| Clone Name | bags15f20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105F12, full insert sequence Length = 2919 Score = 559 bits (282), Expect = e-156 Identities = 483/548 (88%), Gaps = 4/548 (0%) Strand = Plus / Plus Query: 27 atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86 |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1600 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 1659 Query: 87 gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1660 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 1719 Query: 147 ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206 ||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 1720 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 1779 Query: 207 gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266 | |||||| || | ||||| || |||||||||||||||||||||||||||||||||| | Sbjct: 1780 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 1839 Query: 267 gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326 ||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 1840 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 1899 Query: 327 gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386 ||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||||| Sbjct: 1900 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 1959 Query: 387 tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446 || || |||||||||| ||||||||||| |||||| ||||||||| ||| ||||||| Sbjct: 1960 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctcagcccatgatg 2016 Query: 447 aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506 || || | ||||||||||| || ||||| || ||||| ||||| |||||||| || ||| Sbjct: 2017 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 2076 Query: 507 cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565 ||||| |||||||||||||||||||| | | || ||||||||| ||||| |||||||| Sbjct: 2077 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 2136 Query: 566 gtttgatg 573 |||||||| Sbjct: 2137 gtttgatg 2144
>dbj|AK067729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F21, full insert sequence Length = 4032 Score = 559 bits (282), Expect = e-156 Identities = 483/548 (88%), Gaps = 4/548 (0%) Strand = Plus / Plus Query: 27 atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86 |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2884 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 2943 Query: 87 gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2944 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 3003 Query: 147 ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206 ||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 3004 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 3063 Query: 207 gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266 | |||||| || | ||||| || |||||||||||||||||||||||||||||||||| | Sbjct: 3064 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 3123 Query: 267 gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326 ||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 3124 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 3183 Query: 327 gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386 ||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||||| Sbjct: 3184 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 3243 Query: 387 tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446 || || |||||||||| ||||||||||| |||||| ||||||||| ||| ||||||| Sbjct: 3244 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctcagcccatgatg 3300 Query: 447 aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506 || || | ||||||||||| || ||||| || ||||| ||||| |||||||| || ||| Sbjct: 3301 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 3360 Query: 507 cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565 ||||| |||||||||||||||||||| | | || ||||||||| ||||| |||||||| Sbjct: 3361 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 3420 Query: 566 gtttgatg 573 |||||||| Sbjct: 3421 gtttgatg 3428
>dbj|AK065813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042O08, full insert sequence Length = 3678 Score = 559 bits (282), Expect = e-156 Identities = 483/548 (88%), Gaps = 4/548 (0%) Strand = Plus / Plus Query: 27 atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86 |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2361 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 2420 Query: 87 gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2421 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 2480 Query: 147 ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206 ||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 2481 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 2540 Query: 207 gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266 | |||||| || | ||||| || |||||||||||||||||||||||||||||||||| | Sbjct: 2541 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 2600 Query: 267 gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326 ||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 2601 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 2660 Query: 327 gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386 ||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||||| Sbjct: 2661 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 2720 Query: 387 tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446 || || |||||||||| ||||||||||| |||||| ||||||||| ||| ||||||| Sbjct: 2721 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctcagcccatgatg 2777 Query: 447 aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506 || || | ||||||||||| || ||||| || ||||| ||||| |||||||| || ||| Sbjct: 2778 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 2837 Query: 507 cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565 ||||| |||||||||||||||||||| | | || ||||||||| ||||| |||||||| Sbjct: 2838 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 2897 Query: 566 gtttgatg 573 |||||||| Sbjct: 2898 gtttgatg 2905
>ref|XM_478209.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4158 Score = 553 bits (279), Expect = e-154 Identities = 483/548 (88%), Gaps = 6/548 (1%) Strand = Plus / Plus Query: 27 atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86 |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3337 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 3396 Query: 87 gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 3397 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 3456 Query: 147 ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206 ||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 3457 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 3516 Query: 207 gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266 | |||||| || | ||||| || |||||||||||||||||||||||||||||||||| | Sbjct: 3517 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 3576 Query: 267 gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326 ||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 3577 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 3636 Query: 327 gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386 ||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||||| Sbjct: 3637 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 3696 Query: 387 tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446 || || |||||||||| ||||||||||| |||||| ||||||||| | ||||||||| Sbjct: 3697 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctc--agcatgatg 3751 Query: 447 aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506 || || | ||||||||||| || ||||| || ||||| ||||| |||||||| || ||| Sbjct: 3752 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 3811 Query: 507 cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565 ||||| |||||||||||||||||||| | | || ||||||||| ||||| |||||||| Sbjct: 3812 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 3871 Query: 566 gtttgatg 573 |||||||| Sbjct: 3872 gtttgatg 3879
>ref|XM_478210.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1806 Score = 442 bits (223), Expect = e-121 Identities = 403/461 (87%), Gaps = 4/461 (0%) Strand = Plus / Plus Query: 114 caggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgca 173 |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 564 caggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgct 623 Query: 174 gatttttcgactcaggcttctcaaggaggctatgctgttgaatatacacaagggcctcaa 233 |||||||| ||||||||||||||||||||||||| |||||| || | ||||| || ||| Sbjct: 624 gatttttccactcaggcttctcaaggaggctatggtgttgactactctcaaggaccccaa 683 Query: 234 tctggatatcctgggaattatttgaaccaaagtgcacatccagggtacccccatatcggt 293 ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| Sbjct: 684 tctggatatcctgggaattatttgaaccaaaatgcacacccagggtattcccatatgggt 743 Query: 294 gcaacaaatgacattgtatctcaggatcacatggcccatggttcacattccatgtttaca 353 ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct: 744 gcagcaaatgacattgtctctcaggatcacatggcccatggttcacatggaatgtttaca 803 Query: 354 caagctggatacaacgacccatcacaagatgaatcttctcagatgcattatggaatggct 413 ||||| |||||||| ||| | ||||||||||| || || |||||||||| |||||||||| Sbjct: 804 caagcgggatacaatgactcttcacaagatgagtcatcacagatgcattttggaatggct 863 Query: 414 gctcctggccatcttcagtcacagagcatgatgaatcctatgtactctcagtcgtacgct 473 | |||||| ||||||||| ||| ||||||||| || | ||||||||||| || ||| Sbjct: 864 ggtcctgg---tcttcagtctcagcccatgatgaacccgctctactctcagtcatatgct 920 Query: 474 cactataacactcaaccccagtctcttcagcctcctccgcagtgatcaggaaagcttgtc 533 || || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| Sbjct: 921 cattacaacacccaaccgcagtctctccaacctcctccccagtgatcaggaaagcttgtg 980 Query: 534 acacaa-ggctgaagcctaattaaattttggaagtttgatg 573 | | || ||||||||| ||||| |||||||||||||||| Sbjct: 981 atataattgctgaagccgcattaagttttggaagtttgatg 1021
>dbj|AK060293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-E02, full insert sequence Length = 1808 Score = 442 bits (223), Expect = e-121 Identities = 403/461 (87%), Gaps = 4/461 (0%) Strand = Plus / Plus Query: 114 caggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgca 173 |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 566 caggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgct 625 Query: 174 gatttttcgactcaggcttctcaaggaggctatgctgttgaatatacacaagggcctcaa 233 |||||||| ||||||||||||||||||||||||| |||||| || | ||||| || ||| Sbjct: 626 gatttttccactcaggcttctcaaggaggctatggtgttgactactctcaaggaccccaa 685 Query: 234 tctggatatcctgggaattatttgaaccaaagtgcacatccagggtacccccatatcggt 293 ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| Sbjct: 686 tctggatatcctgggaattatttgaaccaaaatgcacacccagggtattcccatatgggt 745 Query: 294 gcaacaaatgacattgtatctcaggatcacatggcccatggttcacattccatgtttaca 353 ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 gcagcaaatgacattgtctctcaggatcacatggcccatggttcacatggaatgtttaca 805 Query: 354 caagctggatacaacgacccatcacaagatgaatcttctcagatgcattatggaatggct 413 ||||| |||||||| ||| | ||||||||||| || || |||||||||| |||||||||| Sbjct: 806 caagcgggatacaatgactcttcacaagatgagtcatcacagatgcattttggaatggct 865 Query: 414 gctcctggccatcttcagtcacagagcatgatgaatcctatgtactctcagtcgtacgct 473 | |||||| ||||||||| ||| ||||||||| || | ||||||||||| || ||| Sbjct: 866 ggtcctgg---tcttcagtctcagcccatgatgaacccgctctactctcagtcatatgct 922 Query: 474 cactataacactcaaccccagtctcttcagcctcctccgcagtgatcaggaaagcttgtc 533 || || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| Sbjct: 923 cattacaacacccaaccgcagtctctccaacctcctccccagtgatcaggaaagcttgtg 982 Query: 534 acacaa-ggctgaagcctaattaaattttggaagtttgatg 573 | | || ||||||||| ||||| |||||||||||||||| Sbjct: 983 atataattgctgaagccgcattaagttttggaagtttgatg 1023
>gb|AY106305.1| Zea mays PCO061645 mRNA sequence Length = 1661 Score = 367 bits (185), Expect = 3e-98 Identities = 416/493 (84%) Strand = Plus / Plus Query: 27 atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86 ||||||||||| ||| | ||||||||||||||||| ||||| || ||||||||||||||| Sbjct: 466 atgtcccaatcgggattaatgacacagatgcctgttcaaggactaagtcaaacattccgt 525 Query: 87 gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146 ||||| ||| || |||||||||||||||||||||| ||| ||||||||| ||||||||| Sbjct: 526 gatggtttttccattggtgggatgtctcaggacttcattgtagatgattttaagagccaa 585 Query: 147 ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206 ||||| || ||| |||||||||||||||| ||||| || |||||||||||||| || ||| Sbjct: 586 ggatcacatgtgccatacaacattgcagaattttctacccaggcttctcaaggtggttat 645 Query: 207 gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266 | |||||| | ||| |||| ||| ||||||||||| ||||||||||| ||||||||| Sbjct: 646 ggtgttgagtttactcaagcgccccaatctggatactctgggaattatatgaaccaaaac 705 Query: 267 gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326 ||||||| || ||| ||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 706 acacatcctggatactcccatattggtacaacaaatgacattgtatctcaggatcacatg 765 Query: 327 gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386 |||||||| || || |||||||| |||| || || || || || || |||||||| Sbjct: 766 gcccatggatctcacggaatgtttacgcaagtggggtataatgatccgtcgcaagatgag 825 Query: 387 tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446 || |||||||| |||||||||||||||||| |||| | || || || |||||||||||| Sbjct: 826 tcatctcagattcattatggaatggctgctgctggtcccctacattcgcagagcatgatg 885 Query: 447 aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506 || || | |||||||| || || |||||||| ||||| || || || |||||||| ||| Sbjct: 886 aaccccttatactctcaatcctatgctcactacaacacccagccacattctcttcaacct 945 Query: 507 cctccgcagtgat 519 ||||| ||||||| Sbjct: 946 cctccccagtgat 958
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 151 bits (76), Expect = 3e-33 Identities = 118/132 (89%) Strand = Plus / Plus Query: 187 aggcttctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctg 246 ||||||||||||||||||||| |||||| || | ||||| || |||||||||||||||| Sbjct: 18510283 aggcttctcaaggaggctatggtgttgactactctcaaggaccccaatctggatatcctg 18510342 Query: 247 ggaattatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgaca 306 |||||||||||||||||| |||||| |||||||| ||||||| |||||| ||||||||| Sbjct: 18510343 ggaattatttgaaccaaaatgcacacccagggtattcccatatgggtgcagcaaatgaca 18510402 Query: 307 ttgtatctcagg 318 |||| ||||||| Sbjct: 18510403 ttgtctctcagg 18510414 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 315 caggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgaccca 374 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| | Sbjct: 18510509 caggatcacatggcccatggttcacatggaatgtttacacaagcgggatacaatgactct 18510568 Query: 375 tcacaagatgaatcttctcagatgcattatggaatggctgctcctgg 421 ||||||||||| || || |||||||||| ||||||||||| |||||| Sbjct: 18510569 tcacaagatgagtcatcacagatgcattttggaatggctggtcctgg 18510615 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 115 aggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgcag 174 ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct: 18510047 aggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgctg 18510106 Query: 175 atttttcgactcagg 189 ||||||| ||||||| Sbjct: 18510107 atttttccactcagg 18510121 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 52 agatgcctgtccaaggtcttagtcaaacattccgtgatgggtttaccgttggtgggatgt 111 ||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||| Sbjct: 18509901 agatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccattggtgggatgt 18509960 Query: 112 ctcagg 117 |||||| Sbjct: 18509961 ctcagg 18509966 Score = 93.7 bits (47), Expect = 7e-16 Identities = 102/119 (85%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 456 tactctcagtcgtacgctcactataacactcaaccccagtctcttcagcctcctccgcag 515 ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||| ||| Sbjct: 18510728 tactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccccag 18510787 Query: 516 tgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaagtttgatg 573 ||||||||||||||||| | | || ||||||||| ||||| |||||||||||||||| Sbjct: 18510788 tgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaagtttgatg 18510846
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 151 bits (76), Expect = 3e-33 Identities = 118/132 (89%) Strand = Plus / Plus Query: 187 aggcttctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctg 246 ||||||||||||||||||||| |||||| || | ||||| || |||||||||||||||| Sbjct: 39039 aggcttctcaaggaggctatggtgttgactactctcaaggaccccaatctggatatcctg 39098 Query: 247 ggaattatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgaca 306 |||||||||||||||||| |||||| |||||||| ||||||| |||||| ||||||||| Sbjct: 39099 ggaattatttgaaccaaaatgcacacccagggtattcccatatgggtgcagcaaatgaca 39158 Query: 307 ttgtatctcagg 318 |||| ||||||| Sbjct: 39159 ttgtctctcagg 39170 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 315 caggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgaccca 374 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| | Sbjct: 39265 caggatcacatggcccatggttcacatggaatgtttacacaagcgggatacaatgactct 39324 Query: 375 tcacaagatgaatcttctcagatgcattatggaatggctgctcctgg 421 ||||||||||| || || |||||||||| ||||||||||| |||||| Sbjct: 39325 tcacaagatgagtcatcacagatgcattttggaatggctggtcctgg 39371 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 115 aggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgcag 174 ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct: 38803 aggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgctg 38862 Query: 175 atttttcgactcagg 189 ||||||| ||||||| Sbjct: 38863 atttttccactcagg 38877 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 52 agatgcctgtccaaggtcttagtcaaacattccgtgatgggtttaccgttggtgggatgt 111 ||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||| Sbjct: 38657 agatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccattggtgggatgt 38716 Query: 112 ctcagg 117 |||||| Sbjct: 38717 ctcagg 38722 Score = 93.7 bits (47), Expect = 7e-16 Identities = 102/119 (85%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 456 tactctcagtcgtacgctcactataacactcaaccccagtctcttcagcctcctccgcag 515 ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||| ||| Sbjct: 39484 tactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccccag 39543 Query: 516 tgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaagtttgatg 573 ||||||||||||||||| | | || ||||||||| ||||| |||||||||||||||| Sbjct: 39544 tgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaagtttgatg 39602
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_B11 Length = 102824 Score = 151 bits (76), Expect = 3e-33 Identities = 118/132 (89%) Strand = Plus / Plus Query: 187 aggcttctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctg 246 ||||||||||||||||||||| |||||| || | ||||| || |||||||||||||||| Sbjct: 102131 aggcttctcaaggaggctatggtgttgactactctcaaggaccccaatctggatatcctg 102190 Query: 247 ggaattatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgaca 306 |||||||||||||||||| |||||| |||||||| ||||||| |||||| ||||||||| Sbjct: 102191 ggaattatttgaaccaaaatgcacacccagggtattcccatatgggtgcagcaaatgaca 102250 Query: 307 ttgtatctcagg 318 |||| ||||||| Sbjct: 102251 ttgtctctcagg 102262 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 315 caggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgaccca 374 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| | Sbjct: 102357 caggatcacatggcccatggttcacatggaatgtttacacaagcgggatacaatgactct 102416 Query: 375 tcacaagatgaatcttctcagatgcattatggaatggctgctcctgg 421 ||||||||||| || || |||||||||| ||||||||||| |||||| Sbjct: 102417 tcacaagatgagtcatcacagatgcattttggaatggctggtcctgg 102463 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 115 aggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgcag 174 ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct: 101895 aggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgctg 101954 Query: 175 atttttcgactcagg 189 ||||||| ||||||| Sbjct: 101955 atttttccactcagg 101969 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 52 agatgcctgtccaaggtcttagtcaaacattccgtgatgggtttaccgttggtgggatgt 111 ||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||| Sbjct: 101749 agatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccattggtgggatgt 101808 Query: 112 ctcagg 117 |||||| Sbjct: 101809 ctcagg 101814 Score = 93.7 bits (47), Expect = 7e-16 Identities = 102/119 (85%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 456 tactctcagtcgtacgctcactataacactcaaccccagtctcttcagcctcctccgcag 515 ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||| ||| Sbjct: 102576 tactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccccag 102635 Query: 516 tgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaagtttgatg 573 ||||||||||||||||| | | || ||||||||| ||||| |||||||||||||||| Sbjct: 102636 tgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaagtttgatg 102694
>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE Length = 126498 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 113 tcaggacttatttggagatgatttcaagagccaaggatc 151 ||||||||| || || ||||| ||||||||||||||||| Sbjct: 54518 tcaggacttcttgggtgatgacttcaagagccaaggatc 54480
>gb|U97405.1| Caenorhabditis elegans cosmid T09B4, complete sequence Length = 38336 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 551 aattaaattttggaagtttgat 572 |||||||||||||||||||||| Sbjct: 5198 aattaaattttggaagtttgat 5177
>ref|NM_073857.1| Caenorhabditis elegans W07G4.2 (W07G4.2) mRNA, complete cds Length = 1305 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 cttatttggagatgatttcaag 140 |||||||||||||||||||||| Sbjct: 762 cttatttggagatgatttcaag 783
>emb|Z78018.1|CEW07G4 Caenorhabditis elegans Cosmid W07G4, complete sequence Length = 31001 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 cttatttggagatgatttcaag 140 |||||||||||||||||||||| Sbjct: 15303 cttatttggagatgatttcaag 15282
>gb|AC184690.1| Pan troglodytes chromosome X clone CH251-483P23 map human ortholog p11.4, complete sequence Length = 192593 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 cactcaaccccagtctcttca 502 ||||||||||||||||||||| Sbjct: 163548 cactcaaccccagtctcttca 163528
>dbj|AB112673.1| Cucumis sativus CsARF3 mRNA for auxin response factor 3, complete cds Length = 3532 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 375 tcacaagatgaatcttctcagatgc 399 |||||||||||||| |||||||||| Sbjct: 2359 tcacaagatgaatcatctcagatgc 2383
>emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chromosome X, complete sequence Length = 95826 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ttcaagagccaaggatcccac 155 ||||||||||||||||||||| Sbjct: 52692 ttcaagagccaaggatcccac 52672
>gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 map human ortholog p11.4, complete sequence Length = 159881 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 cactcaaccccagtctcttca 502 ||||||||||||||||||||| Sbjct: 69165 cactcaaccccagtctcttca 69145
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 337101 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 cactcaaccccagtctcttca 502 ||||||||||||||||||||| Sbjct: 219744 cactcaaccccagtctcttca 219724
>gb|AY814571.1| Schistosoma japonicum SJCHGC02135 protein mRNA, complete cds Length = 1894 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 558 ttttggaagtttgatgaattgcat 581 |||||||||||||||||| ||||| Sbjct: 1138 ttttggaagtttgatgaaatgcat 1115
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 ctcctggccatcttcagtca 434 |||||||||||||||||||| Sbjct: 76305 ctcctggccatcttcagtca 76286
>emb|Z35918.1|SCYBR049C S.cerevisiae chromosome II reading frame ORF YBR049c Length = 4096 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gaattatttgaaccaaagtg 267 |||||||||||||||||||| Sbjct: 785 gaattatttgaaccaaagtg 804
>emb|Z46260.1|SCA10131 S.cerevisiae alphaS288C DNA of remnant delta gene for ribosomal protein S18 Length = 23920 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gaattatttgaaccaaagtg 267 |||||||||||||||||||| Sbjct: 1415 gaattatttgaaccaaagtg 1434
>ref|XM_782070.1| PREDICTED: Strongylocentrotus purpuratus similar to Rho-GTPase-activating protein 6 (Rho-type GTPase-activating protein RhoGAPX-1) (LOC582099), mRNA Length = 3537 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 agtctcttcagcctcctccg 512 |||||||||||||||||||| Sbjct: 2391 agtctcttcagcctcctccg 2372
>emb|AL646020.15| Mouse DNA sequence from clone RP23-74L9 on chromosome 11 Contains the gene for a novel histone H2A family member, a ribosomal protein L36a (Rpl36a) pseudogene, a SMT3 (supressor of mif two, 3) homolog (S. cerevisiae) (Smt3h) pseudogene, a ribosomal protein S15A (Rps15a) pseudogene, the Purb gene for purine rich element binding protein B, a novel gene and two CpG islands, complete sequence Length = 73838 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gtttacacaagctggataca 366 |||||||||||||||||||| Sbjct: 37231 gtttacacaagctggataca 37212
>gb|AC090638.11| Homo sapiens chromosome 18, clone RP11-429H5, complete sequence Length = 180429 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 taattaaattttggaagttt 569 |||||||||||||||||||| Sbjct: 3532 taattaaattttggaagttt 3551
>gb|AC099060.2| Homo sapiens chromosome 1 clone RP11-415A20, complete sequence Length = 152692 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tcagtcacagagcatgatga 447 |||||||||||||||||||| Sbjct: 134044 tcagtcacagagcatgatga 134025
>gb|AC105227.6| Homo sapiens chromosome 18, clone RP11-1030E3, complete sequence Length = 185568 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 taattaaattttggaagttt 569 |||||||||||||||||||| Sbjct: 29712 taattaaattttggaagttt 29693
>gb|AC111004.4| Homo sapiens BAC clone RP11-309E19 from 4, complete sequence Length = 27748 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 ctaattaaattttggaagtt 568 |||||||||||||||||||| Sbjct: 23170 ctaattaaattttggaagtt 23151
>gb|AC013759.6|AC013759 Homo sapiens chromosome 18, clone RP11-2E13, complete sequence Length = 166700 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 taattaaattttggaagttt 569 |||||||||||||||||||| Sbjct: 95401 taattaaattttggaagttt 95382
>dbj|AB070159.1| Macaca fascicularis testis cDNA clone:QtsA-15315, similar to human hypothetical protein FLJ25414, mRNA, NM_152343.1 Length = 1317 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 ctcctccgcagtgatcagga 524 |||||||||||||||||||| Sbjct: 942 ctcctccgcagtgatcagga 923
>emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14, complete sequence Length = 155287 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 tgaagcctaattaaattttg 562 |||||||||||||||||||| Sbjct: 58088 tgaagcctaattaaattttg 58069
>emb|Z35917.1|SCYBR048W S.cerevisiae chromosome II reading frame ORF YBR048w Length = 2031 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gaattatttgaaccaaagtg 267 |||||||||||||||||||| Sbjct: 1517 gaattatttgaaccaaagtg 1536
>dbj|AB093671.1| Macaca fascicularis brain cDNA clone:QflA-20559, full insert sequence Length = 1923 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 acaaatgacattgtatctcaggat 320 ||||||||||||||| |||||||| Sbjct: 367 acaaatgacattgtaactcaggat 344 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,348,381 Number of Sequences: 3902068 Number of extensions: 5348381 Number of successful extensions: 98269 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98127 Number of HSP's gapped (non-prelim): 127 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)