39  GLMTQMPVQGLSQTF-----RDGFTVGGMSQDLFGDDFKSQGSHVAYNI-ADFSTQASQG 200
           G     P QG SQ       +  ++  G S D  G    S GS         + TQ++  
Sbjct: 15  GAYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSSYGSSYGQTQNTGYGTQSAPQ 74

Query: 201 GYAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGYNDP-S 377
           GY      G       +Y  QS++PGY    A     S    ++G  S    + Y  P S
Sbjct: 75  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAP----SSTSGSYGGSSQ--SSSYGQPQS 128

Query: 378 QDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYN 482
                Q  YG     + Q QS  NP   Q Y   N
Sbjct: 129 GGYGQQSGYGGQQQSYGQQQSSYNP--PQGYGQQN 161



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>AREA_ASPNG (O13412) Nitrogen regulatory protein areA|
          Length = 882

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
 Frame = +3

Query: 231 QSGYPGNYLNQSAHPGYP-----HIGATNDIVSQDHMAHGSH-SMFTQAGYNDPSQDESS 392
           QS + GN+ +    PGYP     H+  T  +   D     SH +MF+    +D   D+ +
Sbjct: 464 QSHHTGNHSSSMHSPGYPIPQPQHVDPTQVLNPNDFSTGASHAAMFSFGADSDNEDDDGN 523

Query: 393 QM--HYGMAAPGHLQSQSMMN 449
           Q     G+  PG L   + MN
Sbjct: 524 QFSDRAGLTMPGDLDDGADMN 544



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>ERF2_KLULA (Q9HGI8) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 700

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
 Frame = +3

Query: 186 QASQGGYAVEYTQGPQSGYPGNYLNQSAHPGY-PHIGATNDIVSQDHMAHGSHSMFTQAG 362
           Q    G    Y Q  Q G    Y NQ  + GY    GA      Q + A+G        G
Sbjct: 5   QNQDQGQGQGYNQYNQYGQYNQYYNQQGYQGYNGQQGAPQGY--QAYQAYGQQPQGAYQG 62

Query: 363 YNDPSQDESSQMHYGMAA--PGHLQSQSMMNPMYSQSYAHYNT 485
           YN P Q +  Q + G  A   G+   Q   N  Y+++Y + N+
Sbjct: 63  YN-PQQAQGYQPYQGYNAQQQGYNAQQGGHNNNYNKNYNNKNS 104



 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +3

Query: 159 AYNIADFSTQASQGGYAVEYTQG--PQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAH 332
           AY       Q +  GY  +  QG  P  GY       +A  G       N+  ++++   
Sbjct: 48  AYQAYGQQPQGAYQGYNPQQAQGYQPYQGYNAQQQGYNAQQG-----GHNNNYNKNYNNK 102

Query: 333 GSHSMFTQAGYNDPSQDESSQMHYGMAAPGHLQSQSM 443
            S++ + + GY   +Q  ++Q   G AAP    SQ M
Sbjct: 103 NSYNNYNKQGYQG-AQGYNAQQPTGYAAPAQSSSQGM 138



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>YAC5_SCHPO (Q09819) Hypothetical protein C16C9.05 in chromosome I|
          Length = 404

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +3

Query: 222 QGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQD-HMAHGSHSMFTQAGYNDPSQDESS-Q 395
           +GP S +  N L  S H    H+      +SQD  M   S     +A Y++ S +++  Q
Sbjct: 28  EGPPSNFKNNSLTSSTHSSTDHVNVLP--ISQDKEMDISSPVKKQKASYSNKSPNKAPIQ 85

Query: 396 MHYGMAAPGHLQSQSMMNPM 455
              G +   HL+++S   P+
Sbjct: 86  KSRGSSLKSHLETESQQTPV 105



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>ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 701

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
 Frame = +3

Query: 69  LSQTFRDGFTVGGMSQDLFGDDFKSQGSHVAYNIAD---FSTQASQGGYAVEYTQGPQSG 239
           LSQ F++     G  Q      ++ Q     +N      F+    QGGY   Y    Q G
Sbjct: 12  LSQDFQNTSIGSGEQQQQSYQQYQQQPQQNNFNANSAPTFTPSGQQGGYQGGY----QGG 67

Query: 240 YPGNYLNQSAHPGYPHIGATNDIVSQDHMAH------GSHSMFTQAGYND----PSQDES 389
           Y G Y N S   GY +        +Q +  +      G ++   + GYN+      QD+ 
Sbjct: 68  YQGGYQNYS-QGGYQNYNQGYQNYNQGYQGYQNNNRGGYNNYNNRGGYNNYNNYNQQDQQ 126

Query: 390 SQMHYGMAAPGHLQSQS 440
              + GM+     + Q+
Sbjct: 127 PVQNQGMSLADFQKQQN 143



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>AHR_RAT (P41738) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)|
          Length = 853

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 27/118 (22%)
 Frame = +3

Query: 213  EYTQGPQSGYPGNYLNQSAHPGYPH-----------------IGATNDIVSQDHMAHGSH 341
            E+++G Q  +PG    +S HP   +                 I + + +VS      G+ 
Sbjct: 717  EHSKGTQLDFPGRDFERSLHPNASNLEDFVSCLQVPENQRHGINSQSAMVSPQAYYAGAM 776

Query: 342  SMF-TQAGYNDPSQDESSQMHYGMAAPG------HLQSQSMMNPMYS---QSYAHYNT 485
            SM+  QAG   P      QM Y    PG        QS S++N  YS    S  H  T
Sbjct: 777  SMYQCQAG---PQHTPVDQMQYSPEIPGSQAFLSKFQSPSILNEAYSADLSSIGHLQT 831



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>MRP6_HUMAN (O95255) Multidrug resistance-associated protein 6 (ATP-binding|
           cassette sub-family C member 6) (Anthracycline
           resistance-associated protein) (Multi-specific organic
           anion transporter-E) (MOAT-E)
          Length = 1503

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 23  PDVPIWTDDTDACPRS*SNIP*WVYRWWDVSGLIWR*FQEPRIPRGI 163
           P  P     ++ CP + +  P     WW VSGL+WR ++ P  P+ +
Sbjct: 191 PFFPEDPQQSNPCPETGAAFPSKATFWW-VSGLVWRGYRRPLRPKDL 236



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>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
 Frame = +3

Query: 117 DLFGDDFKSQGSHVAYNIADFS-----TQASQGGY---AVEYTQGPQSGYPGNYLNQSAH 272
           D+  D+  +Q  H   ++   S     T  S+GGY       T G    YP   +     
Sbjct: 499 DILDDELPNQDGHSVGSMGTLSSLDGVTNTSEGGYPEALSPLTNGLDKPYPMEPMVNGG- 557

Query: 273 PGYPHIGATNDIVSQ-DHMAHGSHSMFTQ---AGYN----DPSQDES-SQMHYGMAAPGH 425
            GYP+  A+  + +Q  H A    S  TQ   AGY      P+  +S +  HYG    G 
Sbjct: 558 -GYPYESASRAVSAQAGHTAPMRPSYSTQEGLAGYQREGPHPAWPQSATTSHYGHDPNGM 616

Query: 426 LQSQS 440
            +SQS
Sbjct: 617 FRSQS 621



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>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor|
          Length = 648

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 43/163 (26%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
 Frame = +3

Query: 51  QMPVQGLSQTFRDGFTVGGMSQDLFGDDFKSQGSHVAYNIADFSTQASQGGYAVEYTQGP 230
           Q PVQG  Q    G   G   Q  +    +  G          S Q  QG Y     Q P
Sbjct: 216 QQPVQG--QQPEQGQQPGQWQQGYYPTSPQQLGQGQQPRQWQQSGQGQQGHYPTSLQQ-P 272

Query: 231 QSGYPGNYLNQSAHPG------YP------------HIGATNDIVSQDHMAHGSHSMFTQ 356
             G  G+YL     PG      YP            H  A+     Q    H   S   +
Sbjct: 273 GQGQQGHYLASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQ-QE 331

Query: 357 AGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNT 485
            G     Q  +SQ   G    GH  + S+  P   Q   HY T
Sbjct: 332 PGQGQQGQIPASQQQPGQGQQGHYPA-SLQQPGQGQQ-GHYPT 372



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>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID|
            domain-containing protein 1A) (SWI/SNF-related,
            matrix-associated, actin-dependent regulator of chromatin
            subfamily F member 1) (SWI-SNF complex protein p270)
            (B120) (SWI-like pr
          Length = 2285

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
 Frame = +3

Query: 186  QASQGGYAVEYTQ-GPQSGYPG--NYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQ 356
            Q S G Y  +  Q GPQ GYP   NY N   +  YP  G          MA G + M   
Sbjct: 790  QNSMGSYGPQGGQYGPQGGYPRQPNY-NALPNANYPSAG----------MAGGINPM--- 835

Query: 357  AGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAH 476
             G       +     YG   PG +   SM N  Y  + A+
Sbjct: 836  -GAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMAN 874



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>ERF2_CANMA (Q9HGI7) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 712

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
 Frame = +3

Query: 186 QASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIVSQDHMAHGSHSMFTQAGY 365
           Q   GGY   YTQ    GY  NY N+    GY           Q++   G +    Q  Y
Sbjct: 59  QQQYGGYQQNYTQYQAGGYQQNYNNRG---GYQQNYNNRGGYQQNYNNRGGYQQQQQQQY 115

Query: 366 N--DPSQDESSQMHYGMAAPGHLQSQS 440
              +P+Q       Y        Q+QS
Sbjct: 116 QAYNPNQQYGGYQAYNPQQQQQQQTQS 142



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>ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1|
          Length = 4167

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 294 ATNDIVSQDHMAHGSHSMFTQAGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYA 473
           AT  ++S  H   G  S+F Q G  D    E +      AAPG     + M+ + S SY+
Sbjct: 565 ATPTVLSSSHSHRGKPSIFYQQGLPDSHLTEEALKV--SAAPGLADQTTGMSTLTSTSYS 622

Query: 474 H 476
           H
Sbjct: 623 H 623



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>TIN_DROME (P22711) Muscle-specific homeobox protein tinman (Msh-2) (NK-4)|
          Length = 416

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
 Frame = +3

Query: 186 QASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYP-HIGATNDIVSQDHMAHGSH------- 341
           QA  GGY   YTQ P    PG+  N  A    P  +    ++V+Q     GS+       
Sbjct: 8   QAQSGGYYDHYTQSPS---PGSLTNADALNTTPFSVKDILNMVNQTEAYEGSYGHIDGAA 64

Query: 342 ---SMFTQAGYNDPSQDESSQMHYGMAAP 419
              ++F    Y +P Q  + Q H     P
Sbjct: 65  TASALFAAGEYQNPHQYLNHQQHQQSELP 93



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>CO005_HUMAN (Q9H2U6) Protein C15orf5|
          Length = 94

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 233 IWISWELFEPKCTSRVPPYRCNK*HCISGSHGPW 334
           IW+ WE  E K   R PP +  +  C  G+   W
Sbjct: 30  IWMEWEDLEAKTLDRRPPEQTRRERCSCGNGKRW 63



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>SSXT_MOUSE (Q62280) SSXT protein (SYT protein) (Synovial sarcoma-associated|
           Ss18-alpha)
          Length = 418

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
 Frame = +3

Query: 222 QGPQSGYPGN---YLNQSAHPGY-PHIGATNDIVSQDHMAHG-SHSMFTQAGYNDPSQDE 386
           QGP   Y G    Y +Q +H G  P  G         H  +G     + + GY+ P +D 
Sbjct: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317

Query: 387 SSQMHYGMAAPGHLQSQSMMNPMYSQSY 470
           S   + G  +    Q  +   P   Q Y
Sbjct: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGY 345



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>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X|
           chromosome) (SYT protein)
          Length = 418

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
 Frame = +3

Query: 222 QGPQSGYPGN---YLNQSAHPGY-PHIGATNDIVSQDHMAHG-SHSMFTQAGYNDPSQDE 386
           QGP   Y G    Y +Q +H G  P  G         H  +G     + + GY+ P +D 
Sbjct: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317

Query: 387 SSQMHYGMAAPGHLQSQSMMNPMYSQSY 470
           S   + G  +    Q  +   P   Q Y
Sbjct: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGY 345



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>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma|
           breakpoint region 1 protein)
          Length = 656

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
 Frame = +3

Query: 159 AYNIADFSTQASQGGYAVEYTQGPQSGYPGNYLNQSA--HPGYPHIGATNDIVSQDHMAH 332
           AY+    +   +Q  YA +   G Q  YP  Y  Q A   P  P  G      SQ   + 
Sbjct: 97  AYDTTTATVTTTQASYAAQSAYGTQPAYPA-YGQQPAATAPTRPQDGNKPTETSQPQSST 155

Query: 333 GSHSM----FTQAGYNDPSQDESSQMHYGMAAPGH--LQSQSMMNPMYSQ-SYAHYNT 485
           G ++     + Q+ Y+ P    S  M    A P +      S     Y Q SY+  NT
Sbjct: 156 GGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNT 213



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>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +3

Query: 189 ASQGGYAVE---YTQGPQSGYPGNYLNQSAHPGYPH 287
           A  GGY      Y  GP  G PG +L   AH  +PH
Sbjct: 337 APAGGYFTSPGGYYAGPAGGDPGAFLAMDAHTYHPH 372


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,702,142
Number of Sequences: 219361
Number of extensions: 2294871
Number of successful extensions: 5458
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5443
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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