Clone Information

BLAST Search Result

Clone Name	bags14p12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483795.1\| Oryza sativa (japonica cultivar-group), mRNA	357	3e-95
2	ref\|XM_507343.1\| PREDICTED Oryza sativa (japonica cultivar-group...	357	3e-95
3	dbj\|AK120773.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	357	3e-95
4	dbj\|AK099629.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	357	3e-95
5	ref\|XM_483796.1\| Oryza sativa (japonica cultivar-group), mRNA	301	1e-78
6	dbj\|AK069733.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	301	1e-78
7	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	184	2e-43
8	dbj\|AP005544.3\| Oryza sativa (japonica cultivar-group) genomic D...	184	2e-43
9	dbj\|AP004587.3\| Oryza sativa (japonica cultivar-group) genomic D...	184	2e-43
10	gb\|AY104520.1\| Zea mays PCO096740 mRNA sequence	113	7e-22
11	ref\|XM_504600.1\| Yarrowia lipolytica CLIB122, YALI0E30679g predi...	42	2.2
12	gb\|AC108687.3\| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Canc...	42	2.2
13	emb\|AL670238.5\| Mouse DNA sequence from clone RP23-16J5 on chrom...	42	2.2
14	gb\|AF104898.1\|AF104898 Gadus morhua immunoglobulin light chain g...	42	2.2
15	emb\|CR382131.1\| Yarrowia lipolytica chromosome E of strain CLIB ...	42	2.2
16	gb\|AC109501.21\| Mus musculus chromosome 17, clone RP23-449E17, c...	40	8.5
17	gb\|AC125351.3\| Mus musculus BAC clone RP23-442M3 from chromosome...	40	8.5
18	gb\|DQ084724.1\| Oryctolagus cuniculus clone R428 immunoglobulin h...	40	8.5
19	emb\|AL592114.13\| Human DNA sequence from clone RP11-203F10 on ch...	40	8.5
20	emb\|AL138704.12\| Human DNA sequence from clone RP11-417C20 on ch...	40	8.5
21	emb\|AL132660.14\|HSDJ249H1 Human DNA sequence from clone RP1-249H...	40	8.5
22	emb\|BX470110.2\| Mouse DNA sequence from clone RP23-374D8 on chro...	40	8.5
23	gb\|AY766183.1\| Vaccinia virus strain ACAM1000, partial sequence	40	8.5
24	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.5
25	gb\|AC093912.2\| Homo sapiens BAC clone RP11-766E1 from 2, complet...	40	8.5
26	dbj\|AP004098.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.5
27	dbj\|AP004047.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.5
28	gb\|AC154823.2\| Mus musculus BAC clone RP24-538J1 from 17, comple...	40	8.5
29	gb\|AY900122.1\| Vigna radiata transposon Ty1/copia-like retrotran...	40	8.5

>ref|XM_483795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2439

 Score =  357 bits (180), Expect = 3e-95
 Identities = 348/404 (86%)
 Strand = Plus / Plus

                                                                        
Query: 168  tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
            |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 1343 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 1402

                                                                        
Query: 228  cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
             || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1403 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 1462

                                                                        
Query: 288  tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
            | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 1463 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 1522

                                                                        
Query: 348  tcttactcaagaggtcaacaatcccaactatacatatagtccaactcaaaaggttgtaga 407
             ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||
Sbjct: 1523 ccttactcaagaggtcaacaattcaacctatacatatagtccaactcaaaaggttttaga 1582

                                                                        
Query: 408  acctaattttgtagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagtt 467
            |||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1583 acctaattttgtagttggtgccccatcatctgctaggttacctgaagcgggtagtcagtt 1642

                                                                        
Query: 468  aaattgtgttgttttaccagattctcgggctaagaatgggtccatgggaaagcgttttgt 527
            ||||| |||||||||||||||||| | | | |||| | |    || || |||||||||||
Sbjct: 1643 aaattatgttgttttaccagattcccagaccaagagtagtctgatcgggaagcgttttgt 1702

                                                        
Query: 528  aaagatgctggattcaatctcggctccccctgcttttgcagcag 571
            |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1703 aaagatactggattcaatctctgctccccctgcttttgcagcag 1746

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>ref|XM_507343.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.48-1 mRNA
          Length = 2626

 Score =  357 bits (180), Expect = 3e-95
 Identities = 348/404 (86%)
 Strand = Plus / Plus

                                                                        
Query: 168  tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
            |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 1343 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 1402

                                                                        
Query: 228  cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
             || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1403 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 1462

                                                                        
Query: 288  tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
            | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 1463 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 1522

                                                                        
Query: 348  tcttactcaagaggtcaacaatcccaactatacatatagtccaactcaaaaggttgtaga 407
             ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||
Sbjct: 1523 ccttactcaagaggtcaacaattcaacctatacatatagtccaactcaaaaggttttaga 1582

                                                                        
Query: 408  acctaattttgtagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagtt 467
            |||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1583 acctaattttgtagttggtgccccatcatctgctaggttacctgaagcgggtagtcagtt 1642

                                                                        
Query: 468  aaattgtgttgttttaccagattctcgggctaagaatgggtccatgggaaagcgttttgt 527
            ||||| |||||||||||||||||| | | | |||| | |    || || |||||||||||
Sbjct: 1643 aaattatgttgttttaccagattcccagaccaagagtagtctgatcgggaagcgttttgt 1702

                                                        
Query: 528  aaagatgctggattcaatctcggctccccctgcttttgcagcag 571
            |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1703 aaagatactggattcaatctctgctccccctgcttttgcagcag 1746

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>dbj|AK120773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J18, full
            insert sequence
          Length = 2626

 Score =  357 bits (180), Expect = 3e-95
 Identities = 348/404 (86%)
 Strand = Plus / Plus

                                                                        
Query: 168  tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
            |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 1343 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 1402

                                                                        
Query: 228  cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
             || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1403 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 1462

                                                                        
Query: 288  tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
            | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 1463 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 1522

                                                                        
Query: 348  tcttactcaagaggtcaacaatcccaactatacatatagtccaactcaaaaggttgtaga 407
             ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||
Sbjct: 1523 ccttactcaagaggtcaacaattcaacctatacatatagtccaactcaaaaggttttaga 1582

                                                                        
Query: 408  acctaattttgtagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagtt 467
            |||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1583 acctaattttgtagttggtgccccatcatctgctaggttacctgaagcgggtagtcagtt 1642

                                                                        
Query: 468  aaattgtgttgttttaccagattctcgggctaagaatgggtccatgggaaagcgttttgt 527
            ||||| |||||||||||||||||| | | | |||| | |    || || |||||||||||
Sbjct: 1643 aaattatgttgttttaccagattcccagaccaagagtagtctgatcgggaagcgttttgt 1702

                                                        
Query: 528  aaagatgctggattcaatctcggctccccctgcttttgcagcag 571
            |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1703 aaagatactggattcaatctctgctccccctgcttttgcagcag 1746

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>dbj|AK099629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057D07, full
            insert sequence
          Length = 2439

 Score =  357 bits (180), Expect = 3e-95
 Identities = 348/404 (86%)
 Strand = Plus / Plus

                                                                        
Query: 168  tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
            |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 1343 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 1402

                                                                        
Query: 228  cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
             || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1403 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 1462

                                                                        
Query: 288  tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
            | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 1463 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 1522

                                                                        
Query: 348  tcttactcaagaggtcaacaatcccaactatacatatagtccaactcaaaaggttgtaga 407
             ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||
Sbjct: 1523 ccttactcaagaggtcaacaattcaacctatacatatagtccaactcaaaaggttttaga 1582

                                                                        
Query: 408  acctaattttgtagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagtt 467
            |||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1583 acctaattttgtagttggtgccccatcatctgctaggttacctgaagcgggtagtcagtt 1642

                                                                        
Query: 468  aaattgtgttgttttaccagattctcgggctaagaatgggtccatgggaaagcgttttgt 527
            ||||| |||||||||||||||||| | | | |||| | |    || || |||||||||||
Sbjct: 1643 aaattatgttgttttaccagattcccagaccaagagtagtctgatcgggaagcgttttgt 1702

                                                        
Query: 528  aaagatgctggattcaatctcggctccccctgcttttgcagcag 571
            |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1703 aaagatactggattcaatctctgctccccctgcttttgcagcag 1746

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>ref|XM_483796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1998

 Score =  301 bits (152), Expect = 1e-78
 Identities = 278/320 (86%)
 Strand = Plus / Plus

                                                                        
Query: 168  tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
            |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 1343 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 1402

                                                                        
Query: 228  cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
             || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1403 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 1462

                                                                        
Query: 288  tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
            | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 1463 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 1522

                                                                        
Query: 348  tcttactcaagaggtcaacaatcccaactatacatatagtccaactcaaaaggttgtaga 407
             ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||
Sbjct: 1523 ccttactcaagaggtcaacaattcaacctatacatatagtccaactcaaaaggttttaga 1582

                                                                        
Query: 408  acctaattttgtagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagtt 467
            |||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1583 acctaattttgtagttggtgccccatcatctgctaggttacctgaagcgggtagtcagtt 1642

                                
Query: 468  aaattgtgttgttttaccag 487
            ||||| ||||||||||||||
Sbjct: 1643 aaattatgttgttttaccag 1662

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>dbj|AK069733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030H12, full
            insert sequence
          Length = 1998

 Score =  301 bits (152), Expect = 1e-78
 Identities = 278/320 (86%)
 Strand = Plus / Plus

                                                                        
Query: 168  tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
            |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 1343 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 1402

                                                                        
Query: 228  cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
             || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1403 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 1462

                                                                        
Query: 288  tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
            | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 1463 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 1522

                                                                        
Query: 348  tcttactcaagaggtcaacaatcccaactatacatatagtccaactcaaaaggttgtaga 407
             ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||
Sbjct: 1523 ccttactcaagaggtcaacaattcaacctatacatatagtccaactcaaaaggttttaga 1582

                                                                        
Query: 408  acctaattttgtagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagtt 467
            |||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1583 acctaattttgtagttggtgccccatcatctgctaggttacctgaagcgggtagtcagtt 1642

                                
Query: 468  aaattgtgttgttttaccag 487
            ||||| ||||||||||||||
Sbjct: 1643 aaattatgttgttttaccag 1662

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  184 bits (93), Expect = 2e-43
 Identities = 120/129 (93%)
 Strand = Plus / Minus

                                                                            
Query: 359      aggtcaacaatcccaactatacatatagtccaactcaaaaggttgtagaacctaattttg 418
                ||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 28139056 aggtcaacaattcaacctatacatatagtccaactcaaaaggttttagaacctaattttg 28138997

                                                                            
Query: 419      tagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagttaaattgtgttg 478
                ||||||||||||| || || ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 28138996 tagttggtgccccatcatctgctaggttacctgaagcgggtagtcagttaaattatgttg 28138937

                         
Query: 479      ttttaccag 487
                |||||||||
Sbjct: 28138936 ttttaccag 28138928



 Score =  125 bits (63), Expect = 2e-25
 Identities = 162/195 (83%)
 Strand = Plus / Minus

                                                                            
Query: 168      tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
                |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 28139342 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 28139283

                                                                            
Query: 228      cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
                 || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 28139282 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 28139223

                                                                            
Query: 288      tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
                | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 28139222 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 28139163

                               
Query: 348      tcttactcaagaggt 362
                 ||||||||||||||
Sbjct: 28139162 ccttactcaagaggt 28139148



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                       
Query: 517      aagcgttttgtaaagatgctggattcaatctcggctccccctgcttttgcagcag 571
                ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 28138568 aagcgttttgtaaagatactggattcaatctctgctccccctgcttttgcagcag 28138514

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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score =  184 bits (93), Expect = 2e-43
 Identities = 120/129 (93%)
 Strand = Plus / Minus

                                                                          
Query: 359    aggtcaacaatcccaactatacatatagtccaactcaaaaggttgtagaacctaattttg 418
              ||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 136551 aggtcaacaattcaacctatacatatagtccaactcaaaaggttttagaacctaattttg 136492

                                                                          
Query: 419    tagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagttaaattgtgttg 478
              ||||||||||||| || || ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 136491 tagttggtgccccatcatctgctaggttacctgaagcgggtagtcagttaaattatgttg 136432

                       
Query: 479    ttttaccag 487
              |||||||||
Sbjct: 136431 ttttaccag 136423



 Score =  125 bits (63), Expect = 2e-25
 Identities = 162/195 (83%)
 Strand = Plus / Minus

                                                                          
Query: 168    tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
              |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 136837 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 136778

                                                                          
Query: 228    cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
               || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 136777 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 136718

                                                                          
Query: 288    tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
              | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 136717 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 136658

                             
Query: 348    tcttactcaagaggt 362
               ||||||||||||||
Sbjct: 136657 ccttactcaagaggt 136643



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                     
Query: 517    aagcgttttgtaaagatgctggattcaatctcggctccccctgcttttgcagcag 571
              ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 136063 aagcgttttgtaaagatactggattcaatctctgctccccctgcttttgcagcag 136009

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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score =  184 bits (93), Expect = 2e-43
 Identities = 120/129 (93%)
 Strand = Plus / Minus

                                                                         
Query: 359   aggtcaacaatcccaactatacatatagtccaactcaaaaggttgtagaacctaattttg 418
             ||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 22529 aggtcaacaattcaacctatacatatagtccaactcaaaaggttttagaacctaattttg 22470

                                                                         
Query: 419   tagttggtgccccgtcgtccgctaggttacctgaagctggtagtcagttaaattgtgttg 478
             ||||||||||||| || || ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 22469 tagttggtgccccatcatctgctaggttacctgaagcgggtagtcagttaaattatgttg 22410

                      
Query: 479   ttttaccag 487
             |||||||||
Sbjct: 22409 ttttaccag 22401



 Score =  125 bits (63), Expect = 2e-25
 Identities = 162/195 (83%)
 Strand = Plus / Minus

                                                                         
Query: 168   tgatggatttagacagacgaatggatttcttggctccccagcaaccattctatctggtat 227
             |||||| |||||||||   ||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 22815 tgatggttttagacagctcaatggatttcttggctccccatcgaccaatctatctggtat 22756

                                                                         
Query: 228   cgagacactggatgatggtatcccatactatgatgcaatggacgataacttatttaatga 287
              || |   |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 22755 tgacatggtggacgatggtatgccgtactatgatgcgatggatgataacttgtttaatga 22696

                                                                         
Query: 288   tatgatgtgctctgtacagcagtcggctgggagcagctcccatgtctttaatggcccagt 347
             | |  || |||| |||||||  || ||||| ||||| |||||||  |||| ||| |||||
Sbjct: 22695 tcttctgagctcagtacagccatcagctggtagcagttcccatgcttttagtgggccagt 22636

                            
Query: 348   tcttactcaagaggt 362
              ||||||||||||||
Sbjct: 22635 ccttactcaagaggt 22621



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                    
Query: 517   aagcgttttgtaaagatgctggattcaatctcggctccccctgcttttgcagcag 571
             ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 22041 aagcgttttgtaaagatactggattcaatctctgctccccctgcttttgcagcag 21987

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>gb|AY104520.1| Zea mays PCO096740 mRNA sequence
          Length = 674

 Score =  113 bits (57), Expect = 7e-22
 Identities = 111/129 (86%)
 Strand = Plus / Plus

                                                                       
Query: 451 gaagctggtagtcagttaaattgtgttgttttaccagattctcgggctaagaatgggtcc 510
           |||||||||||||||||||||||||||||||||||||||  || |||||||| | |  | 
Sbjct: 1   gaagctggtagtcagttaaattgtgttgttttaccagatggtcaggctaagagtagtact 60

                                                                       
Query: 511 atgggaaagcgttttgtaaagatgctggattcaatctcggctccccctgcttttgcagca 570
           || |||||| | ||||||| |||  ||||||| ||||| |||||||| |||||||||| |
Sbjct: 61  attggaaagggatttgtaaggattttggattcgatctctgctcccccagcttttgcagga 120

                    
Query: 571 gagttccca 579
           |||||||||
Sbjct: 121 gagttccca 129

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>ref|XM_504600.1| Yarrowia lipolytica CLIB122, YALI0E30679g predicted mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  agccagaagatgattctctga 133
            |||||||||||||||||||||
Sbjct: 1150 agccagaagatgattctctga 1130

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>gb|AC108687.3| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128821

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   agttaaattgtgttgttttac 484
             |||||||||||||||||||||
Sbjct: 94778 agttaaattgtgttgttttac 94798

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>emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chromosome X, complete
              sequence
          Length = 223392

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 114    gccagaagatgattctctgat 134
              |||||||||||||||||||||
Sbjct: 139872 gccagaagatgattctctgat 139892

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>gb|AF104898.1|AF104898 Gadus morhua immunoglobulin light chain gCL10 gene cluster, partial
            sequence
          Length = 13126

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 82   cttccatactcttctattaca 102
            |||||||||||||||||||||
Sbjct: 4417 cttccatactcttctattaca 4397

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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 113     agccagaagatgattctctga 133
               |||||||||||||||||||||
Sbjct: 3610441 agccagaagatgattctctga 3610461

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>gb|AC109501.21| Mus musculus chromosome 17, clone RP23-449E17, complete sequence
          Length = 187144

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   gatgattctctgatgttttt 140
             ||||||||||||||||||||
Sbjct: 19802 gatgattctctgatgttttt 19783

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>gb|AC125351.3| Mus musculus BAC clone RP23-442M3 from chromosome 12, complete sequence
          Length = 188024

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    tcttccatactcttctatta 100
             ||||||||||||||||||||
Sbjct: 91625 tcttccatactcttctatta 91606

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>gb|DQ084724.1| Oryctolagus cuniculus clone R428 immunoglobulin heavy chain
           variable region (VH) gene, VH-y33 allele, partial cds
          Length = 309

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 tttgcagcagagttcccagg 581
           ||||||||||||||||||||
Sbjct: 78  tttgcagcagagttcccagg 59

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>emb|AL592114.13| Human DNA sequence from clone RP11-203F10 on chromosome 1 Contains the
             5' end of the REN gene for renin, the KISS1 gene for
             KiSS-1 metastasis-suppressor, a novel gene (FLJ42654), the
             3' end of the gene for phosphoinositol 3-phosphate-binding
             protein-3 (PEPP3) and  a novel gene, complete sequence
          Length = 189023

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 557   ctgcttttgcagcagagttc 576
             ||||||||||||||||||||
Sbjct: 11994 ctgcttttgcagcagagttc 12013

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>emb|AL138704.12| Human DNA sequence from clone RP11-417C20 on chromosome 13 Contains the
             5' end of gene KIAA1016 and a CpG island, complete
             sequence
          Length = 165120

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tcttccatactcttctatta 100
             ||||||||||||||||||||
Sbjct: 76980 tcttccatactcttctatta 76999

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>emb|AL132660.14|HSDJ249H1 Human DNA sequence from clone RP1-249H1 on chromosome 6q21-22.32
             Contains part of a putative novel gene, a ribosomal
             protein L30 (RPL30) pseudogene, the MARCKS gene for
             myristoylated alanine-rich protein kinase C substrate
             (phosphomyristin, MACS, 80K-L, PKCSL, MRACKS, contains
             FLJ14368 and DKFZp564P1664), and a putative novel gene.
             Contains 2 CpG islands, complete sequence
          Length = 55113

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 115   ccagaagatgattctctgatgttttttg 142
             ||||||| ||||||||||| ||||||||
Sbjct: 37250 ccagaagttgattctctgaagttttttg 37277

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>emb|BX470110.2| Mouse DNA sequence from clone RP23-374D8 on chromosome 4, complete
              sequence
          Length = 194185

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    gagacactggatgatggtat 248
              ||||||||||||||||||||
Sbjct: 137983 gagacactggatgatggtat 137964

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>gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence
          Length = 201404

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 467   taaattgtgttgttttaccagatt 490
             |||||||||||||||| |||||||
Sbjct: 41713 taaattgtgttgtttttccagatt 41736

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 271      gataacttatttaatgatat 290
                ||||||||||||||||||||
Sbjct: 29746547 gataacttatttaatgatat 29746566

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>gb|AC093912.2| Homo sapiens BAC clone RP11-766E1 from 2, complete sequence
          Length = 194167

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    attctgtcaagccagaagat 123
              ||||||||||||||||||||
Sbjct: 112008 attctgtcaagccagaagat 112027

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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ2056_H01
          Length = 123428

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 271  gataacttatttaatgatat 290
            ||||||||||||||||||||
Sbjct: 2892 gataacttatttaatgatat 2911

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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    gataacttatttaatgatat 290
              ||||||||||||||||||||
Sbjct: 115526 gataacttatttaatgatat 115545

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>gb|AC154823.2| Mus musculus BAC clone RP24-538J1 from 17, complete sequence
          Length = 187746

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   gatgattctctgatgttttt 140
             ||||||||||||||||||||
Sbjct: 76368 gatgattctctgatgttttt 76349

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>gb|AY900122.1| Vigna radiata transposon Ty1/copia-like retrotransposon RTvr2,
            complete sequence
          Length = 8100

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  agcagctcccatgtctttaatggc 342
            |||||||||||||||||| |||||
Sbjct: 6383 agcagctcccatgtctttcatggc 6360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,462,911
Number of Sequences: 3902068
Number of extensions: 5462911
Number of successful extensions: 115160
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115040
Number of HSP's gapped (non-prelim): 111
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result