Clone Information

BLAST Search Result

Clone Name	bags14p24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (M...	40	0.007
2	OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B	35	0.13
3	MLP1_YEAST (Q02455) Protein MLP1 (Myosin-like protein 1)	35	0.22
4	UACA_CANFA (Q9GL21) Uveal autoantigen with coiled-coil domains a...	34	0.37
5	PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal prot...	34	0.37
6	PARB_NEIMB (Q9JXP5) Probable chromosome partitioning protein parB	33	0.83
7	PARB_NEIMA (Q9JW77) Probable chromosome partitioning protein parB	33	0.83
8	ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3...	32	1.1
9	MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa)...	32	1.1
10	CALD1_CHICK (P12957) Caldesmon (CDM)	32	1.4
11	CALD1_MELGA (P13505) Caldesmon, smooth muscle (CDM) (Fragment)	32	1.8
12	Y894_HAEIN (Q57500) Hypothetical protein HI0894	32	1.8
13	ATPF_BACHD (Q9K6H1) ATP synthase B chain (EC 3.6.3.14)	31	2.4
14	SYD_PYRAB (Q9V036) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	31	2.4
15	GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (G...	31	2.4
16	RDRP_PMV (P20951) RNA replication protein (176 kDa protein) (ORF...	31	2.4
17	NCA1_YEAST (P32493) Nuclear control of ATPase messenger RNA expr...	31	2.4
18	SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-b...	31	3.2
19	SNX4_CANAL (Q5AD77) Sorting nexin-4 (Autophagy-related protein 24)	31	3.2
20	GIDA_BACHK (Q6HAF3) tRNA uridine 5-carboxymethylaminomethyl modi...	31	3.2
21	GIDA_BACAN (Q81JH3) tRNA uridine 5-carboxymethylaminomethyl modi...	31	3.2
22	CCD93_RAT (Q5BJT7) Coiled-coil domain-containing protein 93	31	3.2
23	LAM0_DROME (P08928) Lamin Dm0	30	4.1
24	CAGA_HELPJ (Q9ZLT1) Cytotoxicity-associated immunodominant antig...	30	4.1
25	NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilamen...	27	4.2
26	LAMC2_HUMAN (Q13753) Laminin gamma-2 chain precursor (Laminin 5 ...	30	5.4
27	NOL6_MOUSE (Q8R5K4) Nucleolar protein 6 (Nucleolar RNA-associate...	30	5.4
28	ITC1_YEAST (P53125) Imitation switch two complex protein 1	30	5.4
29	CLMN_MOUSE (Q8C5W0) Calmin	30	5.4
30	NUF2_YEAST (P33895) Myosin-like protein NUF2 (Nuclear filament-c...	30	5.4
31	K1C19_POTTR (P51856) Keratin, type I cytoskeletal 19 (Cytokerati...	30	5.4
32	ISPE_BACHD (Q9KGK0) 4-diphosphocytidyl-2-C-methyl-D-erythritol k...	30	5.4
33	YGHB_ECOLI (P0AA60) Inner membrane protein yghB	30	5.4
34	YGHB_ECOL6 (P0AA61) Inner membrane protein yghB	30	5.4
35	YGHB_ECO57 (P0AA62) Inner membrane protein yghB	30	5.4
36	PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)	30	7.0
37	RASA2_RAT (Q63713) Ras GTPase-activating protein 2 (GAP1m)	30	7.0
38	PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediat...	30	7.0
39	GIDA_MYCPU (Q98QV8) tRNA uridine 5-carboxymethylaminomethyl modi...	30	7.0
40	ZN687_HUMAN (Q8N1G0) Zinc finger protein 687	30	7.0
41	RABX5_MOUSE (Q9JM13) Rab5 GDP/GTP exchange factor (Rabex-5)	30	7.0
42	K1C19_BOVIN (P08728) Keratin, type I cytoskeletal 19 (Cytokerati...	30	7.0
43	CF060_HUMAN (Q8NB25) Protein C6orf60	30	7.0
44	BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)	30	7.0
45	GIDA_BACLD (Q65CN2) tRNA uridine 5-carboxymethylaminomethyl modi...	29	9.2
46	ENPL_MOUSE (P08113) Endoplasmin precursor (Heat shock protein 90...	29	9.2
47	GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macr...	29	9.2
48	YQY1_CAEEL (Q09560) Hypothetical protein F36G3.1	29	9.2
49	FLAC_METVO (O06636) Putative flagella-related protein C	29	9.2
50	ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	29	9.2
51	ENPL_RABIT (O18750) Endoplasmin (Heat shock protein 90 kDa beta ...	29	9.2
52	TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-...	29	9.2
53	CHMP3_XENLA (Q6NRM7) Charged multivesicular body protein 3 (Chro...	29	9.2

>GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (Male-enhanced|
            antigen 2) (MEA-2)
          Length = 1487

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
 Frame = +3

Query: 60   DIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRK-HEGT 236
            ++   K+Q   + IEA   R H  A     ++ K E+   E + + + +E+   +  +G 
Sbjct: 1183 EVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGK 1242

Query: 237  TSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQ---IHMDNIYREVTNLLQ 407
             S+  +  +T  AE  + L L+ KK+ E  ++ +P  S E++     +D   RE+ +L Q
Sbjct: 1243 HSQEIAQFQTELAEARTQLQLLQKKLDEQMSQ-QPTGSQEMEDLKWELDQKEREIQSLKQ 1301

Query: 408  MMEKVQNSEIPGKEPFSEKMGVEGIQIRTEDKCGSATETQGSTY-YEYRLNAIFNGLNQL 584
             ++  +      KE    +  ++ I+   E      +ETQ   +  + +++ + N +  L
Sbjct: 1302 QLDLTEQQ--GKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTL 1359

Query: 585  CTQLDQ 602
              Q  Q
Sbjct: 1360 LQQNQQ 1365

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>OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B|
          Length = 294

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
 Frame = +3

Query: 60  DIQRRKQQ-----ETNSEIEAAKKRGHAAALISAPTD-----------TKLEMGETEGMK 191
           D +RRKQ      +  +E+EA  K     AL   PT+           T L++G  E ++
Sbjct: 39  DKKRRKQMTEDIAKLEAEVEARHKE-ELEALAQKPTEPTQVSSITNGVTSLDLGSEEPVQ 97

Query: 192 ENMLSEIQRRKHEGTTSETQSATETVRAEIYSL---LNLISKKVTELKAEPKPRISDEVQ 362
           +  +S+ Q+R+ +    E +       AEI +L    +L S+K+ ++ AE + +I    Q
Sbjct: 98  QPRVSKAQKRREKKAAQEKERDDRIAEAEIANLSGARHLESQKLAQILAERELQIR---Q 154

Query: 363 IHMDN--IYREVTNLL 404
           I  D   +YR + + L
Sbjct: 155 IPSDGHCMYRAIEHQL 170

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>MLP1_YEAST (Q02455) Protein MLP1 (Myosin-like protein 1)|
          Length = 1875

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 4/171 (2%)
 Frame = +3

Query: 57   ADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGT 236
            A+I+ R ++E N+E++A KK+               + G+ + M +  L E +  K E  
Sbjct: 1622 AEIESRLREEFNNELQAIKKK-------------SFDEGKQQAMMKTTLLERKLAKMESQ 1668

Query: 237  TSETQSATETVRAEIYSLLNL---ISKKVTELKAEP-KPRISDEVQIHMDNIYREVTNLL 404
             SET+ + E+    + ++ N    + +K+ E    P  P +S E              LL
Sbjct: 1669 LSETKQSAESPPKSVNNVQNPLLGLPRKIEENSNSPFNPLLSGE-------------KLL 1715

Query: 405  QMMEKVQNSEIPGKEPFSEKMGVEGIQIRTEDKCGSATETQGSTYYEYRLN 557
            ++  K   S   G  PF+     + +Q   + +   A +T   T+ E   N
Sbjct: 1716 KLNSK---SSSGGFNPFTSPSPNKHLQNDNDKRESLANKTDPPTHLEPSFN 1763

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>UACA_CANFA (Q9GL21) Uveal autoantigen with coiled-coil domains and ankyrin|
            repeats protein
          Length = 1415

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
 Frame = +3

Query: 60   DIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEM---------------GETEGMKE 194
            + +R K+    +E+E   K   A   +S PT+    M               GETE   E
Sbjct: 598  ETERDKKGRRVAEVEGQVKELLAKLTLSVPTEKFESMKSLLSSEVNEKVKKIGETEREYE 657

Query: 195  NMLSEIQRRKHEGTTSETQSAT-------ETVRAEIYSLLNLISKKVTELKAEPKPRISD 353
              L+EI++ + E    + + A        E +++ +      ++KKVTEL ++ +    D
Sbjct: 658  KSLTEIRQLRRELENCKAKLAQHVKPEEHEQLKSRLEQRAGELAKKVTELTSKNQVLQRD 717

Query: 354  EVQIHMDN--IYREVTNL 401
              ++++DN  + ++V NL
Sbjct: 718  VEKVYLDNKLLNQQVHNL 735

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>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
 Frame = +3

Query: 72   RKQQETNSEIEAAKKRGHAAALISAP-----TDTKLEMGETEGMKENMLSEIQRRKHEGT 236
            R++Q  ++E+E  KK         A      T  +L++ ET+  K  +  E+QR K E T
Sbjct: 2295 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKNLLDEELQRLKAEAT 2354

Query: 237  TSETQSATETVRAEIYSL---LNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQ 407
             +  Q +   V  E++S+   +  +SK    ++AE +  I  +       +  E   + Q
Sbjct: 2355 EAARQRS--QVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQ 2412

Query: 408  MMEKVQNSEIPGKE 449
            + E+     +  +E
Sbjct: 2413 VAEEAARLSVAAQE 2426

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>PARB_NEIMB (Q9JXP5) Probable chromosome partitioning protein parB|
          Length = 286

 Score = 32.7 bits (73), Expect = 0.83
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +3

Query: 120 GHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNL 299
           GHA AL++ P   +LE+ +        + E++RR      ++     +T  A+I  L +L
Sbjct: 183 GHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQAALQNKRPEPKKTAAADIGRLNDL 242

Query: 300 ISKKV 314
           +++K+
Sbjct: 243 LTEKL 247

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>PARB_NEIMA (Q9JW77) Probable chromosome partitioning protein parB|
          Length = 286

 Score = 32.7 bits (73), Expect = 0.83
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +3

Query: 120 GHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNL 299
           GHA AL++ P   +LE+ +        + E++RR      ++     +T  A+I  L +L
Sbjct: 183 GHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQAALQNKRPEPKKTAAADIGRLNDL 242

Query: 300 ISKKV 314
           +++K+
Sbjct: 243 LTEKL 247

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>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase xnp-1) (X-linked nuclear protein
           1)
          Length = 1359

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
 Frame = +3

Query: 75  KQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMK-ENMLSEIQRRKHEGTTSETQ 251
           + +E++ E+   KK+  A  LIS   D K +  E+E    E  +S+ + +K E + S + 
Sbjct: 293 ESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKVSKKKAKKQESSESGSD 352

Query: 252 SATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYRE 389
           S+  ++       +N  SKK  + + + K  I D  ++  + I  E
Sbjct: 353 SSEGSI------TVNRKSKKKEKPEKKKKGIIMDSSKLQKETIDAE 392

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>MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1959

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 7/157 (4%)
 Frame = +3

Query: 78   QQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSA 257
            ++E  S+  A  K  H A +    TD +  +   E  ++ +  E  RRK EG +S+    
Sbjct: 1010 EEEEKSKSLAKLKNKHEAMI----TDLEERLRREEKQRQEL--EKTRRKLEGDSSDLHDQ 1063

Query: 258  TETVRAEIYSLLNLISKKVTELKAEPKPRISDEV---QIHMDNIYREVTNLLQMMEKVQN 428
               ++A+I  L   +SKK  EL+A    R+ +E     + +  I    + + ++ E +++
Sbjct: 1064 IAELQAQIAELKIQLSKKEEELQA-ALARVEEEAAQKNMALKKIRELESQITELQEDLES 1122

Query: 429  SEIPGKEPFSEKMG----VEGIQIRTEDKCGSATETQ 527
                  +   +K      +E ++   ED   S    Q
Sbjct: 1123 ERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQ 1159

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>CALD1_CHICK (P12957) Caldesmon (CDM)|
          Length = 771

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
 Frame = +3

Query: 54  GADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGM------KENMLSEIQ 215
           G++  + KQQE   E++  KKR      I    + K +  E E        K+ M  EI+
Sbjct: 509 GSEKLKEKQQEAAVELDELKKRREERRKILEEEEQKKKQEEAERKIREEEEKKRMKEEIE 568

Query: 216 RRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPK 338
           RR+ E    + Q   E   +E        S K + LK E +
Sbjct: 569 RRRAE-AAEKRQKVPEDGVSEEKKPFKCFSPKGSSLKIEER 608

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>CALD1_MELGA (P13505) Caldesmon, smooth muscle (CDM) (Fragment)|
          Length = 274

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
 Frame = +3

Query: 54  GADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGM------KENMLSEIQ 215
           G++  + KQQE   E++  KKR      I    + K +  E E        K+ M  EI+
Sbjct: 12  GSEKLKEKQQEAAVELDELKKRREERRKILEEEEQKKKQEEAERKIREEEEKKRMKEEIE 71

Query: 216 RRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPK 338
           RR+ E    + Q   E   +E        S K + LK E +
Sbjct: 72  RRRAE-AAEKRQKMPEDGVSEEKKPFKCFSPKGSSLKIEER 111

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>Y894_HAEIN (Q57500) Hypothetical protein HI0894|
          Length = 382

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 31/137 (22%), Positives = 57/137 (41%)
 Frame = +3

Query: 123 HAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNLI 302
           H    ++A TD +L  GET   +   ++ I+   +  T      AT         L  + 
Sbjct: 211 HIGQRVTATTDARL--GETFSAR---ITAIEPAINSSTGLVDVQATFDPEDGHKLLSGMF 265

Query: 303 SKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQNSEIPGKEPFSEKMGVEGI 482
           S+    L  E    +  +V I   N+Y E+  LL+ + + +  ++ G E        + I
Sbjct: 266 SRLRIALPTETNQVVVPQVAISY-NMYGEIAYLLEPLSEEEKGKMSGNEKLDRLYRAKQI 324

Query: 483 QIRTEDKCGSATETQGS 533
            + T+D+ G   + QG+
Sbjct: 325 TVFTKDRQGVYAQLQGN 341

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>ATPF_BACHD (Q9K6H1) ATP synthase B chain (EC 3.6.3.14)|
          Length = 162

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
 Frame = +3

Query: 57  ADIQRRKQQE--TNSEIEAAKKRGHAAALISAPTDTKLEMG---------ETEGMKENML 203
           AD  R+  QE      +   K R  A  ++        + G         E E +KE  L
Sbjct: 49  ADKDRKAAQEYLEQQRLAVEKAREEAQEIVQKAKKLSEQQGQEIVEAARAEGERLKEAAL 108

Query: 204 SEIQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPK 338
           +EIQR K        + A  ++R ++ SL  LI+ KV E + + K
Sbjct: 109 AEIQREK--------EQAVASLREQVASLSVLIATKVIEKELDEK 145

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>SYD_PYRAB (Q9V036) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 438

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 291 LNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTN-LLQMMEKVQNSEIPGKEPFSEKM 467
           L +ISK  T L  +P  ++  E+   +DN + ++ N  +  + K+++S       F  K 
Sbjct: 95  LEVISKAKTPLPLDPTGKVKAELDTRLDNRFMDLRNPRVMSIFKIRSSVFRATREFFYKE 154

Query: 468 GVEGIQIRTEDKCGSATE 521
           G   I+I T     +ATE
Sbjct: 155 GF--IEIHTPKIIATATE 170

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>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi|
            complex-associated protein of 170 kDa) (GCP170)
          Length = 1498

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
 Frame = +3

Query: 75   KQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRK-HEGTTSETQ 251
            K+Q   +++EA   R H  A     ++ K E+   E + + + +E    +  EG  S+  
Sbjct: 1192 KEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEI 1251

Query: 252  SATETVRAEIYSLLNLISKKVTE-LKAEP-KPRISDEVQIHMDNIYREVTNL---LQMME 416
            +  +   AE  + L L+ K++ E L  +P   +  + ++  +D   RE+ +L   L + E
Sbjct: 1252 AQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTE 1311

Query: 417  KVQNSEIPGKEPFSEKMGVEGIQIRTED 500
            +    E+ G +   + +  E +++  ED
Sbjct: 1312 QQGRKELEGLQQLLQNVKSE-LEMAQED 1338

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>RDRP_PMV (P20951) RNA replication protein (176 kDa protein) (ORF 1 protein)|
            [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
            Helicase (EC 3.6.1.-)]
          Length = 1547

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 258  TETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQNSEI 437
            T  ++A + +L   +++ + E KAEP P       I  ++   E  N+++ M +    EI
Sbjct: 1064 TPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHEREI 1123

Query: 438  PGKEPFSEKMGVEGIQIRTED 500
                 FSEK G     ++TED
Sbjct: 1124 -----FSEKHGHSNC-VQTED 1138

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>NCA1_YEAST (P32493) Nuclear control of ATPase messenger RNA expression|
           protein, mitochondrial precursor
          Length = 518

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/102 (21%), Positives = 51/102 (50%)
 Frame = +3

Query: 123 HAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNLI 302
           H  +L +   D+KL+  +  G+ + ++  + RR+H+     T  A+++VR+  + +L+L 
Sbjct: 90  HPVSLKTILVDSKLKFDDIRGVNKWLMEFVARRQHQRNIVLT-PASKSVRS--FHVLHLS 146

Query: 303 SKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQN 428
           S  + +L+              ++NI  E+ N   +  +V++
Sbjct: 147 STDIAKLRG-------------LENILSEIENTNDLQSRVES 175

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>SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-box protein SMC1)|
          Length = 1225

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +3

Query: 192  ENMLSEIQRRKH--------EGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRI 347
            E +L+E+Q            EG      + TE ++AE   +LN   K + + + E   + 
Sbjct: 1009 EEILNELQPNARALERYDEAEGRFEVINNETEQLKAEEKKILNQFLK-IKKKRKELFEKT 1067

Query: 348  SDEVQIHMDNIYREVT 395
             D V  H+D IYRE+T
Sbjct: 1068 FDYVSDHLDAIYRELT 1083

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>SNX4_CANAL (Q5AD77) Sorting nexin-4 (Autophagy-related protein 24)|
          Length = 630

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 32/177 (18%), Positives = 73/177 (41%), Gaps = 4/177 (2%)
 Frame = +3

Query: 27  GESGNCIGHGADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLE---MGE-TEGMKE 194
           GE+ N       I+ +  +   S+  ++KK+       S+ T+T      M E T+ ++ 
Sbjct: 17  GENTNNTPTDTTIKSKSSKSKKSKKSSSKKKNGNKISPSSTTETSDADDTMKEVTDQLES 76

Query: 195 NMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMD 374
             +++      +G   +   A +   ++     +L+      L   P+P+   E Q   +
Sbjct: 77  TQINDDNHEVDDGNKEQNVDANQIGNSDEDPTNSLL------LPVNPQPK---EPQEEKE 127

Query: 375 NIYREVTNLLQMMEKVQNSEIPGKEPFSEKMGVEGIQIRTEDKCGSATETQGSTYYE 545
           ++ +++    Q +  +Q    P + PF+  +  E + I+ + +    T     +YYE
Sbjct: 128 DLQQQLQQPQQQLASIQQEPAPIQPPFNAVVNDESLSIQQQQQQQQPTGYVDISYYE 184

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>GIDA_BACHK (Q6HAF3) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
 Frame = +3

Query: 45  IGH--GADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEG---MKENMLSE 209
           +GH  G   + R ++ TN +++  +++   +++I  P     E+    G   +K+ + + 
Sbjct: 451 VGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIKPRPEVQELIRNIGGSELKDGIRAS 510

Query: 210 IQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYRE 389
              R+ E T               Y  ++L+     EL  E K ++  E+QI  +    +
Sbjct: 511 DLLRRPEMT---------------YEHIHLLVPSEVELSDEVKEQV--EIQIKYEGYIEK 553

Query: 390 VTNLLQMMEKVQNSEIP 440
               ++ M+K++N +IP
Sbjct: 554 SLQQVERMKKMENKKIP 570

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>GIDA_BACAN (Q81JH3) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
 Frame = +3

Query: 45  IGH--GADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEG---MKENMLSE 209
           +GH  G   + R ++ TN +++  +++   +++I  P     E+    G   +K+ + + 
Sbjct: 451 VGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIKPRPEVQELIRNIGGSELKDGIRAS 510

Query: 210 IQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYRE 389
              R+ E T               Y  ++L+     EL  E K ++  E+QI  +    +
Sbjct: 511 DLLRRPEMT---------------YEHIHLLVPSEVELSDEVKEQV--EIQIKYEGYIEK 553

Query: 390 VTNLLQMMEKVQNSEIP 440
               ++ M+K++N +IP
Sbjct: 554 SLQQVERMKKMENKKIP 570

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>CCD93_RAT (Q5BJT7) Coiled-coil domain-containing protein 93|
          Length = 629

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
 Frame = +3

Query: 81  QETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSAT 260
           +++ +E    KK   AA L +A      E  E +  +E  +  +  +       E++   
Sbjct: 213 RQSKTEKAEDKKTALAAGLSAAEKTDAHEEDELQAAEEQRIQSLMTKMTAMANEESRLTA 272

Query: 261 ETV-------RAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIY---REVTNLLQM 410
            +V        AEI  +++    K +EL AE  P      Q+H   +    +++    + 
Sbjct: 273 SSVGQIVGLCSAEIKQIVSEYEGKQSELSAEESPEKLGTSQLHQRKVISLNKQILQKTKH 332

Query: 411 MEKVQNSEIPGKEPFSEK 464
           +E++Q +    +  +S+K
Sbjct: 333 LEELQANHTSLQAKYSDK 350

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>LAM0_DROME (P08928) Lamin Dm0|
          Length = 622

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
 Frame = +3

Query: 225 HEGTTSETQSATETVR-AEIYSLLNLISK------KVTELKAEPKPRISDEVQIHMDNIY 383
           H  T S   S T   R AE   L NL  +      +V  L+ E   R++ EVQ   D + 
Sbjct: 36  HSQTASSPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETE-NSRLTIEVQTTRDTVT 94

Query: 384 REVTNLLQMMEKV---------------QNSEIPGKEPFSEKMGVEGIQIRTEDKCGSAT 518
           RE TN+  + E                   +EI  K  + E    E ++ + + K    T
Sbjct: 95  RETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEEN---EELKNKLDKKTKECT 151

Query: 519 ETQGST-YYEYRLNAIFNGLNQ 581
             +G+   YE R N + N  NQ
Sbjct: 152 TAEGNVRMYESRANELNNKYNQ 173

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>CAGA_HELPJ (Q9ZLT1) Cytotoxicity-associated immunodominant antigen (120 kDa|
           protein) (CAG pathogenicity island protein 26)
          Length = 1167

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/117 (16%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
 Frame = +3

Query: 90  NSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSATETV 269
           N  +  AK  G+   +  A  D +  + + E +++++   ++ +       E +S   + 
Sbjct: 596 NKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQ 655

Query: 270 RAEIYSLLNLISKKVTE--LKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQNSE 434
           + EI++L+N  + +       A+    I  E+   ++NI +++ +  +  ++ +N +
Sbjct: 656 KDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGK 712

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>NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilament light|
           polypeptide) (NF-L)
          Length = 555

 Score = 26.9 bits (58), Expect(2) = 4.2
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 81  QETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSAT 260
           QE   EIE   +   A    +AP +   E  + EG +E    E    + EG   E++   
Sbjct: 449 QEEQIEIEETIEAAKAGEAKAAPAEEGEEEEKEEGEEEEAGGEEAEEEEEGAKEESEEGK 508

Query: 261 E 263
           E
Sbjct: 509 E 509



 Score = 21.9 bits (45), Expect(2) = 4.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 383 QRGDEFAADDGESAEQ 430
           + G+E AA+DGE +++
Sbjct: 513 EEGEETAAEDGEESQE 528

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>LAMC2_HUMAN (Q13753) Laminin gamma-2 chain precursor (Laminin 5 gamma 2 subunit)|
            (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t
            chain) (Cell-scattering factor 140 kDa subunit) (CSF 140
            kDa subunit) (Large adhesive scatter factor 140 kDa
            subunit)
          Length = 1193

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +3

Query: 174  ETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISD 353
            ETE   +  LS +++  HEG  S + S    V   +  L+  + K  T+  A+   R + 
Sbjct: 781  ETEDYSKQALSLVRKALHEGVGSGSGSPDGAV---VQGLVEKLEK--TKSLAQQLTREAT 835

Query: 354  EVQIHMDNIYREVTNLLQMMEKVQ 425
            + +I  D  Y+    LL  + ++Q
Sbjct: 836  QAEIEADRSYQHSLRLLDSVSRLQ 859

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>NOL6_MOUSE (Q8R5K4) Nucleolar protein 6 (Nucleolar RNA-associated protein)|
           (Nrap)
          Length = 1141

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 177 TEGMKENMLSEIQRRKHEGTTSETQSATETVR-AEIYSLLNLISKKVTELKAEPKPRISD 353
           TE   E +L  +   + E     T      +R  EI     L+  +V EL  E   R+S+
Sbjct: 40  TEPPAEGLLQPVNLSREELYKEPTNEELNRLRETEILFHSTLLRLQVEELLKEV--RLSE 97

Query: 354 EVQIHMDNIYREVTNLLQMMEKVQNSEI 437
           + +  +DN  +EVT  +Q +  V  +E+
Sbjct: 98  KKKERIDNFLKEVTKRIQKVPPVPEAEL 125

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>ITC1_YEAST (P53125) Imitation switch two complex protein 1|
          Length = 1264

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
 Frame = +3

Query: 78  QQETNSEIEAAKKRGHAAALISAPTDTKLEMGETE-GMKENMLSEIQRRKHEGTTSETQS 254
           + E N     +  + + +   S   +TK +   TE    EN  SE  ++K +  TSET S
Sbjct: 290 ESEKNKRQSKSSGKSNTSNDASNKKETKKKRKPTEVNDSENNSSEEDKKKGQNVTSETHS 349

Query: 255 ATETVRAEIYSLLNLISKKVTELKAEPK----PRISDEVQI---HMDNIYREVTNLLQMM 413
                 A        +    T   AEP+      I D++ +   H  NI+  +T   + +
Sbjct: 350 KKRKKEANEEPNTENVESVPTPANAEPQAVTITSIMDDLALPYQHPPNIFPNLTYYNEKL 409

Query: 414 EKVQNSEIPGKEPF 455
           E +         PF
Sbjct: 410 ECISLGSTKLSRPF 423

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>CLMN_MOUSE (Q8C5W0) Calmin|
          Length = 1052

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
 Frame = +3

Query: 12  HEGNTGESGNCIGHGADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLE------MG 173
           HE   GE      H     +RK +   +E EAA+ R     L   P D + E        
Sbjct: 597 HEKTRGEEEGSENHAEKPGKRKSKSPRAETEAAESRLEPKKLEPPPKDPEQEDQGHALPP 656

Query: 174 ETEGMKENMLSEIQRRKHEGTTSETQSATET 266
           ET   K+  + E  +RK     SE +   E+
Sbjct: 657 ETPADKKPKVYEKAKRKSTRHHSEEEGEAES 687

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>NUF2_YEAST (P33895) Myosin-like protein NUF2 (Nuclear filament-containing|
           protein 2) (Nuclear division protein NUF2)
          Length = 451

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
 Frame = +3

Query: 177 TEGMKENMLSEIQRRK-------HEGTTSETQSATETVRAEIYSLLNLISKKV------- 314
           +EG+KE     IQR+K        +    +T +  ET+ +E+Y +L +IS +V       
Sbjct: 256 SEGIKELNDLLIQRKKTLDDLTAQQKNLQDTVTTFETIISELYDVLRIISSEVQESNRTE 315

Query: 315 TELKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQNSEIPGKEPFSEKMGVEG----- 479
           TEL    +  I++++++ M+ +   +   L+++++  + ++   E  S+    E      
Sbjct: 316 TELVGLKQNLINNKLKL-MNVLETGIMYKLEILQEQLDLQLKNLEKLSQDTKEESRLNDT 374

Query: 480 ----IQIRTEDKCGSATETQGSTYYEYRLNAIFNGLNQLCTQLDQ 602
               +QI+ E++     +       E  ++   N LN    QL +
Sbjct: 375 KLMDLQIKYENEIKPKIDKTDIFIQEELISGKINKLNDEIKQLQK 419

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>K1C19_POTTR (P51856) Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19)|
           (Keratin-19) (K19)
          Length = 401

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
 Frame = +3

Query: 75  KQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKH-EGTTSETQ 251
           K  E N E+       H   L ++ T+        +G++  + S++  +   EGT +ET+
Sbjct: 274 KTDELNQEVAV-----HTKLLQTSKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE 328

Query: 252 SATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMD---NIYREVTNLLQMME 416
           +      ++I +L++ I  ++++++A+ + R + E  + MD    + RE+     ++E
Sbjct: 329 ARYGVQLSQIQALISNIESQLSDIRADME-RQNQEYLLLMDIKSRLEREIATYRSLLE 385

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>ISPE_BACHD (Q9KGK0) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 287

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
 Frame = +3

Query: 273 AEIYSLLNL--ISKKVTE-LKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQNSEIPG 443
           A++Y  LN+  I    TE + A  + +  D +  H+ N+   VT  L +  +V+N +   
Sbjct: 178 ADVYKRLNVSAIDHPTTEHMIAAIEGKDFDGICHHLHNVLESVT--LDLYPEVRNIKEQM 235

Query: 444 KEPFSEKMGVEGIQIRTEDKCGSATETQGSTYYEYRLNAIFNGLNQLCTQL 596
           K     + G +G+ +      GS     G    E R+  I+NGL   C Q+
Sbjct: 236 K-----RFGADGVLMS-----GSGPTVFGLVSKESRVQRIYNGLRGFCHQV 276

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>YGHB_ECOLI (P0AA60) Inner membrane protein yghB|
          Length = 219

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 520 SVADPHLSSVLIWIPSTPIFSENGSLP 440
           ++ADPH+ SV+ ++    +F ENG LP
Sbjct: 18  ALADPHIVSVVYFVMFATLFLENGLLP 44

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>YGHB_ECOL6 (P0AA61) Inner membrane protein yghB|
          Length = 219

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 520 SVADPHLSSVLIWIPSTPIFSENGSLP 440
           ++ADPH+ SV+ ++    +F ENG LP
Sbjct: 18  ALADPHIVSVVYFVMFATLFLENGLLP 44

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>YGHB_ECO57 (P0AA62) Inner membrane protein yghB|
          Length = 219

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 520 SVADPHLSSVLIWIPSTPIFSENGSLP 440
           ++ADPH+ SV+ ++    +F ENG LP
Sbjct: 18  ALADPHIVSVVYFVMFATLFLENGLLP 44

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>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
 Frame = +3

Query: 72   RKQQETNSEIEAAKKRGHAAALISAP-----TDTKLEMGETEGMKENMLSEIQRRKHEGT 236
            +++Q  ++E+E  KK         A      T  +L++ ET+  K  +  E+QR K E T
Sbjct: 2298 KQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVT 2357

Query: 237  TSETQSATETVRAEIYSL---LNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQ 407
             +  Q +   V  E++S+   +  + K    ++AE +  I  +       +  E   + Q
Sbjct: 2358 EAARQRS--QVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQ 2415

Query: 408  MMEKVQNSEIPGKE 449
            + E+     +  +E
Sbjct: 2416 VAEEAARLSVAAQE 2429

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>RASA2_RAT (Q63713) Ras GTPase-activating protein 2 (GAP1m)|
          Length = 847

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 20/177 (11%)
 Frame = +3

Query: 126 AAALISAPT---DTKLEMGETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLN 296
           AAAL  AP      + E G+ +  +  +L  ++ R +E            +R + +  +N
Sbjct: 8   AAALTEAPAVPGTAEPETGDEDSREVRVLQSLRGRIYEAKNLLPYLGPNKMR-DCFCTIN 66

Query: 297 LISKKVTELKAEPK---PRISDEVQIHMDNIYREVTNLLQMMEKVQNSEIPGKEPFSEKM 467
           L  ++V   +   K   P  S+E        Y E+    Q +    +  +  K      +
Sbjct: 67  LDQEEVYRTQVVEKSLSPYFSEE-------FYFEIPRTFQYL----SFYVYDKNVLQRDL 115

Query: 468 GVEGIQIRTEDKCG--------------SATETQGSTYYEYRLNAIFNGLNQLCTQL 596
            +  + I+ ED C               S +E QG  + E +LN +      +C QL
Sbjct: 116 RIGKVAIKKEDLCSHSGKETWFSLQPIDSNSEVQGKVHLELKLNELITENGTVCQQL 172

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>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
 Frame = +3

Query: 72   RKQQETNSEIEAAKKRGHAAALISAP-----TDTKLEMGETEGMKENMLSEIQRRKHEGT 236
            +++Q  ++E+E  KK         A      T  +L++ ET+  K  +  E+QR K E T
Sbjct: 2084 KQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVT 2143

Query: 237  TSETQSATETVRAEIYSL---LNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQ 407
             +  Q +   V  E++S+   +  + K    ++AE +  I  +       +  E   + Q
Sbjct: 2144 EAARQRS--QVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQ 2201

Query: 408  MMEKVQNSEIPGKE 449
            + E+     +  +E
Sbjct: 2202 VAEEAARLSVAAQE 2215

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>GIDA_MYCPU (Q98QV8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 611

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
 Frame = +3

Query: 255 ATETVRAEIYSLLNLIS--KKVTELKAEPKPRISD-------EVQIHMDNIYREVTNLLQ 407
           +++T  A+ Y + N IS  + +T    EP   I D        +QI ++   ++  N   
Sbjct: 484 SSKTDFAQKYKIENGISYFQALTRPDIEPSDLIKDFEFLNEMTIQIRLEGYIKKQNNAAA 543

Query: 408 MMEKVQNSEIPGKEPFSE 461
            ME+++N +IP K  +S+
Sbjct: 544 KMERLENLKIPEKIDYSQ 561

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>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687|
          Length = 1237

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 430  ARFRAKSHSRRRWVWKGSRLGLKTSVDQQPRRRGRPTTNTD*MQSSTG 573
            +R R  SH +RR V K S LGL    ++ P  R  P      + +S G
Sbjct: 1151 SRHRFISHKKRRGVGKASALGLGDGEEEAPPSRSDPDGGDSPLPASGG 1198

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>RABX5_MOUSE (Q9JM13) Rab5 GDP/GTP exchange factor (Rabex-5)|
          Length = 491

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 7/173 (4%)
 Frame = +3

Query: 9   GHEGNTGESGNCIG------HGADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEM 170
           G+ GN    G C        H A   R++Q + + E+    +R    A  S+ +      
Sbjct: 24  GYYGNPAWQGFCSKCWREEYHKA---RQRQIQEDWELAERLQREEEEAFASSQS------ 74

Query: 171 GETEGMKENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRIS 350
             ++G +    S+ + +K    T+E      TV+    +     SKK  +    P P I+
Sbjct: 75  --SQGAQSLTFSKFEEKK----TNEKTRKVTTVKKFFSASSRAGSKKEIQEAKAPSPSIN 128

Query: 351 DEVQIHMDNIYREVTNLLQMMEKVQNSEIPGKEPFSEKMGVE-GIQIRTEDKC 506
            +  I  D + +E  + L+   K         + F E M  +  + I  + +C
Sbjct: 129 RQTSIETDRVTKEFIDFLKTFHKTGQEVYKQTKMFLEAMPYKRDLSIEEQSEC 181

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>K1C19_BOVIN (P08728) Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19)|
           (Keratin-19) (K19)
          Length = 399

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
 Frame = +3

Query: 81  QETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKH-EGTTSETQSA 257
           +E N E+      GH   L  + T+        +G++  + S++  +   EGT +ET++ 
Sbjct: 275 EELNREVA-----GHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEAR 329

Query: 258 TETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMD---NIYREVTNLLQMME 416
                A+I +L++ I  ++++++A+ + R + E Q  MD    + +E+     ++E
Sbjct: 330 FGAQLAQIQALISGIEAQLSDVRADTE-RQNQEYQHLMDIKTRLEQEIATYRNLLE 384

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>CF060_HUMAN (Q8NB25) Protein C6orf60|
          Length = 1020

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
 Frame = +3

Query: 75  KQQETNSEIEAAKKR------------GHAAALISAPTDTKLEMGETEGMKENMLSEIQR 218
           K +E  SE+ AA++R             H   L +     ++ + + E  K  +   + +
Sbjct: 237 KHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQ 296

Query: 219 RKHEGT--TSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYREV 392
            + E     S+TQS  E  + +I  L     KKV E K   +     E++     +  EV
Sbjct: 297 LEEERAFLRSKTQSLDEEQKQQILEL----EKKVNEAKRTQQEYYERELKNLQSRLEEEV 352

Query: 393 TNLLQMMEK 419
           T L +   K
Sbjct: 353 TQLNEAHSK 361

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>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
 Frame = +3

Query: 57   ADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGT 236
            + +Q   +   +  + + ++R   +A  S  TD + +  E E       S + R    G+
Sbjct: 2582 SSVQTDDEDGESRYLLSRRRRARRSADCSVQTDDE-DSAEWEQPVRRRRSRLPRHSDSGS 2640

Query: 237  ------TSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYR-EVT 395
                  T+ + SA  TVRA     +  IS    + + +  PR+S  + I      + E+ 
Sbjct: 2641 DSKHDATASSSSAAATVRAMSSVGIQTISDCSVQTEPDQLPRVSPAIHITAATDPKVEIV 2700

Query: 396  NLLQMMEKVQNSEIPG--KEPFSEKMGVEGIQI 488
              +   EK    E      EP  +  GV G Q+
Sbjct: 2701 RYISAPEKTGRGESLACQTEPDGQAQGVAGPQL 2733

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>GIDA_BACLD (Q65CN2) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 628

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 34/148 (22%), Positives = 61/148 (41%)
 Frame = +3

Query: 30  ESGNCIGHGADIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSE 209
           E G  IG  ++ + +K QE  + IEA KKR H  ++I  PT            KEN   E
Sbjct: 450 EIGYQIGLISEERYQKFQEKKAAIEAEKKRLH--SVIIKPT------------KEN--QE 493

Query: 210 IQRRKHEGTTSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYRE 389
             R        +   AT+ ++    +   + +    E K         E+QI  +    +
Sbjct: 494 YIRSLGGSELKDGIRATDLMKRPEMNYETVTALAPPEQKVAGDVAEQVEIQIKYEGYIEK 553

Query: 390 VTNLLQMMEKVQNSEIPGKEPFSEKMGV 473
               ++ ++K++N +IP +  +    G+
Sbjct: 554 SLQQVEKLKKMENKKIPDRIDYDAIKGI 581

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>ENPL_MOUSE (P08113) Endoplasmin precursor (Heat shock protein 90 kDa beta|
           member 1) (94 kDa glucose-regulated protein) (GRP94)
           (ERP99) (Polymorphic tumor rejection antigen 1) (Tumor
           rejection antigen gp96)
          Length = 802

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +3

Query: 72  RKQQETNSEIEAAKKRGHAAALISAPTDTKL--EMGETEGMK-ENMLSEIQRRKHEGTTS 242
           RK+ E++  +E   K+G+    ++ P D      + E +G + +N+  E  +      T 
Sbjct: 546 RKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTK 605

Query: 243 ETQSATETVRAEIYSLLNLISKKVTELKAE 332
           E++ ATE    E   LLN +  K  + K E
Sbjct: 606 ESREATE---KEFEPLLNWMKDKALKDKIE 632

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>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa|
            Golgi complex-associated protein) (GCP372)
          Length = 3259

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 25/152 (16%)
 Frame = +3

Query: 96   EIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHE--------------- 230
            EIE+ K   H A + +     KLE  + +      L E+Q +  E               
Sbjct: 1352 EIESLKTVSHEAEVHAESLQQKLESSQLQIAGLEHLRELQPKLDELQKLISKKEEDVSYL 1411

Query: 231  -GTTSETQSATETVRAEIYSLLNLISKKVTELKAEPK---PRISD------EVQIHMDNI 380
             G  SE ++A   ++ EI    +LI    T+L+ + K    RI        E++   + I
Sbjct: 1412 SGQLSEKEAALTKIQTEIIEQEDLIKALHTQLEMQAKEHDERIKQLQVELCEMKQKPEEI 1471

Query: 381  YREVTNLLQMMEKVQNSEIPGKEPFSEKMGVE 476
              E     Q+  K+Q + I  KE   E   ++
Sbjct: 1472 GEESRAKQQIQRKLQAALISRKEALKENKSLQ 1503

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>YQY1_CAEEL (Q09560) Hypothetical protein F36G3.1|
          Length = 964

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 153 DTKLEMGETEGMKENMLSEIQRR---KHEGTTSETQSATETVRAEIYSLLNLISKKVTEL 323
           DT + + +T   +E    E +R+   + E  TSE  S+ + +   +  L N +  K+TE+
Sbjct: 157 DTPIVIEDTREFEETYSEEDERQTPIQMENATSEVSSSEDEISDSVVELTNDMMSKITEI 216

Query: 324 K 326
           +
Sbjct: 217 E 217

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>FLAC_METVO (O06636) Putative flagella-related protein C|
          Length = 188

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = +3

Query: 135 LISAPTDTKLEMGETEGM--KENMLSEIQRRKHEGTTSETQSATETVRAEIYSLLNLISK 308
           L++A  +   +MGE E    K  M+    R+++E   S+  +  E  + ++ +L  ++S 
Sbjct: 50  LVAANEELLAKMGELESKFPKIEMMVTNLRKENENLRSDIHNINENFQ-DMMALYEVVSN 108

Query: 309 KVTELKAEPKPRISDEVQIHMDNIYREVTNLLQMMEKVQNSEI 437
           ++       K   +   ++  + I  E TNL + +E++QN  +
Sbjct: 109 QINPFIGISKVTATSMEKV--EKIEHESTNLKKRVEELQNDVV 149

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>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 635

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 27/121 (22%), Positives = 47/121 (38%)
 Frame = +3

Query: 60  DIQRRKQQETNSEIEAAKKRGHAAALISAPTDTKLEMGETEGMKENMLSEIQRRKHEGTT 239
           DIQ    QE   EI +      A   I   +D  L           +LSE+ +   E   
Sbjct: 292 DIQISIGQEVEGEIVSIVSSNEAYVNIGYKSDAIL-----------LLSEVTKDNDEDIN 340

Query: 240 SETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQMMEK 419
           +  +              ++I  K+ +L +E KP +   ++++ +N Y E+    +  EK
Sbjct: 341 NFVKKG------------DIIKGKIIKLGSENKPPVISVIELNRENAYVELKEAFENKEK 388

Query: 420 V 422
           V
Sbjct: 389 V 389

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>ENPL_RABIT (O18750) Endoplasmin (Heat shock protein 90 kDa beta member 1) (94|
           kDa glucose-regulated protein) (GRP94) (Fragment)
          Length = 716

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +3

Query: 72  RKQQETNSEIEAAKKRGHAAALISAPTDTKL--EMGETEGMK-ENMLSEIQRRKHEGTTS 242
           RK+ E++  +E   K+G+    ++ P D      + E +G + +N+  E  +      T 
Sbjct: 465 RKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTK 524

Query: 243 ETQSATETVRAEIYSLLNLISKKVTELKAE 332
           E++ ATE    E   LLN +  K  + K E
Sbjct: 525 ESREATE---KEFEPLLNWMKDKALKDKIE 551

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>TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-related|
           protein 6)
          Length = 581

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
 Frame = +3

Query: 237 TSETQSATETVRAEIYSLLNLISKKVTELKAEPKPRISDEVQIHMDNIYREVTNLLQMME 416
           TS  QS+ +T    + S L+     +     E    +  E+ +H++NI+    N  Q +E
Sbjct: 2   TSHRQSS-DTFGGILPSTLSSRYLSIVNQLPEEFSSVVSEMMVHLENIFSLAENFFQAIE 60

Query: 417 KVQNS-EIPGKEPFSEKMGVEG----IQIRTEDKCGSATETQGSTYYE 545
           +   + ++  +   S  +G EG      +  E   GSA  T+ S   E
Sbjct: 61  RFSRTPDLLERNKMSIGVGAEGDSWPCHVSHEAPMGSAQTTENSAKEE 108

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>CHMP3_XENLA (Q6NRM7) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 219

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 26/138 (18%)
 Frame = +3

Query: 60  DIQRRKQQETNSEIEAAKKRGHAAALISAP--TDTKLEMGETEGMKENMLSEIQRRKHE- 230
           DIQR +++   S  E+AKK    A +I A     +K  + +    K +M S +   K++ 
Sbjct: 35  DIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQL 94

Query: 231 ---GTTSETQSATETVRA--------EIYSLLNLISKKV------------TELKAEPKP 341
                +   Q +TE ++A        EI + +  +SK++            T    E + 
Sbjct: 95  AVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQD 154

Query: 342 RISDEVQIHMDNIYREVT 395
            + ++ ++ +D I  EVT
Sbjct: 155 EMEEQAEMEIDRILFEVT 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,402,416
Number of Sequences: 219361
Number of extensions: 1414802
Number of successful extensions: 5078
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 4878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5075
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result