Clone Information

BLAST Search Result

Clone Name	rbaal9m23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_463125.1\| Oryza sativa (japonica cultivar-group), mRNA	190	4e-45
2	dbj\|AK059397.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	190	4e-45
3	gb\|AY105239.1\| Zea mays PCO124426 mRNA sequence	174	2e-40
4	gb\|AC133860.5\| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom...	135	2e-28
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	135	2e-28
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
7	dbj\|AK111563.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
8	dbj\|AK073739.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
9	dbj\|AK060866.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
10	gb\|CP000002.2\| Bacillus licheniformis ATCC 14580, complete genome	42	2.3
11	gb\|AE017333.1\| Bacillus licheniformis DSM 13, complete genome	42	2.3
12	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
13	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
14	dbj\|AP004689.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
15	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
16	emb\|AL772426.5\|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310...	42	2.3
17	gb\|AC145909.3\| Gallus gallus BAC clone CH261-43H20 from chromoso...	42	2.3
18	emb\|AL672286.9\| Mouse DNA sequence from clone RP23-48B17 on chro...	42	2.3
19	gb\|BC072578.1\| Mus musculus mitogen activated protein kinase 8 i...	40	9.0
20	gb\|AE017355.1\| Bacillus thuringiensis serovar konkukian str. 97-...	40	9.0
21	emb\|CR388389.9\| Zebrafish DNA sequence from clone DKEYP-69H1 in ...	40	9.0
22	gb\|AC151281.3\| Mus musculus BAC clone RP24-144E8 from chromosome...	40	9.0
23	emb\|AL137077.31\| Human DNA sequence from clone RP11-11M20 on chr...	40	9.0
24	emb\|AL031056.1\|HS111D6 Human DNA sequence from clone RP1-111D6 o...	40	9.0
25	emb\|BX571857.1\| Staphylococcus aureus strain MSSA476, complete g...	40	9.0
26	emb\|CR735103.4\| Zebrafish DNA sequence from clone CH211-13L14 in...	40	9.0
27	gb\|AC080011.22\| Homo sapiens 12 BAC RP11-316A16 (Roswell Park Ca...	40	9.0
28	ref\|NM_053777.1\| Rattus norvegicus mitogen activated protein kin...	40	9.0
29	gb\|AF332076.1\| Mus musculus strain ILS protein kinase mitogen-ac...	40	9.0
30	gb\|AF332075.1\| Mus musculus strain ISS protein kinase mitogen-ac...	40	9.0
31	dbj\|AK147033.1\| Mus musculus 13 days embryo liver cDNA, RIKEN fu...	40	9.0
32	gb\|AF108959.1\| Rattus norvegicus islet-brain 1 (IB1) mRNA, compl...	40	9.0
33	gb\|AC022821.9\| Homo sapiens chromosome 8, clone RP11-51M18, comp...	40	9.0
34	gb\|AC162801.2\| Mus musculus BAC clone RP24-65E6 from chromosome ...	40	9.0
35	gb\|AF054611.1\|AF054611 Mus musculus JNK interacting protein-1b (...	40	9.0
36	gb\|AC016879.6\| Homo sapiens chromosome 8, clone RP11-97P19, comp...	40	9.0
37	dbj\|AB221603.1\| Mus musculus cDNA pooled tissues:(tissue_type=br...	40	9.0
38	gb\|AC083982.13\| Homo sapiens chromosome 8, clone RP11-520P18, co...	40	9.0
39	dbj\|BA000033.2\| Staphylococcus aureus subsp. aureus MW2 DNA, com...	40	9.0
40	dbj\|BS000205.2\| Pan troglodytes chromosome 22 clone:RP43-093B21,...	40	9.0
41	emb\|BX649568.15\| Zebrafish DNA sequence from clone CH211-122A20 ...	40	9.0
42	emb\|BX005395.9\| Zebrafish DNA sequence from clone DKEY-8L13 in l...	40	9.0
43	gb\|AF109774.1\|AF109774 Rattus norvegicus JIP-2a mRNA, complete cds	40	9.0
44	gb\|AF109773.1\|AF109773 Rattus norvegicus JIP-1c mRNA, complete cds	40	9.0
45	gb\|AF109772.1\|AF109772 Rattus norvegicus JIP-1b mRNA, complete cds	40	9.0
46	gb\|AF109771.1\|AF109771 Mus musculus JIP-3 mRNA, complete cds	40	9.0
47	gb\|AF109770.1\|AF109770 Mus musculus JIP-2b mRNA, complete cds	40	9.0
48	gb\|AF109769.1\|AF109769 Mus musculus JIP-2a mRNA, complete cds	40	9.0
49	gb\|AF109768.1\|AF109768 Mus musculus JIP-1b mRNA, complete cds	40	9.0
50	gb\|AY919674.1\| Homo sapiens amyloid beta (A4) precursor protein ...	40	9.0
51	dbj\|AP001695.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.0
52	dbj\|AP001694.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.0
53	ref\|NM_011162.2\| Mus musculus mitogen activated protein kinase 8...	40	9.0
54	emb\|AL954329.7\| Zebrafish DNA sequence from clone CH211-226C11 i...	40	9.0
55	gb\|AF092450.1\|AF092450 Rattus norvegicus JIP-1 related protein (...	40	9.0
56	gb\|AF003115.1\|MMAF003115 Mus musculus JIP-1 (JIP-1) mRNA, comple...	40	9.0
57	emb\|AL731709.19\| Mouse DNA sequence from clone RP23-316M14 on ch...	40	9.0
58	dbj\|AP000141.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	40	9.0
59	dbj\|D87675.1\| Homo sapiens DNA for amyloid precursor protein, co...	40	9.0
60	dbj\|AP001442.1\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	9.0
61	dbj\|AP000088.1\| Homo sapiens genomic DNA of 21q22.1, APP related...	40	9.0

>ref|XM_463125.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1769

 Score =  190 bits (96), Expect = 4e-45
 Identities = 201/236 (85%)
 Strand = Plus / Minus

                                                                        
Query: 329  aagctttctcaaataaaatgatcgtcgtcaatggggaaagaccccacgtcgctagatatt 388
            |||||||||||||| | | |||| ||  || ||||||||||| | || ||| ||||||| 
Sbjct: 1348 aagctttctcaaatgataagatcatcaccactggggaaagactctacatcggtagatatc 1289

                                                                        
Query: 389  ctgagaaggtgtgccagctctaaccgatattccagacctcggatgtagtgacccagcaac 448
            || ||||| || ||||  |||||||  || || ||||||||||||||||||||||  | |
Sbjct: 1288 ctcagaagctgcgccaattctaacctgtactcaagacctcggatgtagtgacccaagagc 1229

                                                                        
Query: 449  atgcaccagaatagcaagcgtgcaagataatcacgtgggacagatattagaggctgaaac 508
            ||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| 
Sbjct: 1228 atgcaccagaatagcaaacgtgcaaggtaatcacggggaacagatattaggggctgaaaa 1169

                                                                    
Query: 509  gggagggaagtattctccacaagctctgcacagtcatcgtcctcacccccacgatt 564
            || ||||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1168 ggtagggatgcattctccacaagctctgcacagtcatcatcctcacccccaagatt 1113



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 610  gagtgtaccttgggggaaagagtagcaagcaaaccatgcac 650
            ||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 1069 gagtgtatcttgggggaaagagttgcaagcaaaccatgcac 1029

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>dbj|AK059397.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A10, full
           insert sequence
          Length = 837

 Score =  190 bits (96), Expect = 4e-45
 Identities = 201/236 (85%)
 Strand = Plus / Minus

                                                                       
Query: 329 aagctttctcaaataaaatgatcgtcgtcaatggggaaagaccccacgtcgctagatatt 388
           |||||||||||||| | | |||| ||  || ||||||||||| | || ||| ||||||| 
Sbjct: 560 aagctttctcaaatgataagatcatcaccactggggaaagactctacatcggtagatatc 501

                                                                       
Query: 389 ctgagaaggtgtgccagctctaaccgatattccagacctcggatgtagtgacccagcaac 448
           || ||||| || ||||  |||||||  || || ||||||||||||||||||||||  | |
Sbjct: 500 ctcagaagctgcgccaattctaacctgtactcaagacctcggatgtagtgacccaagagc 441

                                                                       
Query: 449 atgcaccagaatagcaagcgtgcaagataatcacgtgggacagatattagaggctgaaac 508
           ||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| 
Sbjct: 440 atgcaccagaatagcaaacgtgcaaggtaatcacggggaacagatattaggggctgaaaa 381

                                                                   
Query: 509 gggagggaagtattctccacaagctctgcacagtcatcgtcctcacccccacgatt 564
           || ||||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 380 ggtagggatgcattctccacaagctctgcacagtcatcatcctcacccccaagatt 325



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 610 gagtgtaccttgggggaaagagtagcaagcaaaccatgcac 650
           ||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 281 gagtgtatcttgggggaaagagttgcaagcaaaccatgcac 241

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>gb|AY105239.1| Zea mays PCO124426 mRNA sequence
          Length = 945

 Score =  174 bits (88), Expect = 2e-40
 Identities = 139/156 (89%)
 Strand = Plus / Minus

                                                                       
Query: 404 agctctaaccgatattccagacctcggatgtagtgacccagcaacatgcaccagaatagc 463
           ||||||||||| || |||||||| || |||||||||||||||| |||||||||||| |||
Sbjct: 486 agctctaaccggtactccagaccccgaatgtagtgacccagcagcatgcaccagaacagc 427

                                                                       
Query: 464 aagcgtgcaagataatcacgtgggacagatattagaggctgaaacgggagggaagtattc 523
           || ||||||||||||||||| || ||||||||||| |||||||| |||||||||| ||||
Sbjct: 426 aaacgtgcaagataatcacggggaacagatattaggggctgaaatgggagggaagcattc 367

                                               
Query: 524 tccacaagctctgcacagtcatcgtcctcaccccca 559
           |||||||| |||||||  ||||| ||||| ||||||
Sbjct: 366 tccacaagttctgcacgatcatcatcctcgccccca 331



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 607 tttgagtgtaccttgggggaaagagtagcaagcaaaccatgcacaacaga 656
           ||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 285 tttgaatgtaccttgggggaaagagtagcaagcaaaccatgaaccacaga 236

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>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
             sequence
          Length = 157397

 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                         
Query: 453   accagaatagcaagcgtgcaagataatcacgtgggacagatattagaggctgaaacggga 512
             ||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| || |
Sbjct: 27951 accagaatagcaaacgtgcaaggtaatcacggggaacagatattaggggctgaaaaggta 28010

                                                                 
Query: 513   gggaagtattctccacaagctctgcacagtcatcgtcctcacccccacgatt 564
             |||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 28011 gggatgcattctccacaagctctgcacagtcatcatcctcacccccaagatt 28062



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 610   gagtgtaccttgggggaaagagtagcaagcaaaccatgcac 650
             ||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 28106 gagtgtatcttgggggaaagagttgcaagcaaaccatgcac 28146



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                         
Query: 329   aagctttctcaaataaaatgatcgtcgtcaatggggaaagaccccacgtcgctagatatt 388
             |||||||||||||| | | |||| ||  || ||||||||||| | || ||| ||||||| 
Sbjct: 27734 aagctttctcaaatgataagatcatcaccactggggaaagactctacatcggtagatatc 27793

                                                                    
Query: 389   ctgagaaggtgtgccagctctaaccgatattccagacctcggatgtagtgaccca 443
             || ||||| || ||||  |||||||  || || ||||||||||||||||||||||
Sbjct: 27794 ctcagaagctgcgccaattctaacctgtactcaagacctcggatgtagtgaccca 27848

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                            
Query: 453      accagaatagcaagcgtgcaagataatcacgtgggacagatattagaggctgaaacggga 512
                ||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| || |
Sbjct: 22640195 accagaatagcaaacgtgcaaggtaatcacggggaacagatattaggggctgaaaaggta 22640136

                                                                    
Query: 513      gggaagtattctccacaagctctgcacagtcatcgtcctcacccccacgatt 564
                |||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 22640135 gggatgcattctccacaagctctgcacagtcatcatcctcacccccaagatt 22640084



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 610      gagtgtaccttgggggaaagagtagcaagcaaaccatgcac 650
                ||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 22640040 gagtgtatcttgggggaaagagttgcaagcaaaccatgcac 22640000



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                            
Query: 329      aagctttctcaaataaaatgatcgtcgtcaatggggaaagaccccacgtcgctagatatt 388
                |||||||||||||| | | |||| ||  || ||||||||||| | || ||| ||||||| 
Sbjct: 22640412 aagctttctcaaatgataagatcatcaccactggggaaagactctacatcggtagatatc 22640353

                                                                       
Query: 389      ctgagaaggtgtgccagctctaaccgatattccagacctcggatgtagtgaccca 443
                || ||||| || ||||  |||||||  || || ||||||||||||||||||||||
Sbjct: 22640352 ctcagaagctgcgccaattctaacctgtactcaagacctcggatgtagtgaccca 22640298

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                            
Query: 453      accagaatagcaagcgtgcaagataatcacgtgggacagatattagaggctgaaacggga 512
                ||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| || |
Sbjct: 22633224 accagaatagcaaacgtgcaaggtaatcacggggaacagatattaggggctgaaaaggta 22633165

                                                                    
Query: 513      gggaagtattctccacaagctctgcacagtcatcgtcctcacccccacgatt 564
                |||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 22633164 gggatgcattctccacaagctctgcacagtcatcatcctcacccccaagatt 22633113



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 610      gagtgtaccttgggggaaagagtagcaagcaaaccatgcac 650
                ||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 22633069 gagtgtatcttgggggaaagagttgcaagcaaaccatgcac 22633029



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                            
Query: 329      aagctttctcaaataaaatgatcgtcgtcaatggggaaagaccccacgtcgctagatatt 388
                |||||||||||||| | | |||| ||  || ||||||||||| | || ||| ||||||| 
Sbjct: 22633441 aagctttctcaaatgataagatcatcaccactggggaaagactctacatcggtagatatc 22633382

                                                                       
Query: 389      ctgagaaggtgtgccagctctaaccgatattccagacctcggatgtagtgaccca 443
                || ||||| || ||||  |||||||  || || ||||||||||||||||||||||
Sbjct: 22633381 ctcagaagctgcgccaattctaacctgtactcaagacctcggatgtagtgaccca 22633327

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>dbj|AK111563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066M24, full
            insert sequence
          Length = 1789

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 423  gacctcggatgtagtgacccagcaacatgcaccagaata 461
            ||||||||||||| || ||||||| ||||||||||||||
Sbjct: 1237 gacctcggatgtaatggcccagcatcatgcaccagaata 1199

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>dbj|AK073739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065N21, full
           insert sequence
          Length = 950

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 423 gacctcggatgtagtgacccagcaacatgcaccagaata 461
           ||||||||||||| || ||||||| ||||||||||||||
Sbjct: 395 gacctcggatgtaatggcccagcatcatgcaccagaata 357

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>dbj|AK060866.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H02, full
           insert sequence
          Length = 1035

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 423 gacctcggatgtagtgacccagcaacatgcaccagaata 461
           ||||||||||||| || ||||||| ||||||||||||||
Sbjct: 506 gacctcggatgtaatggcccagcatcatgcaccagaata 468

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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    ctttctcaaataaaatgatcg 352
              |||||||||||||||||||||
Sbjct: 335086 ctttctcaaataaaatgatcg 335106

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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    ctttctcaaataaaatgatcg 352
              |||||||||||||||||||||
Sbjct: 334897 ctttctcaaataaaatgatcg 334917

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 423      gacctcggatgtagtgacccagcaacatgcacc 455
                ||||||||||||| || ||||||| ||||||||
Sbjct: 24174851 gacctcggatgtaatggcccagcatcatgcacc 24174819

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 112      aatataaataggacgaaaattaaaccaat 140
                ||||||||||||| |||||||| ||||||
Sbjct: 18279070 aatataaataggaagaaaattataccaat 18279098

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>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0434E03
          Length = 142414

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 112    aatataaataggacgaaaattaaaccaat 140
              ||||||||||||| |||||||| ||||||
Sbjct: 101382 aatataaataggaagaaaattataccaat 101410

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 423      gacctcggatgtagtgacccagcaacatgcacc 455
                ||||||||||||| || ||||||| ||||||||
Sbjct: 24103057 gacctcggatgtaatggcccagcatcatgcacc 24103025

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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 423   gacctcggatgtagtgacccagcaacatgcacc 455
             ||||||||||||| || ||||||| ||||||||
Sbjct: 59542 gacctcggatgtaatggcccagcatcatgcacc 59510

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>gb|AC145909.3| Gallus gallus BAC clone CH261-43H20 from chromosome unknown, complete
              sequence
          Length = 213402

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 330    agctttctcaaataaaatgat 350
              |||||||||||||||||||||
Sbjct: 113977 agctttctcaaataaaatgat 113957

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>emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chromosome X, complete
             sequence
          Length = 209697

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   tttgactttacaagaactaca 206
             |||||||||||||||||||||
Sbjct: 91124 tttgactttacaagaactaca 91144

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>gb|BC072578.1| Mus musculus mitogen activated protein kinase 8 interacting protein
            1, mRNA (cDNA clone MGC:99893 IMAGE:6402485), complete
            cds
          Length = 3138

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1310 tcatcctcttcactgatgga 1291

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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 113     atataaataggacgaaaattaaac 136
               |||||||||||||||||| |||||
Sbjct: 1252083 atataaataggacgaaaaataaac 1252106

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>emb|CR388389.9| Zebrafish DNA sequence from clone DKEYP-69H1 in linkage group 17,
             complete sequence
          Length = 156972

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   aatgcccaaaacagcaactt 267
             ||||||||||||||||||||
Sbjct: 32461 aatgcccaaaacagcaactt 32480

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>gb|AC151281.3| Mus musculus BAC clone RP24-144E8 from chromosome 17, complete sequence
          Length = 171820

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 289   attttcatcctcttcactgatgga 312
             |||| |||||||||||||||||||
Sbjct: 44223 atttccatcctcttcactgatgga 44200

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>emb|AL137077.31| Human DNA sequence from clone RP11-11M20 on chromosome 20 Contains the
             5' end of the TAF4 gene for TAF4 RNA polymerase II (TATA
             box binding protein (TBP)-associated factor, 135 kDa), an
             RPL17 (ribosomal protein L17) pseudogene, the C20orf40
             gene for a novel protein similar to Pleurodeles waltlii
             RAP55 protein and two CpG islands, complete sequence
          Length = 126712

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 618   cttgggggaaagagtagcaa 637
             ||||||||||||||||||||
Sbjct: 93306 cttgggggaaagagtagcaa 93287

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>emb|AL031056.1|HS111D6 Human DNA sequence from clone RP1-111D6 on chromosome 6q24-25.2
             Contains a pseudogene similar to peripheral myelin protein
             2 (M-FABP) (PMP2)(P2, MP2, FABP8) and two novel genes,
             complete sequence
          Length = 128330

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   ctatgacctggaactccctg 233
             ||||||||||||||||||||
Sbjct: 21145 ctatgacctggaactccctg 21164

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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    ttttgactttacaagaacta 204
              ||||||||||||||||||||
Sbjct: 740450 ttttgactttacaagaacta 740469

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>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12,
             complete sequence
          Length = 126042

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   ttggcgagcacattttcatc 297
             ||||||||||||||||||||
Sbjct: 40156 ttggcgagcacattttcatc 40175

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>gb|AC080011.22| Homo sapiens 12 BAC RP11-316A16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 106902

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  atgtaacactaattttacac 173
            ||||||||||||||||||||
Sbjct: 8859 atgtaacactaattttacac 8840

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>ref|NM_053777.1| Rattus norvegicus mitogen activated protein kinase 8 interacting
            protein (Mapk8ip), mRNA
          Length = 3003

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1182 tcatcctcttcactgatgga 1163

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>gb|AF332076.1| Mus musculus strain ILS protein kinase mitogen-activated 8
           interacting protein (Prkm8ip) mRNA, complete cds
          Length = 2213

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tcatcctcttcactgatgga 312
           ||||||||||||||||||||
Sbjct: 989 tcatcctcttcactgatgga 970

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>gb|AF332075.1| Mus musculus strain ISS protein kinase mitogen-activated 8
           interacting protein (Prkm8ip) mRNA, complete cds
          Length = 2213

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tcatcctcttcactgatgga 312
           ||||||||||||||||||||
Sbjct: 989 tcatcctcttcactgatgga 970

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>dbj|AK147033.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched
            library, clone:I920089I17 product:mitogen activated
            protein kinase 8 interacting protein, full insert
            sequence
          Length = 3153

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1345 tcatcctcttcactgatgga 1326

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>gb|AF108959.1| Rattus norvegicus islet-brain 1 (IB1) mRNA, complete cds
          Length = 2947

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1120 tcatcctcttcactgatgga 1101

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>gb|AC022821.9| Homo sapiens chromosome 8, clone RP11-51M18, complete sequence
          Length = 171721

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ctccacaagctctgcacagt 542
             ||||||||||||||||||||
Sbjct: 52816 ctccacaagctctgcacagt 52797

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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   cctggaactccctgtttcct 239
             ||||||||||||||||||||
Sbjct: 88684 cctggaactccctgtttcct 88665

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>gb|AF054611.1|AF054611 Mus musculus JNK interacting protein-1b (JIP-1b) mRNA, complete cds
          Length = 2931

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1126 tcatcctcttcactgatgga 1107

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>gb|AC016879.6| Homo sapiens chromosome 8, clone RP11-97P19, complete sequence
          Length = 182556

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 523   ctccacaagctctgcacagt 542
             ||||||||||||||||||||
Sbjct: 36659 ctccacaagctctgcacagt 36678

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>dbj|AB221603.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
           days
           neonate,strain=BALB/c),(tissue_type=testis,
           dev_stage=adult, strain=C57BL/6J), clone:V01X014C07
          Length = 2125

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tcatcctcttcactgatgga 312
           ||||||||||||||||||||
Sbjct: 989 tcatcctcttcactgatgga 970

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>gb|AC083982.13| Homo sapiens chromosome 8, clone RP11-520P18, complete sequence
          Length = 173910

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 214    ctatgacctggaactccctgtttc 237
              ||||||||||||| ||||||||||
Sbjct: 120714 ctatgacctggaagtccctgtttc 120737

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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    ttttgactttacaagaacta 204
              ||||||||||||||||||||
Sbjct: 742022 ttttgactttacaagaacta 742041

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>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete
              sequences
          Length = 203521

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gcagcaacaacatgttattt 101
              ||||||||||||||||||||
Sbjct: 138798 gcagcaacaacatgttattt 138779

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>emb|BX649568.15| Zebrafish DNA sequence from clone CH211-122A20 in linkage group 18,
              complete sequence
          Length = 194885

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 323    ccagtgaagctttctcaaataaaa 346
              ||||||||||||| ||||||||||
Sbjct: 179157 ccagtgaagctttatcaaataaaa 179180

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>emb|BX005395.9| Zebrafish DNA sequence from clone DKEY-8L13 in linkage group 18,
             complete sequence
          Length = 171015

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 633   agcaagcaaaccatgcacaa 652
             ||||||||||||||||||||
Sbjct: 25509 agcaagcaaaccatgcacaa 25490

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>gb|AF109774.1|AF109774 Rattus norvegicus JIP-2a mRNA, complete cds
          Length = 3003

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1182 tcatcctcttcactgatgga 1163

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>gb|AF109773.1|AF109773 Rattus norvegicus JIP-1c mRNA, complete cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1092 tcatcctcttcactgatgga 1073

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>gb|AF109772.1|AF109772 Rattus norvegicus JIP-1b mRNA, complete cds
          Length = 2850

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1029 tcatcctcttcactgatgga 1010

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>gb|AF109771.1|AF109771 Mus musculus JIP-3 mRNA, complete cds
          Length = 2304

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tcatcctcttcactgatgga 312
           ||||||||||||||||||||
Sbjct: 987 tcatcctcttcactgatgga 968

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>gb|AF109770.1|AF109770 Mus musculus JIP-2b mRNA, complete cds
          Length = 2458

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1141 tcatcctcttcactgatgga 1122

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>gb|AF109769.1|AF109769 Mus musculus JIP-2a mRNA, complete cds
          Length = 2403

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1086 tcatcctcttcactgatgga 1067

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>gb|AF109768.1|AF109768 Mus musculus JIP-1b mRNA, complete cds
          Length = 2340

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1023 tcatcctcttcactgatgga 1004

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>gb|AY919674.1| Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II,
              Alzheimer disease) (APP) gene, complete cds
          Length = 293960

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gcagcaacaacatgttattt 101
              ||||||||||||||||||||
Sbjct: 240507 gcagcaacaacatgttattt 240526

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>dbj|AP001695.1| Homo sapiens genomic DNA, chromosome 21q, section 39/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  gcagcaacaacatgttattt 101
           ||||||||||||||||||||
Sbjct: 94  gcagcaacaacatgttattt 75

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>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gcagcaacaacatgttattt 101
              ||||||||||||||||||||
Sbjct: 339094 gcagcaacaacatgttattt 339075

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>ref|NM_011162.2| Mus musculus mitogen activated protein kinase 8 interacting protein 1
            (Mapk8ip1), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1126 tcatcctcttcactgatgga 1107

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>emb|AL954329.7| Zebrafish DNA sequence from clone CH211-226C11 in linkage group 23,
             complete sequence
          Length = 194284

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   aattaaaccaattgttcaca 148
             ||||||||||||||||||||
Sbjct: 39181 aattaaaccaattgttcaca 39162

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>gb|AF092450.1|AF092450 Rattus norvegicus JIP-1 related protein (JRP) mRNA, complete cds
          Length = 2148

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tcatcctcttcactgatgga 312
           ||||||||||||||||||||
Sbjct: 917 tcatcctcttcactgatgga 898

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>gb|AF003115.1|MMAF003115 Mus musculus JIP-1 (JIP-1) mRNA, complete cds
          Length = 2790

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tcatcctcttcactgatgga 312
            ||||||||||||||||||||
Sbjct: 1126 tcatcctcttcactgatgga 1107

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>emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on chromosome 2, complete
              sequence
          Length = 211034

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    tcatcctcttcactgatgga 312
              ||||||||||||||||||||
Sbjct: 168765 tcatcctcttcactgatgga 168784

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>dbj|AP000141.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 6/10, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    gcagcaacaacatgttattt 101
             ||||||||||||||||||||
Sbjct: 38390 gcagcaacaacatgttattt 38371

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>dbj|D87675.1| Homo sapiens DNA for amyloid precursor protein, complete cds
          Length = 301692

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gcagcaacaacatgttattt 101
              ||||||||||||||||||||
Sbjct: 244222 gcagcaacaacatgttattt 244241

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>dbj|AP001442.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T1715,
             LL56-APP region, complete sequence
          Length = 68001

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    gcagcaacaacatgttattt 101
             ||||||||||||||||||||
Sbjct: 21518 gcagcaacaacatgttattt 21499

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>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region,
              segment 5/7
          Length = 161014

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gcagcaacaacatgttattt 101
              ||||||||||||||||||||
Sbjct: 138390 gcagcaacaacatgttattt 138371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,973,876
Number of Sequences: 3902068
Number of extensions: 5973876
Number of successful extensions: 112437
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112045
Number of HSP's gapped (non-prelim): 392
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result