ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 559 e-156
2dbj|AK067729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 559 e-156
3dbj|AK065813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 559 e-156
4ref|XM_478209.1| Oryza sativa (japonica cultivar-group), mRNA 553 e-154
5ref|XM_478210.1| Oryza sativa (japonica cultivar-group), mRNA 442 e-121
6dbj|AK060293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 442 e-121
7gb|AY106305.1| Zea mays PCO061645 mRNA sequence 367 3e-98
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
9dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
10dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
11emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j2... 46 0.14
12gb|U97405.1| Caenorhabditis elegans cosmid T09B4, complete sequence 44 0.55
13ref|NM_073857.1| Caenorhabditis elegans W07G4.2 (W07G4.2) mRNA, ... 44 0.55
14emb|Z78018.1|CEW07G4 Caenorhabditis elegans Cosmid W07G4, comple... 44 0.55
15gb|AC184690.1| Pan troglodytes chromosome X clone CH251-483P23 m... 42 2.2
16dbj|AB112673.1| Cucumis sativus CsARF3 mRNA for auxin response f... 42 2.2
17emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chr... 42 2.2
18gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 ma... 42 2.2
19emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from... 42 2.2
20gb|AY814571.1| Schistosoma japonicum SJCHGC02135 protein mRNA, c... 40 8.6
21emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J... 40 8.6
22emb|Z35918.1|SCYBR049C S.cerevisiae chromosome II reading frame ... 40 8.6
23emb|Z46260.1|SCA10131 S.cerevisiae alphaS288C DNA of remnant del... 40 8.6
24ref|XM_782070.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.6
25emb|AL646020.15| Mouse DNA sequence from clone RP23-74L9 on chro... 40 8.6
26gb|AC090638.11| Homo sapiens chromosome 18, clone RP11-429H5, co... 40 8.6
27gb|AC099060.2| Homo sapiens chromosome 1 clone RP11-415A20, comp... 40 8.6
28gb|AC105227.6| Homo sapiens chromosome 18, clone RP11-1030E3, co... 40 8.6
29gb|AC111004.4| Homo sapiens BAC clone RP11-309E19 from 4, comple... 40 8.6
30gb|AC013759.6|AC013759 Homo sapiens chromosome 18, clone RP11-2E... 40 8.6
31dbj|AB070159.1| Macaca fascicularis testis cDNA clone:QtsA-15315... 40 8.6
32emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14,... 40 8.6
33emb|Z35917.1|SCYBR048W S.cerevisiae chromosome II reading frame ... 40 8.6
34dbj|AB093671.1| Macaca fascicularis brain cDNA clone:QflA-20559,... 40 8.6

>dbj|AK100573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105F12, full
            insert sequence
          Length = 2919

 Score =  559 bits (282), Expect = e-156
 Identities = 483/548 (88%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                        
Query: 27   atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86
            ||||||||  ||||| |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 1600 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 1659

                                                                        
Query: 87   gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146
            ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1660 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 1719

                                                                        
Query: 147  ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206
            ||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1720 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 1779

                                                                        
Query: 207  gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266
            | |||||| ||  | ||||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 1780 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 1839

                                                                        
Query: 267  gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326
            ||||| ||||||||  ||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct: 1840 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 1899

                                                                        
Query: 327  gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386
            |||||||||||||||   |||||||||||||| |||||||| ||| | ||||||||||| 
Sbjct: 1900 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 1959

                                                                        
Query: 387  tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446
            || || |||||||||| ||||||||||| ||||||   ||||||||| |||  |||||||
Sbjct: 1960 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctcagcccatgatg 2016

                                                                        
Query: 447  aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506
            || ||  | ||||||||||| || ||||| || ||||| ||||| |||||||| || |||
Sbjct: 2017 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 2076

                                                                        
Query: 507  cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565
            ||||| |||||||||||||||||||| | | ||  |||||||||  ||||| ||||||||
Sbjct: 2077 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 2136

                    
Query: 566  gtttgatg 573
            ||||||||
Sbjct: 2137 gtttgatg 2144



to top

>dbj|AK067729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F21, full
            insert sequence
          Length = 4032

 Score =  559 bits (282), Expect = e-156
 Identities = 483/548 (88%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                        
Query: 27   atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86
            ||||||||  ||||| |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 2884 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 2943

                                                                        
Query: 87   gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146
            ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2944 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 3003

                                                                        
Query: 147  ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206
            ||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 3004 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 3063

                                                                        
Query: 207  gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266
            | |||||| ||  | ||||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 3064 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 3123

                                                                        
Query: 267  gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326
            ||||| ||||||||  ||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct: 3124 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 3183

                                                                        
Query: 327  gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386
            |||||||||||||||   |||||||||||||| |||||||| ||| | ||||||||||| 
Sbjct: 3184 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 3243

                                                                        
Query: 387  tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446
            || || |||||||||| ||||||||||| ||||||   ||||||||| |||  |||||||
Sbjct: 3244 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctcagcccatgatg 3300

                                                                        
Query: 447  aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506
            || ||  | ||||||||||| || ||||| || ||||| ||||| |||||||| || |||
Sbjct: 3301 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 3360

                                                                        
Query: 507  cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565
            ||||| |||||||||||||||||||| | | ||  |||||||||  ||||| ||||||||
Sbjct: 3361 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 3420

                    
Query: 566  gtttgatg 573
            ||||||||
Sbjct: 3421 gtttgatg 3428



to top

>dbj|AK065813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042O08, full
            insert sequence
          Length = 3678

 Score =  559 bits (282), Expect = e-156
 Identities = 483/548 (88%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                        
Query: 27   atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86
            ||||||||  ||||| |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 2361 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 2420

                                                                        
Query: 87   gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146
            ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2421 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 2480

                                                                        
Query: 147  ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206
            ||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 2481 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 2540

                                                                        
Query: 207  gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266
            | |||||| ||  | ||||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 2541 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 2600

                                                                        
Query: 267  gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326
            ||||| ||||||||  ||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct: 2601 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 2660

                                                                        
Query: 327  gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386
            |||||||||||||||   |||||||||||||| |||||||| ||| | ||||||||||| 
Sbjct: 2661 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 2720

                                                                        
Query: 387  tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446
            || || |||||||||| ||||||||||| ||||||   ||||||||| |||  |||||||
Sbjct: 2721 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctcagcccatgatg 2777

                                                                        
Query: 447  aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506
            || ||  | ||||||||||| || ||||| || ||||| ||||| |||||||| || |||
Sbjct: 2778 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 2837

                                                                        
Query: 507  cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565
            ||||| |||||||||||||||||||| | | ||  |||||||||  ||||| ||||||||
Sbjct: 2838 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 2897

                    
Query: 566  gtttgatg 573
            ||||||||
Sbjct: 2898 gtttgatg 2905



to top

>ref|XM_478209.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4158

 Score =  553 bits (279), Expect = e-154
 Identities = 483/548 (88%), Gaps = 6/548 (1%)
 Strand = Plus / Plus

                                                                        
Query: 27   atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86
            ||||||||  ||||| |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 3337 atgtcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgc 3396

                                                                        
Query: 87   gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146
            ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3397 gatgggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaa 3456

                                                                        
Query: 147  ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206
            ||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 3457 ggatctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctat 3516

                                                                        
Query: 207  gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266
            | |||||| ||  | ||||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 3517 ggtgttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaat 3576

                                                                        
Query: 267  gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326
            ||||| ||||||||  ||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct: 3577 gcacacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatg 3636

                                                                        
Query: 327  gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386
            |||||||||||||||   |||||||||||||| |||||||| ||| | ||||||||||| 
Sbjct: 3637 gcccatggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgag 3696

                                                                        
Query: 387  tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446
            || || |||||||||| ||||||||||| ||||||   ||||||||| |  |||||||||
Sbjct: 3697 tcatcacagatgcattttggaatggctggtcctgg---tcttcagtctc--agcatgatg 3751

                                                                        
Query: 447  aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506
            || ||  | ||||||||||| || ||||| || ||||| ||||| |||||||| || |||
Sbjct: 3752 aacccgctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacct 3811

                                                                        
Query: 507  cctccgcagtgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaa 565
            ||||| |||||||||||||||||||| | | ||  |||||||||  ||||| ||||||||
Sbjct: 3812 cctccccagtgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaa 3871

                    
Query: 566  gtttgatg 573
            ||||||||
Sbjct: 3872 gtttgatg 3879



to top

>ref|XM_478210.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1806

 Score =  442 bits (223), Expect = e-121
 Identities = 403/461 (87%), Gaps = 4/461 (0%)
 Strand = Plus / Plus

                                                                        
Query: 114  caggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgca 173
            |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct: 564  caggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgct 623

                                                                        
Query: 174  gatttttcgactcaggcttctcaaggaggctatgctgttgaatatacacaagggcctcaa 233
            |||||||| ||||||||||||||||||||||||| |||||| ||  | ||||| || |||
Sbjct: 624  gatttttccactcaggcttctcaaggaggctatggtgttgactactctcaaggaccccaa 683

                                                                        
Query: 234  tctggatatcctgggaattatttgaaccaaagtgcacatccagggtacccccatatcggt 293
            ||||||||||||||||||||||||||||||| |||||| ||||||||  ||||||| |||
Sbjct: 684  tctggatatcctgggaattatttgaaccaaaatgcacacccagggtattcccatatgggt 743

                                                                        
Query: 294  gcaacaaatgacattgtatctcaggatcacatggcccatggttcacattccatgtttaca 353
            ||| ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||
Sbjct: 744  gcagcaaatgacattgtctctcaggatcacatggcccatggttcacatggaatgtttaca 803

                                                                        
Query: 354  caagctggatacaacgacccatcacaagatgaatcttctcagatgcattatggaatggct 413
            ||||| |||||||| ||| | ||||||||||| || || |||||||||| ||||||||||
Sbjct: 804  caagcgggatacaatgactcttcacaagatgagtcatcacagatgcattttggaatggct 863

                                                                        
Query: 414  gctcctggccatcttcagtcacagagcatgatgaatcctatgtactctcagtcgtacgct 473
            | ||||||   ||||||||| |||  ||||||||| ||  | ||||||||||| || |||
Sbjct: 864  ggtcctgg---tcttcagtctcagcccatgatgaacccgctctactctcagtcatatgct 920

                                                                        
Query: 474  cactataacactcaaccccagtctcttcagcctcctccgcagtgatcaggaaagcttgtc 533
            || || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| 
Sbjct: 921  cattacaacacccaaccgcagtctctccaacctcctccccagtgatcaggaaagcttgtg 980

                                                     
Query: 534  acacaa-ggctgaagcctaattaaattttggaagtttgatg 573
            | | ||  |||||||||  ||||| ||||||||||||||||
Sbjct: 981  atataattgctgaagccgcattaagttttggaagtttgatg 1021



to top

>dbj|AK060293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-E02, full
            insert sequence
          Length = 1808

 Score =  442 bits (223), Expect = e-121
 Identities = 403/461 (87%), Gaps = 4/461 (0%)
 Strand = Plus / Plus

                                                                        
Query: 114  caggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgca 173
            |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct: 566  caggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgct 625

                                                                        
Query: 174  gatttttcgactcaggcttctcaaggaggctatgctgttgaatatacacaagggcctcaa 233
            |||||||| ||||||||||||||||||||||||| |||||| ||  | ||||| || |||
Sbjct: 626  gatttttccactcaggcttctcaaggaggctatggtgttgactactctcaaggaccccaa 685

                                                                        
Query: 234  tctggatatcctgggaattatttgaaccaaagtgcacatccagggtacccccatatcggt 293
            ||||||||||||||||||||||||||||||| |||||| ||||||||  ||||||| |||
Sbjct: 686  tctggatatcctgggaattatttgaaccaaaatgcacacccagggtattcccatatgggt 745

                                                                        
Query: 294  gcaacaaatgacattgtatctcaggatcacatggcccatggttcacattccatgtttaca 353
            ||| ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||
Sbjct: 746  gcagcaaatgacattgtctctcaggatcacatggcccatggttcacatggaatgtttaca 805

                                                                        
Query: 354  caagctggatacaacgacccatcacaagatgaatcttctcagatgcattatggaatggct 413
            ||||| |||||||| ||| | ||||||||||| || || |||||||||| ||||||||||
Sbjct: 806  caagcgggatacaatgactcttcacaagatgagtcatcacagatgcattttggaatggct 865

                                                                        
Query: 414  gctcctggccatcttcagtcacagagcatgatgaatcctatgtactctcagtcgtacgct 473
            | ||||||   ||||||||| |||  ||||||||| ||  | ||||||||||| || |||
Sbjct: 866  ggtcctgg---tcttcagtctcagcccatgatgaacccgctctactctcagtcatatgct 922

                                                                        
Query: 474  cactataacactcaaccccagtctcttcagcctcctccgcagtgatcaggaaagcttgtc 533
            || || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| 
Sbjct: 923  cattacaacacccaaccgcagtctctccaacctcctccccagtgatcaggaaagcttgtg 982

                                                     
Query: 534  acacaa-ggctgaagcctaattaaattttggaagtttgatg 573
            | | ||  |||||||||  ||||| ||||||||||||||||
Sbjct: 983  atataattgctgaagccgcattaagttttggaagtttgatg 1023



to top

>gb|AY106305.1| Zea mays PCO061645 mRNA sequence
          Length = 1661

 Score =  367 bits (185), Expect = 3e-98
 Identities = 416/493 (84%)
 Strand = Plus / Plus

                                                                       
Query: 27  atgtcccaatctggactgatgacacagatgcctgtccaaggtcttagtcaaacattccgt 86
           ||||||||||| ||| | ||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 466 atgtcccaatcgggattaatgacacagatgcctgttcaaggactaagtcaaacattccgt 525

                                                                       
Query: 87  gatgggtttaccgttggtgggatgtctcaggacttatttggagatgatttcaagagccaa 146
           ||||| ||| || ||||||||||||||||||||||  ||| ||||||||| |||||||||
Sbjct: 526 gatggtttttccattggtgggatgtctcaggacttcattgtagatgattttaagagccaa 585

                                                                       
Query: 147 ggatcccacgtggcatacaacattgcagatttttcgactcaggcttctcaaggaggctat 206
           ||||| || ||| |||||||||||||||| ||||| || |||||||||||||| || |||
Sbjct: 586 ggatcacatgtgccatacaacattgcagaattttctacccaggcttctcaaggtggttat 645

                                                                       
Query: 207 gctgttgaatatacacaagggcctcaatctggatatcctgggaattatttgaaccaaagt 266
           | |||||| | ||| |||| ||| |||||||||||  ||||||||||| |||||||||  
Sbjct: 646 ggtgttgagtttactcaagcgccccaatctggatactctgggaattatatgaaccaaaac 705

                                                                       
Query: 267 gcacatccagggtacccccatatcggtgcaacaaatgacattgtatctcaggatcacatg 326
            ||||||| || ||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 706 acacatcctggatactcccatattggtacaacaaatgacattgtatctcaggatcacatg 765

                                                                       
Query: 327 gcccatggttcacattccatgtttacacaagctggatacaacgacccatcacaagatgaa 386
           |||||||| || ||    |||||||| ||||  || || || || || || |||||||| 
Sbjct: 766 gcccatggatctcacggaatgtttacgcaagtggggtataatgatccgtcgcaagatgag 825

                                                                       
Query: 387 tcttctcagatgcattatggaatggctgctcctggccatcttcagtcacagagcatgatg 446
           || |||||||| |||||||||||||||||| |||| |  || || || ||||||||||||
Sbjct: 826 tcatctcagattcattatggaatggctgctgctggtcccctacattcgcagagcatgatg 885

                                                                       
Query: 447 aatcctatgtactctcagtcgtacgctcactataacactcaaccccagtctcttcagcct 506
           || ||  | |||||||| || || |||||||| ||||| || || || |||||||| |||
Sbjct: 886 aaccccttatactctcaatcctatgctcactacaacacccagccacattctcttcaacct 945

                        
Query: 507 cctccgcagtgat 519
           ||||| |||||||
Sbjct: 946 cctccccagtgat 958



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  151 bits (76), Expect = 3e-33
 Identities = 118/132 (89%)
 Strand = Plus / Plus

                                                                            
Query: 187      aggcttctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctg 246
                ||||||||||||||||||||| |||||| ||  | ||||| || ||||||||||||||||
Sbjct: 18510283 aggcttctcaaggaggctatggtgttgactactctcaaggaccccaatctggatatcctg 18510342

                                                                            
Query: 247      ggaattatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgaca 306
                |||||||||||||||||| |||||| ||||||||  ||||||| |||||| |||||||||
Sbjct: 18510343 ggaattatttgaaccaaaatgcacacccagggtattcccatatgggtgcagcaaatgaca 18510402

                            
Query: 307      ttgtatctcagg 318
                |||| |||||||
Sbjct: 18510403 ttgtctctcagg 18510414



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                            
Query: 315      caggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgaccca 374
                |||||||||||||||||||||||||||   |||||||||||||| |||||||| ||| | 
Sbjct: 18510509 caggatcacatggcccatggttcacatggaatgtttacacaagcgggatacaatgactct 18510568

                                                               
Query: 375      tcacaagatgaatcttctcagatgcattatggaatggctgctcctgg 421
                ||||||||||| || || |||||||||| ||||||||||| ||||||
Sbjct: 18510569 tcacaagatgagtcatcacagatgcattttggaatggctggtcctgg 18510615



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                            
Query: 115      aggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgcag 174
                ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 18510047 aggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgctg 18510106

                               
Query: 175      atttttcgactcagg 189
                ||||||| |||||||
Sbjct: 18510107 atttttccactcagg 18510121



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                            
Query: 52       agatgcctgtccaaggtcttagtcaaacattccgtgatgggtttaccgttggtgggatgt 111
                ||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct: 18509901 agatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccattggtgggatgt 18509960

                      
Query: 112      ctcagg 117
                ||||||
Sbjct: 18509961 ctcagg 18509966



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 102/119 (85%), Gaps = 1/119 (0%)
 Strand = Plus / Plus

                                                                            
Query: 456      tactctcagtcgtacgctcactataacactcaaccccagtctcttcagcctcctccgcag 515
                ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||| |||
Sbjct: 18510728 tactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccccag 18510787

                                                                           
Query: 516      tgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaagtttgatg 573
                ||||||||||||||||| | | ||  |||||||||  ||||| ||||||||||||||||
Sbjct: 18510788 tgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaagtttgatg 18510846



to top

>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score =  151 bits (76), Expect = 3e-33
 Identities = 118/132 (89%)
 Strand = Plus / Plus

                                                                         
Query: 187   aggcttctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctg 246
             ||||||||||||||||||||| |||||| ||  | ||||| || ||||||||||||||||
Sbjct: 39039 aggcttctcaaggaggctatggtgttgactactctcaaggaccccaatctggatatcctg 39098

                                                                         
Query: 247   ggaattatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgaca 306
             |||||||||||||||||| |||||| ||||||||  ||||||| |||||| |||||||||
Sbjct: 39099 ggaattatttgaaccaaaatgcacacccagggtattcccatatgggtgcagcaaatgaca 39158

                         
Query: 307   ttgtatctcagg 318
             |||| |||||||
Sbjct: 39159 ttgtctctcagg 39170



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                         
Query: 315   caggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgaccca 374
             |||||||||||||||||||||||||||   |||||||||||||| |||||||| ||| | 
Sbjct: 39265 caggatcacatggcccatggttcacatggaatgtttacacaagcgggatacaatgactct 39324

                                                            
Query: 375   tcacaagatgaatcttctcagatgcattatggaatggctgctcctgg 421
             ||||||||||| || || |||||||||| ||||||||||| ||||||
Sbjct: 39325 tcacaagatgagtcatcacagatgcattttggaatggctggtcctgg 39371



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                         
Query: 115   aggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgcag 174
             ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 38803 aggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgctg 38862

                            
Query: 175   atttttcgactcagg 189
             ||||||| |||||||
Sbjct: 38863 atttttccactcagg 38877



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                         
Query: 52    agatgcctgtccaaggtcttagtcaaacattccgtgatgggtttaccgttggtgggatgt 111
             ||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct: 38657 agatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccattggtgggatgt 38716

                   
Query: 112   ctcagg 117
             ||||||
Sbjct: 38717 ctcagg 38722



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 102/119 (85%), Gaps = 1/119 (0%)
 Strand = Plus / Plus

                                                                         
Query: 456   tactctcagtcgtacgctcactataacactcaaccccagtctcttcagcctcctccgcag 515
             ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||| |||
Sbjct: 39484 tactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccccag 39543

                                                                        
Query: 516   tgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaagtttgatg 573
             ||||||||||||||||| | | ||  |||||||||  ||||| ||||||||||||||||
Sbjct: 39544 tgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaagtttgatg 39602



to top

>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_B11
          Length = 102824

 Score =  151 bits (76), Expect = 3e-33
 Identities = 118/132 (89%)
 Strand = Plus / Plus

                                                                          
Query: 187    aggcttctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctg 246
              ||||||||||||||||||||| |||||| ||  | ||||| || ||||||||||||||||
Sbjct: 102131 aggcttctcaaggaggctatggtgttgactactctcaaggaccccaatctggatatcctg 102190

                                                                          
Query: 247    ggaattatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgaca 306
              |||||||||||||||||| |||||| ||||||||  ||||||| |||||| |||||||||
Sbjct: 102191 ggaattatttgaaccaaaatgcacacccagggtattcccatatgggtgcagcaaatgaca 102250

                          
Query: 307    ttgtatctcagg 318
              |||| |||||||
Sbjct: 102251 ttgtctctcagg 102262



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                          
Query: 315    caggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgaccca 374
              |||||||||||||||||||||||||||   |||||||||||||| |||||||| ||| | 
Sbjct: 102357 caggatcacatggcccatggttcacatggaatgtttacacaagcgggatacaatgactct 102416

                                                             
Query: 375    tcacaagatgaatcttctcagatgcattatggaatggctgctcctgg 421
              ||||||||||| || || |||||||||| ||||||||||| ||||||
Sbjct: 102417 tcacaagatgagtcatcacagatgcattttggaatggctggtcctgg 102463



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                          
Query: 115    aggacttatttggagatgatttcaagagccaaggatcccacgtggcatacaacattgcag 174
              ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 101895 aggacttctttggagatgatttcaagagccaaggatctcatgtggcatacaacattgctg 101954

                             
Query: 175    atttttcgactcagg 189
              ||||||| |||||||
Sbjct: 101955 atttttccactcagg 101969



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                          
Query: 52     agatgcctgtccaaggtcttagtcaaacattccgtgatgggtttaccgttggtgggatgt 111
              ||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct: 101749 agatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccattggtgggatgt 101808

                    
Query: 112    ctcagg 117
              ||||||
Sbjct: 101809 ctcagg 101814



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 102/119 (85%), Gaps = 1/119 (0%)
 Strand = Plus / Plus

                                                                          
Query: 456    tactctcagtcgtacgctcactataacactcaaccccagtctcttcagcctcctccgcag 515
              ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||| |||
Sbjct: 102576 tactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccccag 102635

                                                                         
Query: 516    tgatcaggaaagcttgtcacacaa-ggctgaagcctaattaaattttggaagtttgatg 573
              ||||||||||||||||| | | ||  |||||||||  ||||| ||||||||||||||||
Sbjct: 102636 tgatcaggaaagcttgtgatataattgctgaagccgcattaagttttggaagtttgatg 102694



to top

>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE
          Length = 126498

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 113   tcaggacttatttggagatgatttcaagagccaaggatc 151
             ||||||||| || || ||||| |||||||||||||||||
Sbjct: 54518 tcaggacttcttgggtgatgacttcaagagccaaggatc 54480



to top

>gb|U97405.1| Caenorhabditis elegans cosmid T09B4, complete sequence
          Length = 38336

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 551  aattaaattttggaagtttgat 572
            ||||||||||||||||||||||
Sbjct: 5198 aattaaattttggaagtttgat 5177



to top

>ref|NM_073857.1| Caenorhabditis elegans W07G4.2 (W07G4.2) mRNA, complete cds
          Length = 1305

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 cttatttggagatgatttcaag 140
           ||||||||||||||||||||||
Sbjct: 762 cttatttggagatgatttcaag 783



to top

>emb|Z78018.1|CEW07G4 Caenorhabditis elegans Cosmid W07G4, complete sequence
          Length = 31001

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 119   cttatttggagatgatttcaag 140
             ||||||||||||||||||||||
Sbjct: 15303 cttatttggagatgatttcaag 15282



to top

>gb|AC184690.1| Pan troglodytes chromosome X clone CH251-483P23 map human ortholog p11.4,
              complete sequence
          Length = 192593

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 482    cactcaaccccagtctcttca 502
              |||||||||||||||||||||
Sbjct: 163548 cactcaaccccagtctcttca 163528



to top

>dbj|AB112673.1| Cucumis sativus CsARF3 mRNA for auxin response factor 3, complete cds
          Length = 3532

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 375  tcacaagatgaatcttctcagatgc 399
            |||||||||||||| ||||||||||
Sbjct: 2359 tcacaagatgaatcatctcagatgc 2383



to top

>emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chromosome X, complete
             sequence
          Length = 95826

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   ttcaagagccaaggatcccac 155
             |||||||||||||||||||||
Sbjct: 52692 ttcaagagccaaggatcccac 52672



to top

>gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 map human ortholog
             p11.4, complete sequence
          Length = 159881

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 482   cactcaaccccagtctcttca 502
             |||||||||||||||||||||
Sbjct: 69165 cactcaaccccagtctcttca 69145



to top

>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region
              DXS709-SRPX, complete sequence
          Length = 337101

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 482    cactcaaccccagtctcttca 502
              |||||||||||||||||||||
Sbjct: 219744 cactcaaccccagtctcttca 219724



to top

>gb|AY814571.1| Schistosoma japonicum SJCHGC02135 protein mRNA, complete cds
          Length = 1894

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 558  ttttggaagtttgatgaattgcat 581
            |||||||||||||||||| |||||
Sbjct: 1138 ttttggaagtttgatgaaatgcat 1115



to top

>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3
             Contains part of the TNR gene for tenascin R (restrictin,
             janusin), a novel gene and one CpG island, complete
             sequence
          Length = 138636

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   ctcctggccatcttcagtca 434
             ||||||||||||||||||||
Sbjct: 76305 ctcctggccatcttcagtca 76286



to top

>emb|Z35918.1|SCYBR049C S.cerevisiae chromosome II reading frame ORF YBR049c
          Length = 4096

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 gaattatttgaaccaaagtg 267
           ||||||||||||||||||||
Sbjct: 785 gaattatttgaaccaaagtg 804



to top

>emb|Z46260.1|SCA10131 S.cerevisiae alphaS288C DNA of remnant delta gene for ribosomal
            protein S18
          Length = 23920

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gaattatttgaaccaaagtg 267
            ||||||||||||||||||||
Sbjct: 1415 gaattatttgaaccaaagtg 1434



to top

>ref|XM_782070.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Rho-GTPase-activating protein 6 (Rho-type
            GTPase-activating protein RhoGAPX-1) (LOC582099), mRNA
          Length = 3537

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 493  agtctcttcagcctcctccg 512
            ||||||||||||||||||||
Sbjct: 2391 agtctcttcagcctcctccg 2372



to top

>emb|AL646020.15| Mouse DNA sequence from clone RP23-74L9 on chromosome 11 Contains the
             gene for a novel histone H2A family member, a ribosomal
             protein L36a (Rpl36a) pseudogene, a SMT3 (supressor of mif
             two, 3) homolog (S. cerevisiae) (Smt3h) pseudogene, a
             ribosomal protein S15A (Rps15a) pseudogene, the Purb gene
             for purine rich element binding protein B, a novel gene
             and two CpG islands, complete sequence
          Length = 73838

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   gtttacacaagctggataca 366
             ||||||||||||||||||||
Sbjct: 37231 gtttacacaagctggataca 37212



to top

>gb|AC090638.11| Homo sapiens chromosome 18, clone RP11-429H5, complete sequence
          Length = 180429

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  taattaaattttggaagttt 569
            ||||||||||||||||||||
Sbjct: 3532 taattaaattttggaagttt 3551



to top

>gb|AC099060.2| Homo sapiens chromosome 1 clone RP11-415A20, complete sequence
          Length = 152692

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    tcagtcacagagcatgatga 447
              ||||||||||||||||||||
Sbjct: 134044 tcagtcacagagcatgatga 134025



to top

>gb|AC105227.6| Homo sapiens chromosome 18, clone RP11-1030E3, complete sequence
          Length = 185568

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   taattaaattttggaagttt 569
             ||||||||||||||||||||
Sbjct: 29712 taattaaattttggaagttt 29693



to top

>gb|AC111004.4| Homo sapiens BAC clone RP11-309E19 from 4, complete sequence
          Length = 27748

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   ctaattaaattttggaagtt 568
             ||||||||||||||||||||
Sbjct: 23170 ctaattaaattttggaagtt 23151



to top

>gb|AC013759.6|AC013759 Homo sapiens chromosome 18, clone RP11-2E13, complete sequence
          Length = 166700

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   taattaaattttggaagttt 569
             ||||||||||||||||||||
Sbjct: 95401 taattaaattttggaagttt 95382



to top

>dbj|AB070159.1| Macaca fascicularis testis cDNA clone:QtsA-15315, similar to human
           hypothetical protein FLJ25414, mRNA, NM_152343.1
          Length = 1317

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 505 ctcctccgcagtgatcagga 524
           ||||||||||||||||||||
Sbjct: 942 ctcctccgcagtgatcagga 923



to top

>emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14, complete sequence
          Length = 155287

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   tgaagcctaattaaattttg 562
             ||||||||||||||||||||
Sbjct: 58088 tgaagcctaattaaattttg 58069



to top

>emb|Z35917.1|SCYBR048W S.cerevisiae chromosome II reading frame ORF YBR048w
          Length = 2031

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gaattatttgaaccaaagtg 267
            ||||||||||||||||||||
Sbjct: 1517 gaattatttgaaccaaagtg 1536



to top

>dbj|AB093671.1| Macaca fascicularis brain cDNA clone:QflA-20559, full insert
           sequence
          Length = 1923

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 297 acaaatgacattgtatctcaggat 320
           ||||||||||||||| ||||||||
Sbjct: 367 acaaatgacattgtaactcaggat 344


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,348,381
Number of Sequences: 3902068
Number of extensions: 5348381
Number of successful extensions: 98269
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98127
Number of HSP's gapped (non-prelim): 127
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top