ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL7A_ICTPU (Q90YW2) 60S ribosomal protein L7a 32 2.2
2ARS_PSEAE (P51691) Arylsulfatase (EC 3.1.6.1) (AS) (Aryl-sulfate... 30 4.9
3SDC2_XENLA (P49414) Syndecan-2 precursor (SYND2) (Xsyn-2) 30 6.4
4RL7A_FUGRU (O57592) 60S ribosomal protein L7a (Surfeit locus pro... 30 8.3

>RL7A_ICTPU (Q90YW2) 60S ribosomal protein L7a|
          Length = 265

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 370 PHVARYSEKVCQL*PIFQTSDV---VTQQHAPE*QACKIITWDRY*RLKREGSILHK 531
           P VA+  E    + P+F+       + Q   P+    + + W RY RL+R GSIL+K
Sbjct: 15  PSVAKKHEVKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRHGSILYK 71



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>ARS_PSEAE (P51691) Arylsulfatase (EC 3.1.6.1) (AS) (Aryl-sulfate|
           sulphohydrolase)
          Length = 535

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 490 RY*RLKREGSILHKLCTVIVLTPTI 564
           RY RL R+G+I H   TV+ +TPT+
Sbjct: 389 RYPRLSRQGAISHAFATVMDVTPTL 413



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>SDC2_XENLA (P49414) Syndecan-2 precursor (SYND2) (Xsyn-2)|
          Length = 191

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 372 GSFPIDDDHFI*ESFTGFVRSISEEDENVLAKRPQKLL 259
           G++P+DDD +   S +G      +EDENV+    Q L+
Sbjct: 37  GNYPVDDDDYSSGSGSGIPARGDDEDENVVLTTVQTLI 74



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>RL7A_FUGRU (O57592) 60S ribosomal protein L7a (Surfeit locus protein 3)|
          Length = 265

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 370 PHVARYSEKVCQL*PIFQTSDV---VTQQHAPE*QACKIITWDRY*RLKREGSILHK 531
           P VA+  E    + P+F+       + Q   P+    + + W RY RL+R+ SIL+K
Sbjct: 15  PSVAKKHEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYK 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,661,068
Number of Sequences: 219361
Number of extensions: 2128353
Number of successful extensions: 4824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4823
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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