ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15f07 |
|---|---|
| Clone Library Name | barley_pub |
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 126 bits (316), Expect = 5e-29 Identities = 67/170 (39%), Positives = 102/170 (60%) Frame = +3 Query: 51 KDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXX 230 K+ + K Q+++++ Q + + VLY+GH+P G +E Q++ +F+QFG Sbjct: 20 KEDAEFQKKVQQVKKRPQTGQTLSPG-VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSR 78 Query: 231 XXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGF 410 TG SK YGF+EFE EVAKIVA+ MNNYL+ E ++ ++PPEKVH KL+ G GF Sbjct: 79 SKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGF 138 Query: 411 IPVDRVAIERNRLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYECP 560 A+ R +K T ++ KK+ ++ ++ K RKR+ A GIDY+ P Sbjct: 139 KKPKYPAV--TRYNKTHTEDDVKKVGTKLLSKESKLRKRLAAKGIDYDFP 186
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 124 bits (310), Expect = 2e-28 Identities = 70/170 (41%), Positives = 95/170 (55%) Frame = +3 Query: 51 KDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXX 230 KDF + K IR K Q + V+YIGH+P YE Q++ +F QFG Sbjct: 20 KDF---QQKVHEIRRKSQVGAV--SPGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSR 74 Query: 231 XXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGF 410 TG SK Y ++EFE EVAKIVAD MNNYL E L+ VPPEKVH +L+ G F Sbjct: 75 SKKTGNSKGYAYVEFECDEVAKIVADTMNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKF 134 Query: 411 IPVDRVAIERNRLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYECP 560 + A+ +R +K ++ E KKM + ++ ++ K RKR+ GIDY+ P Sbjct: 135 RKPTKPAV--SRYNKRRSEAEQKKMTQRMLSKENKVRKRLAEKGIDYDFP 182
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 119 bits (299), Expect = 5e-27 Identities = 67/162 (41%), Positives = 90/162 (55%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSK 254 K IR K++A T V+YIGH+P E Q+Q +F QFG TG SK Sbjct: 25 KVHDIRRKRKANAL--TPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSK 82 Query: 255 HYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAI 434 Y ++E+E EVAKIVAD MNNYL E L+ V PEKVH +L+ G F + A+ Sbjct: 83 GYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAV 142 Query: 435 ERNRLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYECP 560 R ++K EE KKM + ++ ++ K RKR+ GIDY+ P Sbjct: 143 TRYNSKRNK--EEVKKMTQRMISKEYKLRKRLAEKGIDYDFP 182
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 105 bits (262), Expect = 9e-23 Identities = 58/161 (36%), Positives = 93/161 (57%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHY 260 +RI ++K+ E+ T V+Y+ H+P+ E Q+ +F QFG TG SK Y Sbjct: 31 KRITQRKKQEQL--TPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGY 88 Query: 261 GFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIER 440 F+EFE+ +VAKIVA+ MNNYL E L+ +PPEKVH +L+K F +++ Sbjct: 89 AFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVK- 147 Query: 441 NRLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYECPA 563 R ++++T+ + +M E K++ RK++ GIDY+ P+ Sbjct: 148 -RYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPS 187
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 94.0 bits (232), Expect = 3e-19 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 8/168 (4%) Frame = +3 Query: 75 KEQRIREKKQAEEP--------ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXX 230 K +R+ KKQA E E + ++Y+ +PHGF+E ++ +F QFG Sbjct: 65 KIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLAR 124 Query: 231 XXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGF 410 TG S+HYGF+EF N E A I + MNNYLL H LQ+ ++P KL+K + Sbjct: 125 NKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKK--- 181 Query: 411 IPVDRVAIERNRLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYE 554 RV +E+ K ++++ K ++ E+R K++ +GI+++ Sbjct: 182 ----RVLVEKGITKPVKQLKDNMK------QKHEERIKKLAKSGIEFK 219
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 86.3 bits (212), Expect = 6e-17 Identities = 51/160 (31%), Positives = 82/160 (51%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 R ++ +Q ++ + V+Y+GH+P E + + QFG TG SK Y Sbjct: 32 RTKKPQQKKKEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYA 91 Query: 264 FIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERN 443 F+EFE+ +VAKIVA+ M+NYL E L +P +KVH L+ F A++ Sbjct: 92 FVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPAVK-- 149 Query: 444 RLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYECPA 563 R ++ + + KM K+++ RK++ A GIDY P+ Sbjct: 150 RYNRKRGHLQMLKMEYRFKKKEKLLRKKLAAKGIDYSFPS 189
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 LY+G + ED ++G F+ FG TG+SK YGFI F + E AK +++ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 315 NNYLLFEHTLQIALV 359 N + L +++ V Sbjct: 312 NGFELAGRPMKVGHV 326
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 LY+G + ED ++G F+ FG TG+SK YGFI F + E AK +++ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 315 NNYLLFEHTLQIALV 359 N + L +++ V Sbjct: 312 NGFELAGRPMKVGHV 326
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 LY+G + ED ++G F+ FG TG+SK YGFI F + E A+ +++ Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 315 NNYLLFEHTLQIALV 359 N + L +++ V Sbjct: 325 NGFELAGRPMRVGHV 339
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 42.7 bits (99), Expect = 7e-04 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 V+++G++P+ E QM F Q G TG K YGF EF + E + + Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67 Query: 312 MNN 320 +NN Sbjct: 68 LNN 70
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/85 (28%), Positives = 37/85 (43%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 Q E PE L+I H+P F + + F FG T SK +GF+ ++N Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 451 Query: 282 PEVAKIVADEMNNYLLFEHTLQIAL 356 P A+ MN + + L++ L Sbjct: 452 PVSAQAAIQSMNGFQIGMKRLKVQL 476
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/85 (28%), Positives = 37/85 (43%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 Q E PE L+I H+P F + + F FG T SK +GF+ ++N Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 451 Query: 282 PEVAKIVADEMNNYLLFEHTLQIAL 356 P A+ MN + + L++ L Sbjct: 452 PVSAQAAIQSMNGFQIGMKRLKVQL 476
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P+ E+Q++ F + G TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 315 NNYLLFEHTLQIALVPPEK 371 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P+ E+Q++ F + G TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 315 NNYLLFEHTLQIALVPPEK 371 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P+ E+Q++ F + G TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 315 NNYLLFEHTLQIALVPPEK 371 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/91 (23%), Positives = 36/91 (39%) Frame = +3 Query: 108 EEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPE 287 E EN L++ + ED++Q F +FG T S+ +GF+ F E Sbjct: 94 EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153 Query: 288 VAKIVADEMNNYLLFEHTLQIALVPPEKVHA 380 A D +N+ + L + + H+ Sbjct: 154 EATSAIDNLNSQEFYGRVLNVQKAKRSRPHS 184
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 40.4 bits (93), Expect = 0.003 Identities = 33/158 (20%), Positives = 67/158 (42%) Frame = +3 Query: 6 RVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQG 185 RV S P+ G G P R ++ E+ + L++G++ E ++ Sbjct: 338 RVRPAYSLEPRVGAGAGAAPF-----REVDEISPEDDQRANRTLFLGNLDITVTESDLRR 392 Query: 186 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPP 365 F +FG G++ YGF++FEN +++ M+ ++ + ++I Sbjct: 393 AFDRFGVITEVDIKRPSR-GQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKA 451 Query: 366 EKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHK 479 +LW G ++P+ +A E +R +T++ K Sbjct: 452 TPT-TRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRK 488
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 40.4 bits (93), Expect = 0.003 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 ++Q ++ Q + + A + +Y+G + ED ++ F FG T K Sbjct: 110 QQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQK 169 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 350 K + F+E+E PE A++ ++MN L+ +++ Sbjct: 170 HKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV 203 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 + +E + +Y+ + E+ ++ F+ FG K YGFIE+ N Sbjct: 218 EVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYAN 277 Query: 282 PEVAKIVADEMNNYLLFEHTLQI--ALVPP 365 + MN + L L++ ++ PP Sbjct: 278 KQAMDEAIASMNLFDLGGQLLRVGRSITPP 307
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P+ E+Q++ F + G TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 315 NNYLLFEHTLQIALVPPEK 371 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/74 (25%), Positives = 38/74 (51%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +Y+ ++P +D+++ F ++G +G S+ +GF+ F +PE A + + Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 283 Query: 309 EMNNYLLFEHTLQI 350 +MN L E L + Sbjct: 284 KMNGISLGEDVLYV 297 Score = 37.4 bits (85), Expect = 0.029 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATV----LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 +E+ +R K + E + LY+ ++ +++++ F ++G Sbjct: 306 REEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ- 364 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 G S+ +GF+ + NPE A + EMN ++ L +AL Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402 Score = 35.8 bits (81), Expect = 0.086 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Frame = +3 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGF--IP 416 G+SK YGF++FE E A+ D++N LL + + + + A+ G F + Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228 Query: 417 VDRVAIERNRLSKDKTVEEHKKMVEGIVKRDEKRRKR 527 V + E KT ++ + +V +D+ R Sbjct: 229 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 265
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%) Frame = +3 Query: 33 PKTGDGKDFLP-------LEGKEQRIREKKQAEEP--ENT-ATVLYIGHVPHGFYEDQMQ 182 P T DG++ P ++ + R RE Q +EP EN+ + +++G +PH E +++ Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELK 131 Query: 183 GFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPE 287 +F +FG + + +GFI FE+ + Sbjct: 132 EYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 166 Score = 31.2 bits (69), Expect = 2.1 Identities = 11/50 (22%), Positives = 27/50 (54%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENP 284 L++G + ++ ++ +F Q+G T +S+ +GF++F++P Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +3 Query: 30 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXX 209 G K GK F+P + +E+ + EK + T +Y+ + F +++++ FF+ +G Sbjct: 157 GKKVYVGK-FIPRKEREKELGEKAKL------FTNVYVKNFTEDFDDEKLKEFFEPYGKI 209 Query: 210 XXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 GKSK +GF+ FE E A+ +N Sbjct: 210 TSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALN 244 Score = 33.5 bits (75), Expect = 0.43 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAK 383 G SK YGF+ FE E A D++N LL + + P K K Sbjct: 127 GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/93 (21%), Positives = 38/93 (40%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ E KQ LY+ ++ +D+++ F +G G+SK Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKG 328 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F A E+N ++ L +AL Sbjct: 329 FGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P+ E+Q++ F + G TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 315 NNYLLFEHTLQIALVPPEK 371 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P+ E+Q++ F + G TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 315 NNYLLFEHTLQIALVPPEK 371 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 40.4 bits (93), Expect = 0.003 Identities = 28/117 (23%), Positives = 52/117 (44%) Frame = +3 Query: 63 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 P G R++ A + E A +++G + + ++ +F +FG T Sbjct: 46 PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFI 413 G+S+ +GFI F++ + V D+ EH L ++ P+K A V+K F+ Sbjct: 106 GRSRGFGFILFKDAASVEKVLDQK------EHRLDGRVIDPKKAMAMKKDPVKKIFV 156
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 40.0 bits (92), Expect = 0.005 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 8/150 (5%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 + + PEN V + V ++ + F +FG TG S Y FIEFEN Sbjct: 242 EVKPPENVLFVCKLNPVTQ---DEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFEN 298 Query: 282 PEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWK--------GVRKGFIPVDRVAIE 437 + + +M L+ +H + + ++ W+ G R GF V + + Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHVDFSQSVSKLSESWRNATISKRSGQRGGFGGVASLEKK 358 Query: 438 RNRLSKDKTVEEHKKMVEGIVKRDEKRRKR 527 R + D E+ K D+ R+R Sbjct: 359 RQYRASDNAREKENDYTLVFDKGDKAPRRR 388
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/130 (22%), Positives = 56/130 (43%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A +G G P + ++ A + E A +++G + + ++ +F +FG Sbjct: 40 AASAGSGGGTTTAPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFG 99 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAK 383 TG+S+ +GFI F++ + V D+ EH L ++ P+K A Sbjct: 100 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK------EHRLDGRVIDPKKAMAM 153 Query: 384 LWKGVRKGFI 413 V+K F+ Sbjct: 154 KKDPVKKIFV 163
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 E E+ +K++ EE E AT+ ++G + ++ ++ F+ G T + Sbjct: 149 EEDEESSNKKQKNEETEEPATI-FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207 Query: 249 SKHYGFIEFENPEVAKIVADEM 314 S+ YG+++FEN A+ EM Sbjct: 208 SRGYGYVDFENKSYAEKAIQEM 229 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/92 (20%), Positives = 37/92 (40%) Frame = +3 Query: 90 REKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFI 269 R KK + P + L++G++ D + F + G T + K +G++ Sbjct: 254 RAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYV 313 Query: 270 EFENPEVAKIVADEMNNYLLFEHTLQIALVPP 365 +F N E AK D + + +++ P Sbjct: 314 QFSNMEDAKKALDALQGEYIDNRPVRLDFSSP 345
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Frame = +3 Query: 15 SRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP---------------ENTATVLYIGH 149 S + ++GD E + EKK+ EP N +++G Sbjct: 210 SSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGR 269 Query: 150 VPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 + + + F+++G +G+SK YG+++FE PE AK Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 + R+RE++ + + + T +L + ++P + Q + + FG TG+SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 174 Query: 258 YGFIEF-ENPEVAKIVADEMNNYL----LFEHTLQIALVPPEKVHAK 383 YGF E+ + A+ +D + L L+ H + P +H++ Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSR 221
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/83 (21%), Positives = 40/83 (48%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 E++ T L + ++P +++++ F G TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP 117 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +3 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 F FG T K K +GF+ N + A + +N Y L + LQ++ Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/83 (21%), Positives = 40/83 (48%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 E++ T L + ++P +++++ F G TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP 117 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +3 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 F FG T K K +GF+ N + A + +N Y L + LQ++ Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/99 (22%), Positives = 42/99 (42%) Frame = +3 Query: 21 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQF 200 RS+ D +FL + + + K L+IG + E+ ++G F+++ Sbjct: 55 RSSSSSHSDSPEFLRINNNKSGHKNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKY 114 Query: 201 GXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 T KS +G++ FE+ E A+ +E+N Sbjct: 115 PSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELN 153
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +3 Query: 90 REKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFI 269 +E+K A + E + +++G++ +Q++ F+ G TG K YG+I Sbjct: 51 KEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110 Query: 270 EFENP 284 EFE+P Sbjct: 111 EFESP 115
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 39.3 bits (90), Expect = 0.008 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Frame = +3 Query: 87 IREKKQAEEPENTATV----LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSK 254 IR +++A + ENT T +Y+ ++P ED+++ F +FG +G S+ Sbjct: 212 IRRQERARD-ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSR 269 Query: 255 HYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 350 +GF+ FE E A ++MN L + L + Sbjct: 270 CFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301 Score = 37.4 bits (85), Expect = 0.029 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Frame = +3 Query: 75 KEQRIREKKQAEE----PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 +E+ +R K + E ++ LY+ ++ +++++ F ++G Sbjct: 310 REEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ- 368 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 G S+ +GF+ + NPE A EMN ++ L IAL Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406 Score = 35.4 bits (80), Expect = 0.11 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +3 Query: 240 TGKSKHYGFIEFENPEVAKIVADEMNNYLL 329 TG+SK YGF++FE E A+ D++N L+ Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/83 (21%), Positives = 40/83 (48%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 E++ T L + ++P +++++ F G TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP 117 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +3 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 F FG T K K +GF+ N + A + +N Y L + LQ++ Sbjct: 297 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 351 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +++++ F FG G+SK Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +YI + +++++ F +FG +GKSK +GF+ FE E A+ D Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 309 EMN 317 EMN Sbjct: 250 EMN 252 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLL 329 SK YGF+ FE E A+ ++MN LL Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLL 163
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +++++ F FG G+SK Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Score = 36.6 bits (83), Expect = 0.050 Identities = 24/81 (29%), Positives = 38/81 (46%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSK 254 K Q+ RE + + V YI + +++++ F +FG +GKSK Sbjct: 174 KSQKEREAELGARAKEFTNV-YIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSK 231 Query: 255 HYGFIEFENPEVAKIVADEMN 317 +GF+ FE E A+ DEMN Sbjct: 232 GFGFVSFERHEDAQKAVDEMN 252 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEK 371 SK YGF+ FE E A+ ++MN LL + + + +K Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQK 177
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +++++ F FG G+SK Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Score = 35.8 bits (81), Expect = 0.086 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +YI + +++++ F +FG +GKSK +GF+ FE E A+ D Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 309 EMN 317 EMN Sbjct: 250 EMN 252 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLL 329 SK YGF+ FE E A+ ++MN LL Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLL 163
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +++++ F FG G+SK Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Score = 35.8 bits (81), Expect = 0.086 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +YI + +++++ F +FG +GKSK +GF+ FE E A+ D Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 309 EMN 317 EMN Sbjct: 250 EMN 252 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLL 329 SK YGF+ FE E A+ ++MN LL Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLL 163
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/79 (27%), Positives = 40/79 (50%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 ++IG +P+ E ++Q +F +FG T KSK Y FI F++P +K+ E+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168 Query: 315 NNYLLFEHTLQIALVPPEK 371 + + +I +V E+ Sbjct: 169 GVHRGIQIKDRICIVDIER 187
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/83 (21%), Positives = 37/83 (44%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 +++ T L + ++P +D+ + F G TG+S YGF+ + +P A Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLKLQTKTIKVSYARP 117 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/62 (27%), Positives = 25/62 (40%) Frame = +3 Query: 168 EDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 347 E + F FG T K K +GF+ N + A + +N Y L E LQ Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356 Query: 348 IA 353 ++ Sbjct: 357 VS 358 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +M+ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 174
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/83 (21%), Positives = 37/83 (44%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 +++ T L + ++P +D+ + F G TG+S YGF+ + +P A Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLKLQTKTIKVSYARP 117 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/62 (27%), Positives = 25/62 (40%) Frame = +3 Query: 168 EDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 347 E + F FG T K K +GF+ N + A + +N Y L E LQ Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356 Query: 348 IA 353 ++ Sbjct: 357 VS 358 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +M+ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Frame = +3 Query: 90 REKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFI 269 R K + + T +L I +VP F ++ + + +G TG SK YGF+ Sbjct: 129 RGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 188 Query: 270 EFENPEVA-----KIVADEMNNYLLFEHTLQIALVPPEKVHAK 383 E+ + A +++ ++ LF + + L+ E +H+K Sbjct: 189 EYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSK 231
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 38.5 bits (88), Expect = 0.013 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPENTATV-LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 L G +Q + + AE+P + + L++G++P + G F++ G T Sbjct: 65 LSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLT 124 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVP-PEKVHAKLWKGVRKG 407 G+S+ +GF+ E + + N Y + +++ P P K + G R G Sbjct: 125 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG 180
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 38.5 bits (88), Expect = 0.013 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +++++ F FG G+SK Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Score = 33.9 bits (76), Expect = 0.33 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +YI + +++++ +F Q+G GKS+ +GF+ FE E A+ D Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVD 249 Query: 309 EMN 317 +MN Sbjct: 250 DMN 252 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLL 329 SK YGF+ FE E A+ D+MN LL Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLL 163
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 38.5 bits (88), Expect = 0.013 Identities = 22/86 (25%), Positives = 40/86 (46%) Frame = +3 Query: 30 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXX 209 GP+ G G D + +RI + + L++G++PH E++++ FF FG Sbjct: 306 GPRPGRG-DMEQNDSDNRRIIRYPDSHQ-------LFVGNLPHDIDENELKEFFMSFGNV 357 Query: 210 XXXXXXXXXXTGKSKHYGFIEFENPE 287 GK ++GF+ F++ E Sbjct: 358 VELRINTKGVGGKLPNFGFVVFDDSE 383
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 38.5 bits (88), Expect = 0.013 Identities = 22/86 (25%), Positives = 40/86 (46%) Frame = +3 Query: 30 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXX 209 GP+ G G D + +RI + + L++G++PH E++++ FF FG Sbjct: 306 GPRPGRG-DMEQNDSDNRRIIRYPDSHQ-------LFVGNLPHDIDENELKEFFMSFGNV 357 Query: 210 XXXXXXXXXXTGKSKHYGFIEFENPE 287 GK ++GF+ F++ E Sbjct: 358 VELRINTKGVGGKLPNFGFVVFDDSE 383
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 38.1 bits (87), Expect = 0.017 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 SA P T DG+ +E K RE+ T L++G + E ++ +F+++G Sbjct: 68 SARPHTIDGR---VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYG 124 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEF-ENPEVAKIV 302 +GK + +GF+ F ++ V KIV Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 38.1 bits (87), Expect = 0.017 Identities = 21/74 (28%), Positives = 36/74 (48%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 LY+ ++ G +++++ F FG G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 315 NNYLLFEHTLQIAL 356 N ++ L +AL Sbjct: 354 NGRIVATKPLYVAL 367 Score = 35.4 bits (80), Expect = 0.11 Identities = 24/81 (29%), Positives = 39/81 (48%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSK 254 KE+ +A+E N +YI + +++++ F +FG +GKSK Sbjct: 177 KEREAELGARAKEFPN----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSK 231 Query: 255 HYGFIEFENPEVAKIVADEMN 317 +GF+ FE E A+ DEMN Sbjct: 232 GFGFVSFERHEDAQKAVDEMN 252
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 38.1 bits (87), Expect = 0.017 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 8/154 (5%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 E + E+ + EP A L++G++ + + F+Q G T +S+ Sbjct: 134 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPE--------KVHAKLWKGVRKGFI 413 +GF+ + + A+ ++ N Y L L + P +V+ ++ V G + Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR-VYVGNL 251 Query: 414 PVDRVAIERNRLSKDKTVEEHKKMVEGIVKRDEK 515 P D ++ RL ++ EH K+VE V D + Sbjct: 252 PWD---VDNGRL--EQLFSEHGKVVEARVVYDRE 280
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +++++ F FG G+SK Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +YI + +++++ F ++G GKSK +GF+ FE E A+ D Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVD 249 Query: 309 EMN 317 EMN Sbjct: 250 EMN 252 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLL 329 SK YGF+ FE E A+ D+MN LL Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLL 163
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 38.1 bits (87), Expect = 0.017 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +++G +P YED++ F++ G +G+++ Y FI F E A+ Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224 Query: 309 EMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKMV 488 ++Y + P K H + V + V +I +N+ +K+ +EE K+ Sbjct: 225 LCDSY----------EIRPGK-HLGVCISVANNRLFVG--SIPKNK-TKENILEEFSKVT 270 Query: 489 EGIV------KRDEKRRKR 527 EG+V + D+K++ R Sbjct: 271 EGLVDVILYHQPDDKKKNR 289 Score = 30.8 bits (68), Expect = 2.8 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 VL++ ++ E+ ++ F +FG K K Y F+ FE+ A DE Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDE 393 Query: 312 MNNYLLFEHTLQIALV-PPEK 371 MN + ++I L PP+K Sbjct: 394 MNGKEIEGEEIEIVLAKPPDK 414
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 38.1 bits (87), Expect = 0.017 Identities = 14/62 (22%), Positives = 32/62 (51%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 LY+G++P D+++ ++ G +G+S+ +GF+ + E A V +++ Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145 Query: 315 NN 320 N+ Sbjct: 146 ND 147 Score = 37.4 bits (85), Expect = 0.029 Identities = 22/89 (24%), Positives = 40/89 (44%) Frame = +3 Query: 63 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 PLEG + + + ++ E+ V YIG++ + ++ FF + G T Sbjct: 163 PLEGMDIATTQAEDSQFVESPYKV-YIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGT 221 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLL 329 KS +GF+ F + E + +NN +L Sbjct: 222 SKSNGFGFVSFSSEEEVEAAIQALNNSVL 250
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 38.1 bits (87), Expect = 0.017 Identities = 21/83 (25%), Positives = 39/83 (46%) Frame = +3 Query: 33 PKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXX 212 P DGK +E K R ++++ E + L++G + E+ ++ +F QFG Sbjct: 94 PHIIDGKT---VEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150 Query: 213 XXXXXXXXXTGKSKHYGFIEFEN 281 TGK + + F+EF++ Sbjct: 151 SVKLLTDKTTGKRRGFAFVEFDD 173
>ABT1_HUMAN (Q9ULW3) Activator of basal transcription 1 (hABT1) (Basal| transcriptional activator) Length = 272 Score = 37.7 bits (86), Expect = 0.023 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 27/113 (23%) Frame = +3 Query: 63 PLEGKEQRIREKKQAEEPENTAT---------VLYIGHVPHGFYEDQMQGFFQQFGXXXX 215 PLEG EQ + +++ EE E A ++Y+GH+P F ++ +G Sbjct: 15 PLEGTEQTLDAEEEQEESEEAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYGEVGR 74 Query: 216 XXX------------XXXXXTGKSKHY------GFIEFENPEVAKIVADEMNN 320 GK + Y G++EF + +AK VA ++N Sbjct: 75 VFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKRVAASLHN 127
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 37.7 bits (86), Expect = 0.023 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G++P Q+ F+ G TG+S+ +GF+ + + A + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 315 NNYLLFEHTLQI-ALVPPEKVHAKLWKGVRKGF 410 N Y L L++ A PP K +G R F Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSF 185
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 37.7 bits (86), Expect = 0.023 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 7/144 (4%) Frame = +3 Query: 105 AEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENP 284 +E PE L++G++P+ +++ G F G T +S+ +GF+ Sbjct: 49 SEPPEEAK--LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTV 106 Query: 285 EVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKG-------VRKGFIPVDRVAIERN 443 E A+ + +N Y + L + P + +G V G +P D ++ + Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWD---VDTS 163 Query: 444 RLSKDKTVEEHKKMVEGIVKRDEK 515 RL ++ EH K+V V D + Sbjct: 164 RL--EQLFSEHGKVVSARVVSDRE 185
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 37.7 bits (86), Expect = 0.023 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 + R+RE++ + + + T +L + ++P + Q + + FG TG SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174 Query: 258 YGFIEF-ENPEVAKIVADEMNNYL----LFEHTLQIALVPPEKVHAK 383 YGF E+ + A+ +D + L L+ H + P +H++ Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSR 221
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 37.7 bits (86), Expect = 0.023 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 + R+RE++ + + + T +L + ++P + Q + + FG TG SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174 Query: 258 YGFIEF-ENPEVAKIVADEMNNYL----LFEHTLQIALVPPEKVHAK 383 YGF E+ + A+ +D + L L+ H + P +H++ Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSR 221
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 37.7 bits (86), Expect = 0.023 Identities = 29/129 (22%), Positives = 57/129 (44%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 P ++IG +P +ED++ ++ G G ++ Y F+ F N + A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEA 109 Query: 294 KIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEE 473 K ++NNY + T ++ V + +L+ +G IP + +++ + E Sbjct: 110 KNAIKQLNNYEI--RTGRLLGVCASVDNCRLF----RGGIPKTK--------KREEILSE 155 Query: 474 HKKMVEGIV 500 KK+ EG+V Sbjct: 156 MKKVTEGVV 164
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 V+Y+G +P+ E+Q+ G TG+SK Y FIEF + E + Sbjct: 19 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 78 Query: 312 MNNYLL 329 +N Y L Sbjct: 79 LNGYQL 84
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 37.7 bits (86), Expect = 0.023 Identities = 23/93 (24%), Positives = 41/93 (44%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +D+++ F +G G SK Sbjct: 277 KRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367 Score = 30.0 bits (66), Expect = 4.7 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T +YI + + +++ F FG TG+S+ +GF+ + N E A+ Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVS 249 Query: 309 EMN 317 EMN Sbjct: 250 EMN 252
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 37.7 bits (86), Expect = 0.023 Identities = 23/93 (24%), Positives = 41/93 (44%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +D+++ F +G G SK Sbjct: 277 KRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.7 bits (86), Expect = 0.023 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Frame = +3 Query: 21 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDQMQGFFQ 194 ++A P DG+ P +R + + PE ATV L++G + E+ ++ +F+ Sbjct: 75 QNARPHKVDGRVVEP-----KRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFK 129 Query: 195 QFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEH 338 Q+G T K + + F+EF++ + + N+ + +H Sbjct: 130 QYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKH 177 Score = 30.0 bits (66), Expect = 4.7 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 7/155 (4%) Frame = +3 Query: 111 EPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEV 290 EPE+ L+IG + + ++ ++ F+Q+G T +S+ +GFI + Sbjct: 12 EPEHVRK-LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSR--- 67 Query: 291 AKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKG-------VRKGFIPVDRVAIERNRL 449 A +V D N H + +V P++ + G V+K F+ + +E N L Sbjct: 68 AHMVDDAQN---ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDL 124 Query: 450 SKDKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDYE 554 +++ +V + D++ RK+ A ++++ Sbjct: 125 R--DYFKQYGTVVSAAIVVDKETRKKRGFAFVEFD 157
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 37.4 bits (85), Expect = 0.029 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 + + PEN V + V ++ +Q F +FG TG S Y FIEFEN Sbjct: 242 EVKPPENVLFVCKLNPVTQ---DEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFEN 298 Query: 282 PEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGV-------RKGFIPVDRVAIER 440 + + +M L+ +H + + ++ W+ R GF V + +R Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHVDFSQSVSKLSESWRNATISKRSQRGGFGGVAELEKKR 358 Query: 441 NRLSKDKTVEE 473 + D E+ Sbjct: 359 QYRATDNVREQ 369
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 37.4 bits (85), Expect = 0.029 Identities = 17/83 (20%), Positives = 39/83 (46%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 +++ T L + ++P +++ + F G TG+S YGF+ + +P+ A+ Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 107 KAINTLNGLRLQTKTIKVSYARP 129 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/62 (25%), Positives = 25/62 (40%) Frame = +3 Query: 168 EDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 347 E + F FG T K K +GF+ N + A + +N Y L + LQ Sbjct: 315 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 374 Query: 348 IA 353 ++ Sbjct: 375 VS 376 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 37.4 bits (85), Expect = 0.029 Identities = 17/83 (20%), Positives = 39/83 (46%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 +++ T L + ++P +++ + F G TG+S YGF+ + +P+ A+ Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP 117 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/62 (25%), Positives = 25/62 (40%) Frame = +3 Query: 168 EDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 347 E + F FG T K K +GF+ N + A + +N Y L + LQ Sbjct: 303 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 362 Query: 348 IA 353 ++ Sbjct: 363 VS 364 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 37.4 bits (85), Expect = 0.029 Identities = 17/83 (20%), Positives = 39/83 (46%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 +++ T L + ++P +++ + F G TG+S YGF+ + +P+ A+ Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 102 KAINTLNGLRLQTKTIKVSYARP 124 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/62 (25%), Positives = 25/62 (40%) Frame = +3 Query: 168 EDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 347 E + F FG T K K +GF+ N + A + +N Y L + LQ Sbjct: 310 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 369 Query: 348 IA 353 ++ Sbjct: 370 VS 371 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
>YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 intergenic| region Length = 203 Score = 37.0 bits (84), Expect = 0.038 Identities = 25/128 (19%), Positives = 52/128 (40%) Frame = +3 Query: 3 RRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQ 182 RR R GP+ G K++ RE+++ P+ + I +P + + Sbjct: 26 RRRDLRNELGPRLGFAPSDAASRSKDRLYREREEPPLPKR----IRISKIPLDVSDYTLD 81 Query: 183 GFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVP 362 ++FG K EFE+PEV + + + N + L +++ + Sbjct: 82 DMIKEFGSPIFSKIFD----NKEDRTCIYEFEDPEVLEKIVERYNGHELHNAKIEVEIYQ 137 Query: 363 PEKVHAKL 386 P++ H+++ Sbjct: 138 PQRKHSRM 145
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 37.0 bits (84), Expect = 0.038 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Frame = +3 Query: 21 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDQMQGFFQ 194 ++A P DG+ P +R +++ + P ATV L++G + E+ ++ +F+ Sbjct: 82 QNARPHKIDGRTVEP-----KRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFK 136 Query: 195 QFGXXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADEMNN 320 FG TGK + + FIEF++ + V KI+ + ++ Sbjct: 137 DFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHS 179
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 37.0 bits (84), Expect = 0.038 Identities = 18/83 (21%), Positives = 39/83 (46%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 E++ T L ++P +++++ F G TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 297 IVADEMNNYLLFEHTLQIALVPP 365 + +N L T++++ P Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP 117 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +3 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 F FG T K K +GF+ N + A + +N Y L + LQ++ Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 LY+ +P + +++ F Q+G TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 37.0 bits (84), Expect = 0.038 Identities = 23/93 (24%), Positives = 41/93 (44%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LY+ ++ G +D+++ F +G G SK Sbjct: 277 KRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 36.6 bits (83), Expect = 0.050 Identities = 30/127 (23%), Positives = 49/127 (38%) Frame = +3 Query: 126 ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVA 305 +T LYIG + G E ++ F F TG+S+ YGF+ F + + A Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 MN L + + + AK W + LS D+++EE +K Sbjct: 90 SAMNGQELNGFNISVNV-------AKDWPSL---------------PLSLDESIEEAEKK 127 Query: 486 VEGIVKR 506 ++ R Sbjct: 128 ENKMMSR 134
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 36.6 bits (83), Expect = 0.050 Identities = 22/93 (23%), Positives = 38/93 (40%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 N +Y+G + E + F FG + + + + FIE+E E A Sbjct: 3 NDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAA 62 Query: 300 VADEMNNYLLFEHTLQIALVPPEKVHAKLWKGV 398 D MN+ L T+++ L P +V +K + Sbjct: 63 AIDNMNDSELCGRTIRVNLAKPVRVKEDSFKPI 95
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 36.6 bits (83), Expect = 0.050 Identities = 19/103 (18%), Positives = 47/103 (45%) Frame = +3 Query: 63 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 P + + + +E++ + + ++IG + ED ++ +F ++G T Sbjct: 137 PPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT 196 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEK 371 G+S+ +GF+ FE P ++ + +H L ++ P++ Sbjct: 197 GRSRGFGFLSFEKP-------SSVDEVVKTQHILDGKVIDPKR 232 Score = 31.2 bits (69), Expect = 2.1 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTG 245 L+GK + +E + T + ++G + + + FF Q+G TG Sbjct: 223 LDGKVIDPKRAIPRDEQDKTGKI-FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 281 Query: 246 KSKHYGFIEFENPEVAKIVADEMNNYLLF-EHTLQIALVPPEKVHAK 383 +S+ +GF+ +++ + V N ++ F + ++I P + K Sbjct: 282 QSRGFGFVTYDSADAVDRVC--QNKFIDFKDRKIEIKRAEPRHMQQK 326
>ABT1_PONPY (Q5R9Y3) Activator of basal transcription 1| Length = 272 Score = 36.6 bits (83), Expect = 0.050 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Frame = +3 Query: 63 PLEGKEQRIREKKQAEEPENTAT---------VLYIGHVPHGFYEDQMQGFFQQFGXXXX 215 PL+G EQ + +++ EE E+ A ++Y+GH+P F ++ +G Sbjct: 15 PLKGTEQTLDAEEEQEESEDAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYGEVGR 74 Query: 216 XXX------------XXXXXTGKSKHY------GFIEFENPEVAKIVADEMNN 320 GK + Y G++EF + +AK VA ++N Sbjct: 75 VFFQAEDRFVRRKKKAAAAAGGKKRSYSKDYTEGWVEFRDKRIAKRVAASLHN 127
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 36.6 bits (83), Expect = 0.050 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 17/111 (15%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFY-----------------EDQMQGFFQQ 197 E E +++ +K+ E T+ IG +P ++ ++ F + Sbjct: 207 ETSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSR 266 Query: 198 FGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 350 FG TG S Y FIEF+N E + +M N L+ + + + Sbjct: 267 FGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 36.6 bits (83), Expect = 0.050 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++P + F++ G TG+S+ +GF+ + E + + Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 315 NNYLLFEHTLQI-ALVPPEKVHAKLWKGVRKG 407 N Y L L++ + PPEK ++G +G Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRG 180 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 14/99 (14%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPENTA--------------TVLYIGHVPHGFYEDQMQGFFQQFG 203 L+G+ R+ E+ EN++ +Y+G++ G +D ++ F + G Sbjct: 153 LDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQG 212 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNN 320 +G+S+ +GF+ + + A+E+NN Sbjct: 213 KVVDAKVVYDRDSGRSRGFGFVTYSS-------AEEVNN 244
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 36.6 bits (83), Expect = 0.050 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P DG+ +E K RE T +++G + ED ++ +F+Q+G Sbjct: 73 TARPHKVDGR---VVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYG 129 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADE---MNNY 323 +GK + + F+ FE+ + V KIV + +NN+ Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNH 173
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 36.2 bits (82), Expect = 0.066 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = +3 Query: 72 GKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKS 251 G++ I ++ P++ L+IG++PH + +++ FFQ +G GK Sbjct: 323 GEQGDIEPRRMVRHPDSHQ--LFIGNLPHEVDKSELKDFFQSYGNVVELRINSG---GKL 377 Query: 252 KHYGFIEFENPE-VAKIVAD 308 ++GF+ F++ E V K++++ Sbjct: 378 PNFGFVVFDDSEPVQKVLSN 397
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 36.2 bits (82), Expect = 0.066 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 + T +++G +P +ED++ F++ G TG ++ Y F+ F E A+ Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Query: 300 VADEMNNYLL--FEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEE 473 NN+ + +H V ++ G IP + +K++ +EE Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFV--------GSIPKSK--------TKEQILEE 262 Query: 474 HKKMVEGIV------KRDEKRRKR 527 K+ EG+ + D+K++ R Sbjct: 263 FSKVTEGLTDVILYHQPDDKKKNR 286 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/91 (25%), Positives = 37/91 (40%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 VL++ ++ + E+ ++ F QFG K K Y FI F+ + A +E Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 390 Query: 312 MNNYLLFEHTLQIALVPPEKVHAKLWKGVRK 404 MN L ++I P K K R+ Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQ 421
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 36.2 bits (82), Expect = 0.066 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 + T +++G +P +ED++ F++ G TG ++ Y F+ F E A+ Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Query: 300 VADEMNNYLL--FEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEE 473 NN+ + +H V ++ G IP + +K++ +EE Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFV--------GSIPKSK--------TKEQILEE 262 Query: 474 HKKMVEGIV------KRDEKRRKR 527 K+ EG+ + D+K++ R Sbjct: 263 FSKVTEGLTDVILYHQPDDKKKNR 286 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/91 (25%), Positives = 37/91 (40%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 VL++ ++ + E+ ++ F QFG K K Y FI F+ + A +E Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 390 Query: 312 MNNYLLFEHTLQIALVPPEKVHAKLWKGVRK 404 MN L ++I P K K R+ Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQ 421
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 36.2 bits (82), Expect = 0.066 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Frame = +3 Query: 72 GKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKS 251 G+ + ++ P++ L+IG++PH + +++ FFQ FG GK Sbjct: 321 GEPGDVEPRRMVRHPDSHQ--LFIGNLPHEVDKSELKDFFQNFGNVVELRINSG---GKL 375 Query: 252 KHYGFIEFENPE-VAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKG 407 ++GF+ F++ E V K+++ N ++F +++ V K + R+G Sbjct: 376 PNFGFVVFDDSEPVQKVLS---NRPIMFRGAVRL------NVEEKKTRAAREG 419
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 36.2 bits (82), Expect = 0.066 Identities = 25/102 (24%), Positives = 44/102 (43%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 E +R + K + + L+I ++ +++++ F FG GK Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GK 402 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKV 374 SK +GF+ + PE A EMN +L L +AL ++V Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV 444 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/79 (24%), Positives = 33/79 (41%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 R + + E + T +YI ++ E + F QFG K + +G Sbjct: 246 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFG 304 Query: 264 FIEFENPEVAKIVADEMNN 320 F+ + N E A+ DE+N+ Sbjct: 305 FVNYANHECAQKAVDELND 323 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/69 (24%), Positives = 27/69 (39%) Frame = +3 Query: 123 TATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIV 302 T+ LY+G + E + F G T +S Y ++ F N E + Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137 Query: 303 ADEMNNYLL 329 DE+N L+ Sbjct: 138 LDELNYTLI 146
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 36.2 bits (82), Expect = 0.066 Identities = 23/93 (24%), Positives = 41/93 (44%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 +++ + KQ LYI ++ +++++ F FG G+SK Sbjct: 277 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKG 334 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +GF+ F +PE A EMN ++ L +AL Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367 Score = 33.9 bits (76), Expect = 0.33 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 2/153 (1%) Frame = +3 Query: 90 REKKQAE--EPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 R++++AE T +YI + ++ ++ F QFG GKSK +G Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFG 234 Query: 264 FIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERN 443 F+ +E E A +EMN E + +I V + + +++ F +++ Sbjct: 235 FVSYEKHEDANKAVEEMNGK---EISGKIIFVGRAQKKVERQAELKRKF-----EQLKQE 286 Query: 444 RLSKDKTVEEHKKMVEGIVKRDEKRRKRIKAAG 542 R+S+ + V + K ++ + DEK RK G Sbjct: 287 RISRYQGVNLYIKNLDDTID-DEKLRKEFSPFG 318
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 36.2 bits (82), Expect = 0.066 Identities = 16/69 (23%), Positives = 33/69 (47%) Frame = +3 Query: 111 EPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEV 290 + + T T +++G +P+ + ++ +F+ FG TGKS+ YGF+ + Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64 Query: 291 AKIVADEMN 317 A+ + N Sbjct: 65 AERACKDPN 73
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 36.2 bits (82), Expect = 0.066 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 + T +++G +P +ED++ F++ G TG ++ Y F+ F E A+ Sbjct: 69 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 128 Query: 300 VADEMNNYLL--FEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEE 473 NN+ + +H V ++ G IP + +K++ +EE Sbjct: 129 AVKLYNNHEIRSGKHIGVCISVANNRLFV--------GSIPKSK--------TKEQILEE 172 Query: 474 HKKMVEGIV------KRDEKRRKR 527 K+ EG+ + D+K++ R Sbjct: 173 FSKVTEGLTDVILYHQPDDKKKNR 196 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/91 (25%), Positives = 37/91 (40%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 VL++ ++ + E+ ++ F QFG K K Y FI F+ + A +E Sbjct: 249 VLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 300 Query: 312 MNNYLLFEHTLQIALVPPEKVHAKLWKGVRK 404 MN L ++I P K K R+ Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQ 331
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 36.2 bits (82), Expect = 0.066 Identities = 18/71 (25%), Positives = 34/71 (47%) Frame = +3 Query: 138 YIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 ++G + + +++ F QFG TG+S+ +GF+ F++ + K DEMN Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 318 NYLLFEHTLQI 350 L T+ + Sbjct: 69 GKELDGRTITV 79
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 35.8 bits (81), Expect = 0.086 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 EG +A + ++IG + + ++ +F +FG TG+ Sbjct: 77 EGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHA-KLWKGVRKGFI 413 S+ +GF+ F+ E V D+ EH L ++ P++ A K + V+K F+ Sbjct: 137 SRGFGFVLFKESESVDKVMDQK------EHKLNGKVIDPKRAKAMKTKEPVKKIFV 186
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 35.8 bits (81), Expect = 0.086 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P + DG+ +E K RE+ T L++G + E ++ +F+++G Sbjct: 68 AARPHSIDGR---VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 124 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + +GF+ F++ + V KIV Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 35.8 bits (81), Expect = 0.086 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P + DG+ +E K RE+ T L++G + E ++ +F+++G Sbjct: 80 AARPHSIDGR---VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 136 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + +GF+ F++ + V KIV Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 30.4 bits (67), Expect = 3.6 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Frame = +3 Query: 60 LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXX 239 +PLE K+ REK+Q + L+IG + E+ ++ +++Q+G Sbjct: 8 VPLERKK---REKEQFRK-------LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA 57 Query: 240 TGKSKHYGFIEFEN-PEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIP 416 + +S+ +GF+ F + EV +A H++ +V P++ A+ G + Sbjct: 58 SKRSRGFGFVTFSSMAEVDAAMAAR-------PHSIDGRVVEPKRAVAREESGKPGAHVT 110 Query: 417 VDRVAIERNRLSKDKTVEEH 476 V ++ + K+ T E H Sbjct: 111 VKKLFVGG---IKEDTEEHH 127
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 35.8 bits (81), Expect = 0.086 Identities = 19/74 (25%), Positives = 32/74 (43%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T LY+G + + Q+ F Q G T +S YG++ F NP+ A Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95 Query: 309 EMNNYLLFEHTLQI 350 E+N L+ +++ Sbjct: 96 ELNYIPLYGKPIRV 109 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/78 (21%), Positives = 37/78 (47%) Frame = +3 Query: 90 REKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFI 269 R+++ + + T +Y+ ++ +D ++ F ++G GKSK +GF+ Sbjct: 202 RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFV 260 Query: 270 EFENPEVAKIVADEMNNY 323 FEN + A + +N + Sbjct: 261 NFENADDAARAVESLNGH 278 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/93 (21%), Positives = 39/93 (41%) Frame = +3 Query: 78 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKH 257 EQ ++E + N LY+ ++ +++++ F FG G SK Sbjct: 305 EQNLKEAADKFQSSN----LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKG 359 Query: 258 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 GF+ F PE A +++ ++ L +A+ Sbjct: 360 SGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 35.4 bits (80), Expect = 0.11 Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +YIG++ E + F ++G TG+S+ + ++++E+ + D + Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 315 NNYLLFEHTLQI--ALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSK 455 N + + L+I P++ K ++ V++ +DR + +N K Sbjct: 93 NGFKIGGRALKIDHTFYRPKRSLQKYYEAVKE---ELDRDIVSKNNAEK 138
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 35.4 bits (80), Expect = 0.11 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 EG +A + ++IG + + ++ +F +FG TG+ Sbjct: 77 EGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHA-KLWKGVRKGFI 413 S+ +GF+ F+ E V D+ EH L ++ P++ A K + V+K F+ Sbjct: 137 SRGFGFVLFKESESVDKVMDQK------EHKLNGKVIDPKRAKAMKTKEPVKKIFV 186
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Frame = +3 Query: 33 PKTGDGKDFLP-------LEGKEQRIRE--KKQAEEPENTATVLYIGHVPHGFYEDQMQG 185 P T DG++ P ++ + R +E +K + + +++G +PH E +++ Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131 Query: 186 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPE 287 +F++FG + + +GFI FE+ + Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165 Score = 31.2 bits (69), Expect = 2.1 Identities = 11/50 (22%), Positives = 27/50 (54%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENP 284 L++G + ++ ++ +F Q+G T +S+ +GF++F++P Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Frame = +3 Query: 33 PKTGDGKDFLP-------LEGKEQRIRE--KKQAEEPENTATVLYIGHVPHGFYEDQMQG 185 P T DG++ P ++ + R +E +K + + +++G +PH E +++ Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131 Query: 186 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPE 287 +F++FG + + +GFI FE+ + Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165 Score = 31.2 bits (69), Expect = 2.1 Identities = 11/50 (22%), Positives = 27/50 (54%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENP 284 L++G + ++ ++ +F Q+G T +S+ +GF++F++P Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 35.4 bits (80), Expect = 0.11 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPE-NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 L GK R+ +A + N +++ ++P +Q F++FG Sbjct: 90 LNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED- 148 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA-------LVPPEKVHAKLW 389 GKS+ YGF++FE + A +N+ ++ + + + V PE+ + L+ Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLY 204 Score = 34.7 bits (78), Expect = 0.19 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Frame = +3 Query: 75 KEQRIRE--KKQAEEPENTATV--LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 +EQ +RE K++ EE + A V +Y+ +V E++++ F Q G Sbjct: 282 REQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK- 340 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 GKSK +GF+ F PE A + + L +A+ Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378 Score = 33.5 bits (75), Expect = 0.43 Identities = 20/78 (25%), Positives = 35/78 (44%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 + +K +PE T LY+ ++ ED ++ F +FG + Y Sbjct: 186 KFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYA 244 Query: 264 FIEFENPEVAKIVADEMN 317 F+ F+NPE A+ A+ +N Sbjct: 245 FVNFDNPEDARRAAETVN 262 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/65 (24%), Positives = 28/65 (43%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 LY+G + E + F +F +G+S YG+ F + + A + ++ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 315 NNYLL 329 NN LL Sbjct: 86 NNSLL 90
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 35.4 bits (80), Expect = 0.11 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 EG +A + ++IG + + ++ +F +FG TG+ Sbjct: 75 EGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHA-KLWKGVRKGFI 413 S+ +GF+ F+ E V D+ EH L ++ P++ A K + V+K F+ Sbjct: 135 SRGFGFVLFKESESVDKVMDQK------EHKLNGKVIDPKRAKAMKTKEPVKKIFV 184
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/70 (24%), Positives = 31/70 (44%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 P ++IG +P +ED++ ++ G G ++ Y F+ F N + A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEA 109 Query: 294 KIVADEMNNY 323 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 35.4 bits (80), Expect = 0.11 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Frame = +3 Query: 81 QRIREKKQAEEPENTATV--LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSK 254 +R ++ + P ATV L++G + E ++ +FQ FG TGK + Sbjct: 104 KRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKR 163 Query: 255 HYGFIEFENPE-VAKIVADEMN 317 + F+EF++ + V K+V + + Sbjct: 164 GFAFVEFDDYDPVDKVVLQKQH 185
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F FG T +S+ +GFI F NPE A + M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 35.0 bits (79), Expect = 0.15 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG + E ++ F ++G T KS+ + F+ FE+P AK VA +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 315 N 317 N Sbjct: 70 N 70
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/66 (25%), Positives = 29/66 (43%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T LY+ ++P +DQ+ F ++G TGK + F+ F E A+ Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255 Query: 309 EMNNYL 326 +NN + Sbjct: 256 ALNNVI 261
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 35.0 bits (79), Expect = 0.15 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = +3 Query: 36 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXX 215 KT D K P + + + K+ +++G + + ++ +F+QFG Sbjct: 89 KTIDPKVAFPRRAQPKMVTRTKK----------IFVGGLSANTVVEDVKQYFEQFGKVED 138 Query: 216 XXXXXXXXTGKSKHYGFIEFENPEVAKIVAD----EMNNYLL 329 T + + +GF+ FEN +V + V + E+NN ++ Sbjct: 139 AMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180 Score = 32.0 bits (71), Expect = 1.2 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 1/137 (0%) Frame = +3 Query: 105 AEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENP 284 A + ++ ++IG + D ++ +F +FG T +S+ +GF+ F +P Sbjct: 13 ANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP 72 Query: 285 -EVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDK 461 V K++ ++ L T+ + P + K+ +K F+ LS + Sbjct: 73 ASVDKVLGQP--HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFV---------GGLSANT 121 Query: 462 TVEEHKKMVEGIVKRDE 512 VE+ K+ E K ++ Sbjct: 122 VVEDVKQYFEQFGKVED 138
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 35.0 bits (79), Expect = 0.15 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = +3 Query: 36 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXX 215 KT D K P + + + K+ +++G + + ++ +F+QFG Sbjct: 89 KTIDPKVAFPRRAQPKMVTRTKK----------IFVGGLSANTVVEDVKQYFEQFGKVED 138 Query: 216 XXXXXXXXTGKSKHYGFIEFENPEVAKIVAD----EMNNYLL 329 T + + +GF+ FEN +V + V + E+NN ++ Sbjct: 139 AMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180 Score = 32.0 bits (71), Expect = 1.2 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 1/137 (0%) Frame = +3 Query: 105 AEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENP 284 A + ++ ++IG + D ++ +F +FG T +S+ +GF+ F +P Sbjct: 13 ANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP 72 Query: 285 -EVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDK 461 V K++ ++ L T+ + P + K+ +K F+ LS + Sbjct: 73 ASVDKVLGQP--HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFV---------GGLSANT 121 Query: 462 TVEEHKKMVEGIVKRDE 512 VE+ K+ E K ++ Sbjct: 122 VVEDVKQYFEQFGKVED 138
>CYAA_BACAN (P40136) Calmodulin-sensitive adenylate cyclase precursor (EC| 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase) (Edema factor) (EF) (Anthrax edema toxin adenylate cyclase component) Length = 800 Score = 35.0 bits (79), Expect = 0.15 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 20/110 (18%) Frame = +3 Query: 276 ENPEVAKIVADEMNNYLLFEHTLQIA--------LVPPEKVHAKL--WKGVRKGFIPVD- 422 E+ + K +A E+N Y+LF ++A VH K W G G+IP D Sbjct: 310 EHADAFKKIARELNTYILFRPVNKLATNLIKSGVATKGLNVHGKSSDW-GPVAGYIPFDQ 368 Query: 423 --------RVAIERNRLSKDKTVEEHKKMVEGI-VKRDEKRRKRIKAAGI 545 ++A+E+ L K++ EH+ + I +K D R + +K GI Sbjct: 369 DLSKKHGQQLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGI 418
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 35.0 bits (79), Expect = 0.15 Identities = 16/67 (23%), Positives = 31/67 (46%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 + T T +++G +P+ + ++ +F+ FG TGKS+ YGF+ + A Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87 Query: 297 IVADEMN 317 + N Sbjct: 88 RACKDPN 94
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 34.7 bits (78), Expect = 0.19 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P DG+ +E K RE Q T +++G + E ++ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + + F+ F++ + V KIV Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 34.7 bits (78), Expect = 0.19 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P DG+ +E K RE Q T +++G + E ++ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + + F+ F++ + V KIV Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/66 (24%), Positives = 30/66 (45%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T LY+ ++P +D+++ F ++G TGK + F+ F E A+ Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230 Query: 309 EMNNYL 326 +NN + Sbjct: 231 ALNNVI 236
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 34.7 bits (78), Expect = 0.19 Identities = 18/77 (23%), Positives = 36/77 (46%) Frame = +3 Query: 93 EKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 272 E+++ +EP A L++G++P+ + + F+Q G T +S+ +GF+ Sbjct: 125 EEEEFQEPPEDAK-LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVT 183 Query: 273 FENPEVAKIVADEMNNY 323 E A+ + N Y Sbjct: 184 MSTVEEAEKAVEMYNRY 200 Score = 32.7 bits (73), Expect = 0.73 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = +3 Query: 90 REKKQAEEPENT---ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHY 260 R ++ E P T + +Y+G++P G + +++ F + G TG+S+ + Sbjct: 214 RRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGF 273 Query: 261 GFI 269 GF+ Sbjct: 274 GFV 276
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 34.7 bits (78), Expect = 0.19 Identities = 21/94 (22%), Positives = 41/94 (43%) Frame = +3 Query: 30 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXX 209 GP T DG+ P + +++ K+ + +++G +P E ++ FF ++G Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYK-----VFLGGLPSNVTETDLRTFFNRYGKV 122 Query: 210 XXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 KS+ +GF+ FE + V +E Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 34.7 bits (78), Expect = 0.19 Identities = 17/94 (18%), Positives = 39/94 (41%) Frame = +3 Query: 36 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXX 215 KT + + L ++ +++ +++ EN++ LY+G + E + F G Sbjct: 6 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 65 Query: 216 XXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 T S Y ++ F + E + +++N Sbjct: 66 IRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLN 99 Score = 33.5 bits (75), Expect = 0.43 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Frame = +3 Query: 27 AGPKTGDGKDFLPLEGKEQRIR-EKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 AG K + ++ P++G+ RI ++ + + ++I ++ + F FG Sbjct: 90 AGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 149 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 GKSK +GF+ FE AK D +N LL + +A Sbjct: 150 DILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 198 Score = 33.1 bits (74), Expect = 0.56 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 R Q EE + T LY+ ++ ++Q Q F +FG GK K +G Sbjct: 203 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG-PIVSASLEKDADGKLKGFG 261 Query: 264 FIEFENPEVAKIVADEMNN 320 F+ +E E A + +N+ Sbjct: 262 FVNYEKHEDAVKAVEALND 280 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/80 (22%), Positives = 35/80 (43%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++ ++ +++++ F +G GKSK +GF+ F PE A E Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEK 381 Query: 315 NNYLLFEHTLQIALVPPEKV 374 N ++ L +A+ + V Sbjct: 382 NQQIVAGKPLYVAIAQRKDV 401
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 34.7 bits (78), Expect = 0.19 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P DG+ +E K RE Q T +++G + E ++ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + + F+ F++ + V KIV Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 34.7 bits (78), Expect = 0.19 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P DG+ +E K RE Q T +++G + E ++ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + + F+ F++ + V KIV Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 34.7 bits (78), Expect = 0.19 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 +YI ++P EDQ+ + FG G SK + F EF+NP A++ Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 34.7 bits (78), Expect = 0.19 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Frame = +3 Query: 105 AEEPENTATV-LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 AE+P + + L++G++P + G F++ G +G+S+ +GF+ Sbjct: 79 AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMST 138 Query: 282 PEVAKIVADEMNNYLLFEHTLQIALVP-PEKVHAKLWKGVRKG 407 E + + N Y + +++ P P K + G R G Sbjct: 139 KEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG 181
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 34.7 bits (78), Expect = 0.19 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPEN-----TATVLYIGHVPHGFYEDQMQGF 188 S P T +G L EG Q ++ Q + EN T L++ ++P F + ++ Sbjct: 83 SNSPSTQNGS--LTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQM 140 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 350 F QFG SK +GF+ FEN A ++++ ++ +++ Sbjct: 141 FGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 192
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 34.7 bits (78), Expect = 0.19 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G +P+ E + F Q+G TGKSK + F+ +E+ + D Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 315 NNYLLFEHTLQIALV-----PPEKVHA-KLWKGVRKGFIPVDRVAIERNRLSKD---KTV 467 N + T+++ V P E + + +++ V +S+D K Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEKGCGVKTPPSSPPEVSEDEDAKLT 157 Query: 468 EEHKKMVEGIVKRDEKRRKRIKAAG 542 ++HKK K+++K+RK+ K G Sbjct: 158 KKHKK-----DKKEKKKRKKEKTEG 177
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 34.3 bits (77), Expect = 0.25 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Frame = +3 Query: 72 GKEQRIREKKQAEEPENT-ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 GK + E+++ EE E+ L+I ++ E+ ++G F + G Sbjct: 702 GKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAG 761 Query: 249 ---SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 S +GF+E++ PE A+ ++ + + H L++ + Sbjct: 762 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 800
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 34.3 bits (77), Expect = 0.25 Identities = 29/140 (20%), Positives = 56/140 (40%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHY 260 ++ +++ Q E + L + ++ + E+ +Q F++ G+ K Y Sbjct: 445 EKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPKGY 500 Query: 261 GFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIER 440 F+EF E AK + NN + +++ P + R GF + R Sbjct: 501 AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNM--NARGGFNQQSKTLFVR 558 Query: 441 NRLSKDKTVEEHKKMVEGIV 500 LS+D T E ++ EG + Sbjct: 559 G-LSEDTTEETLRESFEGSI 577 Score = 30.8 bits (68), Expect = 2.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 240 TGKSKHYGFIEFENPEVAKIVADEMNN 320 TG SK +GF++F +PE AK + M + Sbjct: 587 TGSSKGFGFVDFSSPEDAKAAKEAMED 613
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 34.3 bits (77), Expect = 0.25 Identities = 21/92 (22%), Positives = 39/92 (42%) Frame = +3 Query: 90 REKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFI 269 R+ + ENT V ++P ED+++ F + G TG K + F+ Sbjct: 166 RQIDRNRSDENTCRVT---NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFV 222 Query: 270 EFENPEVAKIVADEMNNYLLFEHTLQIALVPP 365 FE+ + A E+N+ ++ L++ P Sbjct: 223 TFESRDDAARAIAELNDIRMYHMVLKVEWTRP 254
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 PEN VL++ + ++ ++ F +FG TG+S Y FIEFE E Sbjct: 238 PEN---VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDC 294 Query: 294 KIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKG 395 + +M+N L+ + + + + V WKG Sbjct: 295 EKAFFKMDNVLIDDRRIHVDF--SQSVAKVKWKG 326
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 PEN VL++ + ++ ++ F +FG TG+S Y FIEFE E Sbjct: 238 PEN---VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDC 294 Query: 294 KIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKG 395 + +M+N L+ + + + + V WKG Sbjct: 295 EKAFFKMDNVLIDDRRIHVDF--SQSVAKVKWKG 326
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 34.3 bits (77), Expect = 0.25 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = +3 Query: 6 RVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQG 185 +V + +A P DG+ +E K RE Q T +++G + E ++ Sbjct: 66 KVDAAMNARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 122 Query: 186 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEF-ENPEVAKIV 302 +F+Q+G +GK + + F+ F ++ V KIV Sbjct: 123 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 34.3 bits (77), Expect = 0.25 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Frame = +3 Query: 15 SRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQ 194 SR KT D K P + + + K+ +++G + + ++ +F+ Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKK----------IFVGGLSVNTTVEDVKHYFE 130 Query: 195 QFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD----EMNNYLL 329 QFG T + + +GF+ FE+ ++ + V + E+NN ++ Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179 Score = 31.2 bits (69), Expect = 2.1 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF-ENPEVAKIVADE 311 ++IG + ++ ++ +F QFG T +S+ +GF+ F + V K++A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-- 79 Query: 312 MNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKMVE 491 + + L T+ + P + K+ +K F+ LS + TVE+ K E Sbjct: 80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFV---------GGLSVNTTVEDVKHYFE 130 Query: 492 GIVKRDE 512 K D+ Sbjct: 131 QFGKVDD 137
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 34.3 bits (77), Expect = 0.25 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Frame = +3 Query: 15 SRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQ 194 SR KT D K P + + + K+ +++G + + ++ +F+ Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKK----------IFVGGLSVNTTVEDVKHYFE 130 Query: 195 QFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD----EMNNYLL 329 QFG T + + +GF+ FE+ ++ + V + E+NN ++ Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179 Score = 31.2 bits (69), Expect = 2.1 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF-ENPEVAKIVADE 311 ++IG + ++ ++ +F QFG T +S+ +GF+ F + V K++A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-- 79 Query: 312 MNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKMVE 491 + + L T+ + P + K+ +K F+ LS + TVE+ K E Sbjct: 80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFV---------GGLSVNTTVEDVKHYFE 130 Query: 492 GIVKRDE 512 K D+ Sbjct: 131 QFGKVDD 137
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 34.3 bits (77), Expect = 0.25 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Frame = +3 Query: 15 SRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQ 194 SR KT D K P + + + K+ +++G + + ++ +F+ Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKK----------IFVGGLSVNTTVEDVKQYFE 130 Query: 195 QFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD----EMNNYLL 329 QFG T + + +GF+ FE+ ++ + V + E+NN ++ Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179 Score = 32.0 bits (71), Expect = 1.2 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 1/127 (0%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF-ENPEVAKIVADE 311 ++IG + ++ ++ +F QFG T +S+ +GF+ F + V K++A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-- 79 Query: 312 MNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKMVE 491 + + L T+ + P + K+ +K F+ LS + TVE+ K+ E Sbjct: 80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFV---------GGLSVNTTVEDVKQYFE 130 Query: 492 GIVKRDE 512 K D+ Sbjct: 131 QFGKVDD 137
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 33.9 bits (76), Expect = 0.33 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 12/118 (10%) Frame = +3 Query: 69 EGKEQRIREKKQA----EEPENTATV--------LYIGHVPHGFYEDQMQGFFQQFGXXX 212 EGK+ + K A EEP T+ L++ ++ + E+ + F Q+G Sbjct: 269 EGKKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELE 328 Query: 213 XXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKL 386 TG+ K + ++FE+PE A + + + L I P+K + +L Sbjct: 329 EVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKDYNRL 386 Score = 30.8 bits (68), Expect = 2.8 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 S +GF+EF + E A+I M+ ++L H LQ+ + Sbjct: 650 SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKI 685
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 33.9 bits (76), Expect = 0.33 Identities = 20/83 (24%), Positives = 36/83 (43%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 + + PEN V + V ++ ++ F +FG TG S Y FIEFE+ Sbjct: 242 EVKPPENVLFVCKLNPVTQ---DEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFES 298 Query: 282 PEVAKIVADEMNNYLLFEHTLQI 350 + + +M L+ +H + + Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHV 321
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 33.9 bits (76), Expect = 0.33 Identities = 21/91 (23%), Positives = 38/91 (41%) Frame = +3 Query: 93 EKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 272 E ++ +EP A L++G++P+ + + FQQ G T +S+ +GF+ Sbjct: 86 ETEEYQEPSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVT 144 Query: 273 FENPEVAKIVADEMNNYLLFEHTLQIALVPP 365 E A + + Y L L + P Sbjct: 145 MSTVEEADKAVELYSQYDLNGRLLTVNKAAP 175
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 33.9 bits (76), Expect = 0.33 Identities = 31/136 (22%), Positives = 53/136 (38%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 PEN V + V D ++ F +FG TG S Y FIEF+ + A Sbjct: 260 PENILFVCKLNPVTRS---DDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDA 316 Query: 294 KIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEE 473 + +M N L+ + + + + V V+K D + +++V+ Sbjct: 317 ERAYFKMQNVLVDDRRIWVDF--SQSVSRLHGDWVKKRNAGSDAPRAHYQSGADEQSVDS 374 Query: 474 HKKMVEGIVKRDEKRR 521 ++ G KR + RR Sbjct: 375 YRPNAGGYQKRGDDRR 390
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 33.9 bits (76), Expect = 0.33 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +3 Query: 138 YIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 ++G + ++ +Q F QFG +G+S+ +GF+ F++ + + +EMN Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +3 Query: 33 PKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXX 212 P T DG+ +E K RE+ T L++G + E ++ +F+++G Sbjct: 71 PHTIDGR---VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKID 127 Query: 213 XXXXXXXXXTGKSKHYGFIEFENPE-VAKIV 302 +GK + + F+ F++ + V KIV Sbjct: 128 SIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 33.9 bits (76), Expect = 0.33 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPENT--ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXX 239 L GK R+ Q + NT L++G++ E + F G Sbjct: 77 LFGKPIRVNRASQ-DRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE 135 Query: 240 TGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 G+SK YGF+ +++ E A + MNN L + ++ Sbjct: 136 NGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVS 173
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 33.9 bits (76), Expect = 0.33 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G++ Q+ F+ G TG+S+ +GF+ + A + Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 315 NNYLLFEHTLQI-ALVPPEKVHAKLWKGVRKG 407 N Y L++ A PP K +G R G Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREESFSRGPRSG 192
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/70 (24%), Positives = 30/70 (42%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 P ++IG +P +ED++ ++ G G ++ Y F+ F N A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVEA 109 Query: 294 KIVADEMNNY 323 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 33.5 bits (75), Expect = 0.43 Identities = 21/89 (23%), Positives = 39/89 (43%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 RIR +E +++G++P+ E ++ F G TG K +G Sbjct: 272 RIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFG 331 Query: 264 FIEFENPEVAKIVADEMNNYLLFEHTLQI 350 ++ FEN + + A ++NN L L++ Sbjct: 332 YVLFENTDSVHL-ALKLNNSELMGRKLRV 359
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 33.5 bits (75), Expect = 0.43 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +3 Query: 126 ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVA 305 +T L+IG + G + ++ F FG TG+S+ +GF+ F + A Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 306 DEMN 317 EM+ Sbjct: 94 SEMD 97
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 33.5 bits (75), Expect = 0.43 Identities = 15/66 (22%), Positives = 30/66 (45%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T LY+ ++P +D+++ F ++G TG+ + F+ F E A+ Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247 Query: 309 EMNNYL 326 +NN + Sbjct: 248 ALNNVI 253
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 33.5 bits (75), Expect = 0.43 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG + E ++ F ++G T KS+ + F+ FE+P AK A +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 315 N 317 N Sbjct: 70 N 70
>STT3_CAEEL (P46975) Oligosaccharyl transferase STT3 subunit homolog| Length = 757 Score = 33.5 bits (75), Expect = 0.43 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -3 Query: 535 ALILLRRFSSRFTIPSTIFLCSSTVLSLLSRFRSIATRSTGINPFRTPFH 386 ALI++ R+SSR + T F C +T+LS+ F G P RT H Sbjct: 227 ALIIMGRYSSRLFVSYTSFYCLATILSMQVPF-------VGFQPVRTSEH 269
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 33.5 bits (75), Expect = 0.43 Identities = 17/70 (24%), Positives = 30/70 (42%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 P ++IG +P +ED++ ++ G G ++ Y F+ F N A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKLEA 109 Query: 294 KIVADEMNNY 323 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 33.1 bits (74), Expect = 0.56 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 SA P DG+ +E K RE T +++G + E ++ +F+ +G Sbjct: 86 SARPHKVDGR---VVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYG 142 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADEMNNYLLFEHTLQIALVPPEKVHA 380 +GK + + F+ F++ + V KIV + + L ++ AL E A Sbjct: 143 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQTA 202 Query: 381 KLWKG 395 +G Sbjct: 203 SAQRG 207
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 33.1 bits (74), Expect = 0.56 Identities = 20/89 (22%), Positives = 39/89 (43%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 RIR +E +++G++P+ E ++ F G TG + +G Sbjct: 270 RIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFG 329 Query: 264 FIEFENPEVAKIVADEMNNYLLFEHTLQI 350 ++ FEN + + A ++NN L L++ Sbjct: 330 YVLFENTDAVHL-ALKLNNSELMGRKLRV 357
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 33.1 bits (74), Expect = 0.56 Identities = 20/97 (20%), Positives = 43/97 (44%) Frame = +3 Query: 102 QAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 + + PEN VL++ + ++ ++ F +FG TG S Y FIEFE+ Sbjct: 247 EVKPPEN---VLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFED 303 Query: 282 PEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWK 392 + + +M++ L+ + + + + +W+ Sbjct: 304 KKSCEEAYSKMDSVLIDDRRIHVDFSQSVSKLSDVWR 340
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 33.1 bits (74), Expect = 0.56 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 5/106 (4%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATV-----LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXX 239 +E + +++EE ++ + L++ ++ + ED + F +G Sbjct: 307 EETEVETSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTR 366 Query: 240 TGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVH 377 TG+SK + ++ F+N + A E++ + L I +K H Sbjct: 367 TGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLLHILPADAKKSH 412
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 33.1 bits (74), Expect = 0.56 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F FG T +S+ +GFI F NPE A M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 33.1 bits (74), Expect = 0.56 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATV------LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXX 230 E EQ + ++ + E T L++ ++ + E+ + F +G Sbjct: 275 EPAEQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAV 334 Query: 231 XXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVH 377 TG+SK + ++ F++PE A E++ + L I +K H Sbjct: 335 DTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAKKTH 383
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 33.1 bits (74), Expect = 0.56 Identities = 15/66 (22%), Positives = 29/66 (43%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T LY+ ++P +DQ+ F ++G TG+ + F+ + E A+ Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272 Query: 309 EMNNYL 326 +NN + Sbjct: 273 ALNNVI 278
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 33.1 bits (74), Expect = 0.56 Identities = 15/66 (22%), Positives = 29/66 (43%) Frame = +3 Query: 129 TVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVAD 308 T LY+ ++P +DQ+ F ++G TG+ + F+ + E A+ Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270 Query: 309 EMNNYL 326 +NN + Sbjct: 271 ALNNVI 276
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 33.1 bits (74), Expect = 0.56 Identities = 17/73 (23%), Positives = 32/73 (43%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADE 311 +L++ + ED++Q F +G TG SK Y +E+E + A + Sbjct: 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 Query: 312 MNNYLLFEHTLQI 350 +N + T+Q+ Sbjct: 134 LNGAEIMGQTIQV 146
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 32.7 bits (73), Expect = 0.73 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 ++A L+IG +P+ +DQ++ FG TG SK Y F E+ + V Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315 Query: 300 VADEMNNYLLFEHTLQI 350 +N L + L + Sbjct: 316 AIAGLNGMQLGDKKLLV 332
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 32.7 bits (73), Expect = 0.73 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 ++A L+IG +P+ +DQ++ FG TG SK Y F E+ + V Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315 Query: 300 VADEMNNYLLFEHTLQI 350 +N L + L + Sbjct: 316 AIAGLNGMQLGDKKLLV 332
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 32.7 bits (73), Expect = 0.73 Identities = 27/127 (21%), Positives = 47/127 (37%) Frame = +3 Query: 111 EPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEV 290 + E T + I ++P ++ + F G + F F +PE Sbjct: 226 DEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEE 285 Query: 291 AKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVE 470 AK V +N Y + L++ WK + P +R +ER + K + VE Sbjct: 286 AKTVVQVLNGYEITGRRLRVE-----------WK---RQLPPAERERVERGKQEK-RAVE 330 Query: 471 EHKKMVE 491 E K ++ Sbjct: 331 ERKNQLK 337
>GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152| Length = 511 Score = 32.7 bits (73), Expect = 0.73 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 14 LAPLGRPQNRRRQGFPAAGGERAEDPGEEASRG 112 L P+ +PQ+ PA G E A +PGEE S G Sbjct: 441 LDPVAQPQSNTETPIPAFGDESASNPGEENSSG 473
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 32.7 bits (73), Expect = 0.73 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +3 Query: 111 EPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 275 EPEN + ++G + +D M+ F+ QFG T +S+ +GF+ F Sbjct: 18 EPENLRKI-FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 32.7 bits (73), Expect = 0.73 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = +3 Query: 93 EKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 272 E++ A++ E T L+I ++ + E+ + F Q+G TGKSK + +++ Sbjct: 299 EEQIAQKIEETGR-LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQ 357 Query: 273 FENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVH 377 F E A ++ + L I +K H Sbjct: 358 FLKKEDATRAYRSLDKQIFQGRLLHILPADKKKDH 392
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 32.7 bits (73), Expect = 0.73 Identities = 19/89 (21%), Positives = 39/89 (43%) Frame = +3 Query: 84 RIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYG 263 RIR +E +++G++P+ + ++ F G TG + +G Sbjct: 276 RIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFG 335 Query: 264 FIEFENPEVAKIVADEMNNYLLFEHTLQI 350 ++ FEN + + A ++NN L L++ Sbjct: 336 YVLFENTDAVHL-ALKLNNSELMGRKLRV 363
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 32.3 bits (72), Expect = 0.95 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +3 Query: 132 VLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPE 287 +L++G++ +D ++ FQ G +GK K + FI+F+N E Sbjct: 240 ILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEE 291
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 32.3 bits (72), Expect = 0.95 Identities = 16/72 (22%), Positives = 32/72 (44%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G +P+ E + F Q+G TGKSK + F+ +E+ + D Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 315 NNYLLFEHTLQI 350 N + T+++ Sbjct: 98 NGIKIKGRTIRV 109
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/90 (24%), Positives = 34/90 (37%) Frame = +3 Query: 24 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFG 203 +A P DG +E K RE L++G + E + F QFG Sbjct: 66 AASPHAVDGNT---VELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFG 122 Query: 204 XXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 +GK + +GF+ F+N + A Sbjct: 123 TVEKAEIIADKQSGKKRGFGFVYFQNHDAA 152
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 32.0 bits (71), Expect = 1.2 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 16/120 (13%) Frame = +3 Query: 45 DGKDFLPLEGKEQRIREKKQAEEPENT----------------ATVLYIGHVPHGFYEDQ 176 DG +F+ G++ ++R + + +NT A ++IG +P+ EDQ Sbjct: 241 DGINFM---GQQLKVRRPRDYQPSQNTFDMNARMPVSSIVVDSANKIFIGGLPNYLTEDQ 297 Query: 177 MQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 ++ FG G SK Y F E+ +P + +N L + L + L Sbjct: 298 VKELLCSFG-PLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQL 356
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 32.0 bits (71), Expect = 1.2 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 16/120 (13%) Frame = +3 Query: 45 DGKDFLPLEGKEQRIREKKQAEEPENT----------------ATVLYIGHVPHGFYEDQ 176 DG +F+ G++ ++R + + +NT A ++IG +P+ EDQ Sbjct: 250 DGINFM---GQQLKVRRPRDYQPSQNTFDMNSRMPVSTIVVDSANKIFIGGLPNYLTEDQ 306 Query: 177 MQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 ++ FG G SK Y F E+ +P + +N L + L + L Sbjct: 307 VKELLCSFG-PLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQL 365
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 32.0 bits (71), Expect = 1.2 Identities = 21/72 (29%), Positives = 32/72 (44%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG + E ++ F + G T KS+ + FI FENP AK A +M Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68 Query: 315 NNYLLFEHTLQI 350 N L +++ Sbjct: 69 NGKSLHGKAIKV 80
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG + ED ++ F ++G T +S+ +GF+ FEN + AK M Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 315 N 317 N Sbjct: 67 N 67
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 32.0 bits (71), Expect = 1.2 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADE 311 L++G + E +++ F ++G TG+S+ + FI F N E + K+ A + Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117 Query: 312 MNNYLLFEHTLQIALVPPEKV---HAKLWKG 395 EH + V P+K H K++ G Sbjct: 118 -------EHIINSKKVDPKKAKARHGKIFVG 141
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F ++G T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F ++G T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/65 (26%), Positives = 27/65 (41%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G + + ++ F FG TGKSK YGF+ F N A+ +M Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 315 NNYLL 329 L Sbjct: 168 GGQWL 172
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/65 (26%), Positives = 27/65 (41%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G + + ++ F FG TGKSK YGF+ F N A+ +M Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 315 NNYLL 329 L Sbjct: 168 GGQWL 172
>FEMA_STAAW (P0A0A4) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAU (P0A0A5) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAS (Q6G9I5) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAR (Q6GH31) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAN (Q7A5R3) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAM (Q99UA7) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAC (Q5HG45) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>FEMA_STAAB (Q2YXZ5) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 306 DEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 D+M+N L FEHT G KGF PV ++ KDKT ++ K Sbjct: 133 DKMSN-LGFEHT-----------------GFHKGFDPVLQIRYHSVLDLKDKTADDIIKN 174 Query: 486 VEGIVKRDEKRRKR 527 ++G+ KR+ K+ K+ Sbjct: 175 MDGLRKRNTKKVKK 188
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/79 (25%), Positives = 34/79 (43%) Frame = +3 Query: 114 PENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 PEN V + V ++ ++ F +FG +G S Y FIEF+ E A Sbjct: 244 PENILFVCKLNPVTQ---DEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAA 300 Query: 294 KIVADEMNNYLLFEHTLQI 350 + +M N L+ + + + Sbjct: 301 EQAYFKMQNVLVDDRRIWV 319
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Frame = +3 Query: 81 QRIREKKQAEEPENTATV------LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 ++ R+ ++A E A+ L + ++ ++ ++ F+ FG Sbjct: 318 EKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN 377 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 +SK +G+I++ NP A+ ++MN + L +++ L Sbjct: 378 -RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL 414
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/73 (23%), Positives = 32/73 (43%) Frame = +3 Query: 63 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT 242 P +E I + + P TA ++G++P+ ED ++ FF+ Sbjct: 77 PRAAREPNIDRSRLPKSPPYTA---FLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNP 133 Query: 243 GKSKHYGFIEFEN 281 + K +G+ EFE+ Sbjct: 134 DRLKGFGYAEFED 146
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F ++G T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F ++G T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G + E ++ F ++G T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 315 N 317 N Sbjct: 68 N 68
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 +++G + + ++ F FG TGKSK YGF+ F N Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
>TBC12_HUMAN (O60347) TBC1 domain family member 12| Length = 769 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = +2 Query: 2 EARALAPLGRPQNRRRQGFPAAGGERAEDPGEEASRGAG 118 EAR LA G ++RRR+ + G R E PG+E + GAG Sbjct: 145 EARGLARAGGRESRRRRPY---GRLRLEGPGDEDADGAG 180
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G++P ED+ + F ++G K K +GFI+ E+ +A+I E+ Sbjct: 299 LFVGNLPADITEDEFKRLFAKYG------EPGEVFINKGKGFGFIKLESRALAEIAKAEL 352 Query: 315 NN 320 ++ Sbjct: 353 DD 354
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXX-XXXXXTGKSKH 257 +R ++++ P T ++IG + +D + F +G SK Sbjct: 145 KRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 204 Query: 258 YGFIEFENPEVAKIVADEMN 317 Y ++EFENP+ A+ M+ Sbjct: 205 YAYVEFENPDEAEKALKHMD 224
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXX-XXXXXTGKSKH 257 +R ++++ P T ++IG + +D + F +G SK Sbjct: 145 KRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 204 Query: 258 YGFIEFENPEVAKIVADEMN 317 Y ++EFENP+ A+ M+ Sbjct: 205 YAYVEFENPDEAEKALKHMD 224
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXX-XXXXXTGKSKH 257 +R ++++ P T ++IG + +D + F +G SK Sbjct: 145 KRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 204 Query: 258 YGFIEFENPEVAKIVADEMN 317 Y ++EFENP+ A+ M+ Sbjct: 205 YAYVEFENPDEAEKALKHMD 224
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXX-XXXXXTGKSKH 257 +R ++++ P T ++IG + +D + F +G SK Sbjct: 145 KRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 204 Query: 258 YGFIEFENPEVAKIVADEMN 317 Y ++EFENP+ A+ M+ Sbjct: 205 YAYVEFENPDEAEKALKHMD 224
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 81 QRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXX-XXXXXTGKSKH 257 +R ++++ P T ++IG + +D + F +G SK Sbjct: 145 KRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 204 Query: 258 YGFIEFENPEVAKIVADEMN 317 Y ++EFENP+ A+ M+ Sbjct: 205 YAYVEFENPDEAEKALKHMD 224
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++G++P ED+ + F ++G K K +GFI+ E+ +A+I E+ Sbjct: 291 LFVGNLPADITEDEFKRLFAKYG------EPGEVFINKGKGFGFIKLESRALAEIAKAEL 344 Query: 315 NN 320 ++ Sbjct: 345 DD 346
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG + E ++ F ++G T KS+ + F+ E+P AK A +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 315 N 317 N Sbjct: 70 N 70
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 31.2 bits (69), Expect = 2.1 Identities = 13/60 (21%), Positives = 29/60 (48%) Frame = +3 Query: 138 YIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 ++G + ++ ++ F QFG TG+S+ +GF+ F++ + + + MN Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 138 YIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMN 317 ++G + E ++ F QFG TG+S+ +GF+ F++ + K + MN Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFEN 281 +++G + + ++ F FG TGKSK YGF+ F N Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 147
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +Y+G +P+G E ++ FF+ +G YGF+EFE+ A E+ Sbjct: 5 VYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYEL 56 Query: 315 N 317 N Sbjct: 57 N 57
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = +3 Query: 168 EDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLL 329 + Q++ F FG +G SK YGF+ F E A D +N ++ Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMV 450
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/78 (23%), Positives = 34/78 (43%) Frame = +3 Query: 117 ENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 E + VLY+G++ ED ++ +F Q G K+ +Y F+E+ A Sbjct: 70 ETSDRVLYVGNLDKAITEDILKQYF-QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDAN 128 Query: 297 IVADEMNNYLLFEHTLQI 350 I +N + + ++I Sbjct: 129 IALQTLNGKQIENNIVKI 146
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 30.8 bits (68), Expect = 2.8 Identities = 26/87 (29%), Positives = 38/87 (43%) Frame = +3 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVD 422 GKSK Y FIEF + E AK + N + T+++ L P + + F+ Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFV--- 578 Query: 423 RVAIERNRLSKDKTVEEHKKMVEGIVK 503 LS+D T E K+ EG V+ Sbjct: 579 ------KGLSEDTTEETLKESFEGSVR 599
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 30.8 bits (68), Expect = 2.8 Identities = 26/87 (29%), Positives = 38/87 (43%) Frame = +3 Query: 243 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKGFIPVD 422 GKSK Y FIEF + E AK + N + T+++ L P + + F+ Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFV--- 575 Query: 423 RVAIERNRLSKDKTVEEHKKMVEGIVK 503 LS+D T E K+ EG V+ Sbjct: 576 ------KGLSEDTTEETLKESFEGSVR 596
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK-- 248 K + E+++ EE L+I ++ E++++ F + G Sbjct: 712 KMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVL 771 Query: 249 -SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAL 356 S +GF+E+ PE A+ ++ +++ H L++ + Sbjct: 772 LSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808 Score = 30.0 bits (66), Expect = 4.7 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L + ++P+G E++ + F FG GK + +GFI F++ E A+ Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFG-TLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62 Query: 315 NNYLLFEHTLQIALVPP--EKVHAKLW-KGVRKGFIPVDRVAIERNRLSKDKTVEEHKKM 485 N + + + + + W K +K P + KD T E Sbjct: 63 NKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQP--------KQPPKDSTTPE---- 110 Query: 486 VEGIVKRDEKRRK 524 +K+DEK++K Sbjct: 111 ----IKKDEKKKK 119
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/83 (20%), Positives = 39/83 (46%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L++ ++P F + ++ F++FG SK +GF+ E P+ A+ E+ Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQEL 212 Query: 315 NNYLLFEHTLQIALVPPEKVHAK 383 + ++ +++ +VH+K Sbjct: 213 HGSMIEGRKIEVNCA-TARVHSK 234
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/77 (24%), Positives = 31/77 (40%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKI 299 N +Y+G + E + F Q G TG+ + YGF+EF + E A Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69 Query: 300 VADEMNNYLLFEHTLQI 350 MN L+ +++ Sbjct: 70 AIKIMNMIKLYGKPIRV 86
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/77 (24%), Positives = 34/77 (44%) Frame = +3 Query: 126 ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVA 305 A +++ ++P F ++ F + G GKSK G ++FE+PEVA+ Sbjct: 651 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERAC 708 Query: 306 DEMNNYLLFEHTLQIAL 356 MN L + + + Sbjct: 709 RMMNGMKLSGREIDVRI 725
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/99 (20%), Positives = 44/99 (44%) Frame = +3 Query: 54 DFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXX 233 D P +G+ Q + + E ++ L++ ++P F + ++ F QFG Sbjct: 93 DAAPTDGQPQT--QPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 150 Query: 234 XXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 350 SK +GF+ FEN A ++++ ++ +++ Sbjct: 151 ERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 275 ++IG +P+ +DQ++ FG TG SK Y F E+ Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/78 (21%), Positives = 36/78 (46%) Frame = +3 Query: 90 REKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFI 269 R+ + A+ P +LYI ++P+ ++M F +FG T +++ F+ Sbjct: 6 RQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFG---AVRQIRVGNTAETRGTAFV 62 Query: 270 EFENPEVAKIVADEMNNY 323 +E+ AK + ++ Y Sbjct: 63 VYEDIFDAKTACEHLSGY 80
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 30.4 bits (67), Expect = 3.6 Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Frame = +3 Query: 12 LSRRSAGPKTGDGKDFLP--LEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQG 185 +S R++G G+ P G + + E +++AT L + ++ E++++ Sbjct: 162 VSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSAT-LRVTNLSDDTREEELRD 220 Query: 186 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNY 323 F++FG TG++K + F+ + + + A D ++ Y Sbjct: 221 LFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGY 266
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 30.4 bits (67), Expect = 3.6 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 5/156 (3%) Frame = +3 Query: 72 GKEQRIREK-KQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 G+ R R++ +QA + + + + + + +++ F +FG T + Sbjct: 85 GRTSRDRQRMRQARDHPQASRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHR 144 Query: 249 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIALVPPEKVHAKLWKGVRKG--FIPVD 422 S+ + FI FEN A++ D + +++ ++ H GV G P+ Sbjct: 145 SRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPT-PGVYMGRPSRPLG 203 Query: 423 RVAIERNRLSKD--KTVEEHKKMVEGIVKRDEKRRK 524 R + ER+ ++D ++ H+ + D RRK Sbjct: 204 RRSRERDYSTRDTSRSRRRHRDESSSVSPYDSNRRK 239
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/77 (24%), Positives = 34/77 (44%) Frame = +3 Query: 126 ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVA 305 A +++ ++P F ++ F + G GKSK G ++FE+PEVA+ Sbjct: 611 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERAC 668 Query: 306 DEMNNYLLFEHTLQIAL 356 MN L + + + Sbjct: 669 RMMNGMKLSGREIDVRI 685
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/77 (24%), Positives = 34/77 (44%) Frame = +3 Query: 126 ATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVA 305 A +++ ++P F ++ F + G GKSK G ++FE+PEVA+ Sbjct: 650 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERAC 707 Query: 306 DEMNNYLLFEHTLQIAL 356 MN L + + + Sbjct: 708 RMMNGMKLSGREIDVRI 724
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/62 (22%), Positives = 31/62 (50%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +Y+G++ G +D ++ F + G +G+S+ +GF+ + + A+E+ Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS-------AEEV 248 Query: 315 NN 320 NN Sbjct: 249 NN 250 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/77 (19%), Positives = 32/77 (41%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 +++G++ + F++ G TG+S+ +GF+ + E + + Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 315 NNYLLFEHTLQIALVPP 365 N Y L L++ PP Sbjct: 149 NGYELDGRALRVNSGPP 165
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEM 314 L+IG++P E +++ F+Q+G K+YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55 Query: 315 NNYLL 329 ++Y L Sbjct: 56 HHYKL 60
>PAX3_MOUSE (P24610) Paired box protein Pax-3| Length = 479 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +3 Query: 9 VLSRRSAGPKTGDGKDF-----LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYED 173 +LS R++ P++ +G D LPL+ K++R R AE+ E H P + + Sbjct: 191 ILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250 Query: 174 QM 179 ++ Sbjct: 251 EL 252
>PAX3_HUMAN (P23760) Paired box protein Pax-3 (HUP2)| Length = 479 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +3 Query: 9 VLSRRSAGPKTGDGKDF-----LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYED 173 +LS R++ P++ +G D LPL+ K++R R AE+ E H P + + Sbjct: 191 ILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250 Query: 174 QM 179 ++ Sbjct: 251 EL 252
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +3 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 F FG T K K +GF+ N E A + +N Y L + LQ++ Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318 Score = 30.0 bits (66), Expect = 4.7 Identities = 20/88 (22%), Positives = 34/88 (38%) Frame = +3 Query: 60 LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXX 239 L L+ K ++ + + E A LYI +P + ++ F +FG Sbjct: 84 LRLQSKTIKVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQT 142 Query: 240 TGKSKHYGFIEFENPEVAKIVADEMNNY 323 TG S+ FI F+ A+ N + Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGH 170
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.0 bits (66), Expect = 4.7 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 26 GRPQNRRRQGFPAAGGERAEDPGEEASRGAGE 121 GRP +R+ GFP G E+ + +++G+GE Sbjct: 192 GRPSSRKASGFPQPGSEQGQS-SSSSTKGSGE 222
>ABT1_MOUSE (Q9QYL7) Activator of basal transcription 1| Length = 269 Score = 30.0 bits (66), Expect = 4.7 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 32/114 (28%) Frame = +3 Query: 75 KEQRIREKKQAEEPENTAT-------------VLYIGHVPHGF-----------YEDQMQ 182 +E + EEPE+TA ++Y+GHVP F Y + + Sbjct: 17 EEANAEAAEDQEEPEDTACSSSSKKKKKVVPGIVYLGHVPPRFRPLHVRNLLSAYGEVGR 76 Query: 183 GFFQQFGXXXXXXXXXXXXTGK------SKHY--GFIEFENPEVAKIVADEMNN 320 FFQ G SK Y G++EF + VAK VA ++N Sbjct: 77 VFFQAEDHFVKRKKKAAAAAGGKKGAKYSKDYTEGWVEFRDKRVAKRVAASLHN 130
>V27K_SWPV1 (Q8V3L7) 27 kDa virion core protein| Length = 244 Score = 30.0 bits (66), Expect = 4.7 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = -2 Query: 533 LDSFATLLIPLYNSFDHLLVLFHCFILTKPIPFNCYPVNWYKS 405 +D + I YN ++++ +++HC+ K FN + W++S Sbjct: 181 IDKYIMTCIVKYNDYNNIKLIYHCYNRNK---FNAFIYAWFRS 220
>SYV_CHLAB (Q5L5J6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 940 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Frame = +3 Query: 390 KGVRKG-FIPVDRVAIERNRLSKDKT 464 +G+R G F+PV+ +A E+ RL K+KT Sbjct: 863 EGIRLGVFVPVEHIAKEKTRLEKEKT 888
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 30.0 bits (66), Expect = 4.7 Identities = 20/99 (20%), Positives = 44/99 (44%) Frame = +3 Query: 54 DFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXX 233 D P +G+ Q + + E ++ L++ ++P F + ++ F QFG Sbjct: 94 DAAPTDGQPQT--QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 151 Query: 234 XXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 350 SK +GF+ FEN A ++++ ++ +++ Sbjct: 152 ERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Frame = +3 Query: 120 NTATVLYIGHVPHGFYEDQMQGFFQ-QFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAK 296 N LY+G++P + ++ F+ +G K + FIEF+ K Sbjct: 32 NDRRTLYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLK 91 Query: 297 IVADEMNNYLLFEHTLQI--ALVPPEKVHAKLWKGVRK 404 V ++MN + + I L EK K K +K Sbjct: 92 KVKEKMNGKIFMNEKIVIENILTKEEKSFEKNQKSNKK 129
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPENTATV-------LYIGHVPHGFYEDQMQGFFQQFGXXXXXXX 224 +E ++Q + + + +P N L++ V + E +++ F+ +G Sbjct: 75 IERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM 134 Query: 225 XXXXXTGKSKHYGFIEFEN 281 +GK + Y FIE+E+ Sbjct: 135 VYSKRSGKPRGYAFIEYEH 153
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 20/76 (26%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXT-------------------GKSKH 257 LY+ H+P + ++ + F++ FG + G S+ Sbjct: 542 LYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRG 601 Query: 258 YGFIEFENP-EVAKIV 302 YGF+ FE+P + AK + Sbjct: 602 YGFVSFESPLDAAKAI 617
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Frame = +3 Query: 66 LEGKEQRIREKKQAEEPENTATV-------LYIGHVPHGFYEDQMQGFFQQFGXXXXXXX 224 +E ++Q + + + +P N L++ V + E +++ F+ +G Sbjct: 75 IERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM 134 Query: 225 XXXXXTGKSKHYGFIEFEN 281 +GK + Y FIE+E+ Sbjct: 135 VYSKRSGKPRGYAFIEYEH 153
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +3 Query: 96 KKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 275 K E+P T L+I + + E +++ F+ +G +GK K Y FIE+ Sbjct: 94 KNATEDPFRT---LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEY 150 Query: 276 EN 281 E+ Sbjct: 151 EH 152
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 29.6 bits (65), Expect = 6.1 Identities = 22/91 (24%), Positives = 37/91 (40%) Frame = +3 Query: 21 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQF 200 ++A KTG +G +R + ++ AT+ + ++ E +Q F+ F Sbjct: 204 QAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFRPF 262 Query: 201 GXXXXXXXXXXXXTGKSKHYGFIEFENPEVA 293 G TG+SK + FI F E A Sbjct: 263 GSISRIYLAKDKTTGQSKGFAFISFHRREDA 293
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 29.6 bits (65), Expect = 6.1 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Frame = +3 Query: 27 AGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGX 206 A P DG+ +E K RE T +++G + E ++ +F+++G Sbjct: 95 ARPHKVDGR---VVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGK 151 Query: 207 XXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADE 311 +GK + + F+ F++ + V KIV + Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 29.6 bits (65), Expect = 6.1 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Frame = +3 Query: 27 AGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGX 206 A P DG+ +E K RE T +++G + E ++ +F+++G Sbjct: 95 ARPHKVDGR---VVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGK 151 Query: 207 XXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADE 311 +GK + + F+ F++ + V KIV + Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
>SYV_CHLCV (Q822K4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 940 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Frame = +3 Query: 360 PPEKVHAK-LWKGVRKG-FIPVDRVAIERNRLSKDK-TVEEHKKMVEGIVKRDEKRRK 524 P ++V++ + +G+R G F+P++ + ERNRL K+K +E + V ++ + R K Sbjct: 852 PKDRVYSLGVVEGIRLGVFVPMEHITKERNRLEKEKMRLENSIESVSRLLSSESFRAK 909
>KAD6_ARCFU (O28278) Putative adenylate kinase (EC 2.7.4.3) (ATP-AMP| transphosphorylase) Length = 178 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 456 DKTVEEHKKMVEGIVKRDEKRRKRIKAAGIDY 551 + ++EE + VE I++ D + RKR K GID+ Sbjct: 132 EMSLEEVIEAVEAIIRGDREARKRYKPGGIDW 163
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 29.6 bits (65), Expect = 6.1 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Frame = +3 Query: 27 AGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGX 206 A P DG+ +E K RE T +++G + E ++ +F+++G Sbjct: 95 ARPHKVDGR---VVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGK 151 Query: 207 XXXXXXXXXXXTGKSKHYGFIEFENPE-VAKIVADE 311 +GK + + F+ F++ + V KIV + Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 29.6 bits (65), Expect = 6.1 Identities = 11/48 (22%), Positives = 23/48 (47%) Frame = +3 Query: 135 LYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGKSKHYGFIEFE 278 +Y+G++ + E + F ++G TG+ + +GF+E E Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELE 50
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/75 (24%), Positives = 31/75 (41%) Frame = +3 Query: 69 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDQMQGFFQQFGXXXXXXXXXXXXTGK 248 +G +R + ++ AT+ + ++ E +Q F+ FG TG+ Sbjct: 220 DGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278 Query: 249 SKHYGFIEFENPEVA 293 SK + FI F E A Sbjct: 279 SKGFAFISFHRREDA 293
>HUTU_RHIME (Q92V80) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 557 Score = 29.3 bits (64), Expect = 8.0 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 260 IMLGLSCLAVPCNPDSFN 207 +M G CLAV CNPDS + Sbjct: 186 VMAGACCLAVECNPDSID 203
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +3 Query: 189 FQQFGXXXXXXXXXXXXTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 353 F FG T K K +GF+ N E + + +N Y L + LQ++ Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVS 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,228,185 Number of Sequences: 219361 Number of extensions: 1530793 Number of successful extensions: 6081 Number of sequences better than 10.0: 246 Number of HSP's better than 10.0 without gapping: 5686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6055 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
