ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genom... 307 2e-80
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 307 2e-80
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 307 2e-80
4dbj|AK062981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
5gb|AY106192.1| Zea mays PCO072441 mRNA sequence 220 4e-54
6gb|BT016356.1| Zea mays clone Contig189 mRNA sequence 204 2e-49
7gb|AY389672.1| Hyacinthus orientalis unknown mRNA 82 2e-12
8gb|AY389729.1| Hyacinthus orientalis At1g67350-like protein mRNA... 82 2e-12
9gb|AY389726.1| Hyacinthus orientalis unknown mRNA 70 8e-09
10gb|AF366446.1|AF366446 Allium cepa clone AGF125 maintainer line ... 50 0.008
11gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 48 0.030
12dbj|AB189463.1| Rhodobacter sphaeroides f. sp. denitrificans tre... 48 0.030
13gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, com... 46 0.12
14gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosom... 44 0.47
15gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer... 44 0.47
16emb|AL807806.6| Mouse DNA sequence from clone RP23-67K19 on chro... 44 0.47
17emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chro... 44 0.47
18gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosom... 44 0.47
19gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosom... 44 0.47
20gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, c... 44 0.47
21emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chro... 44 0.47
22gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, compl... 44 0.47
23dbj|AK138696.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 44 0.47
24emb|BX005281.15| Mouse DNA sequence from clone RP23-268A11 on ch... 44 0.47
25emb|AL731823.19| Mouse DNA sequence from clone RP23-60B2 on chro... 44 0.47
26gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, compl... 44 0.47
27emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on ch... 44 0.47
28gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, com... 44 0.47
29gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome... 42 1.9
30gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 42 1.9
31gb|AC116993.2| Homo sapiens chromosome 1 clone RP4-561P1, comple... 42 1.9
32gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genom... 42 1.9
33gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Ca... 42 1.9
34ref|XM_882793.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 7.3
35gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, com... 40 7.3
36gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome... 40 7.3
37ref|XM_759197.1| Theileria parva strain Muguga chromosome 4 hypo... 40 7.3
38gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Ca... 40 7.3
39gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence 40 7.3
40gb|BC102654.1| Bos taurus cDNA clone IMAGE:7956015, partial cds 40 7.3
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
43ref|XM_310742.2| Anopheles gambiae str. PEST ENSANGP00000010052 ... 40 7.3
44gb|AY675212.1| Oryzias latipes hypothetical protein mRNA, partia... 40 7.3 
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete
              sequence
          Length = 121849

 Score =  307 bits (155), Expect = 2e-80
 Identities = 188/199 (94%)
 Strand = Plus / Minus

                                                                          
Query: 113    atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 172
              |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct: 105281 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 105222

                                                                          
Query: 173    gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 232
              |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 105221 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 105162

                                                                          
Query: 233    gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 292
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105161 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 105102

                                 
Query: 293    tgggacccccagatcagcc 311
              ||||| |||||||||||||
Sbjct: 105101 tgggatccccagatcagcc 105083
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  307 bits (155), Expect = 2e-80
 Identities = 188/199 (94%)
 Strand = Plus / Plus

                                                                            
Query: 113      atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 172
                |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct: 27073610 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 27073669

                                                                            
Query: 173      gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 232
                |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27073670 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 27073729

                                                                            
Query: 233      gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 292
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27073730 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 27073789

                                   
Query: 293      tgggacccccagatcagcc 311
                ||||| |||||||||||||
Sbjct: 27073790 tgggatccccagatcagcc 27073808



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 433      caaaataaggagaactcattt 453
                |||||||||||||||||||||
Sbjct: 35276091 caaaataaggagaactcattt 35276111
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  307 bits (155), Expect = 2e-80
 Identities = 188/199 (94%)
 Strand = Plus / Plus

                                                                            
Query: 113      atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 172
                |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct: 27164933 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 27164992

                                                                            
Query: 173      gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 232
                |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27164993 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 27165052

                                                                            
Query: 233      gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 292
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27165053 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 27165112

                                   
Query: 293      tgggacccccagatcagcc 311
                ||||| |||||||||||||
Sbjct: 27165113 tgggatccccagatcagcc 27165131



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 433      caaaataaggagaactcattt 453
                |||||||||||||||||||||
Sbjct: 35366163 caaaataaggagaactcattt 35366183
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>dbj|AK062981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F03, full
           insert sequence
          Length = 583

 Score =  307 bits (155), Expect = 2e-80
 Identities = 188/199 (94%)
 Strand = Plus / Plus

                                                                       
Query: 113 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 172
           |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct: 50  atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 109

                                                                       
Query: 173 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 232
           |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 110 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 169

                                                                       
Query: 233 gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 292
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 229

                              
Query: 293 tgggacccccagatcagcc 311
           ||||| |||||||||||||
Sbjct: 230 tgggatccccagatcagcc 248
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>gb|AY106192.1| Zea mays PCO072441 mRNA sequence
          Length = 708

 Score =  220 bits (111), Expect = 4e-54
 Identities = 186/211 (88%)
 Strand = Plus / Plus

                                                                       
Query: 101 atgggattcatcatggagttcgcggagaacctgatcctgcggctgatggaggacccggag 160
           ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||| 
Sbjct: 151 atgggtttcatcatggacttcgcggagaatctgatcctccgtctgatggaggacccggac 210

                                                                       
Query: 161 cagcgggacgaggcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcacc 220
            |||| ||| |||  | ||||| ||| ||||||  |||||||||||||||||||||||| 
Sbjct: 211 aagcgcgaccaggttcggcgggagcatgtctacaagatgaaggagcggtgcgagcgcact 270

                                                                       
Query: 221 aaggcggcctgggcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaac 280
           |||||||| |||   ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaggcggcgtggagcctccctctgcgcccctacggcttctggaccttcgaccgcttcaac 330

                                          
Query: 281 tcccagctctcctgggacccccagatcagcc 311
           || |||||||||||||| |||||||||||||
Sbjct: 331 tcgcagctctcctgggatccccagatcagcc 361
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>gb|BT016356.1| Zea mays clone Contig189 mRNA sequence
          Length = 636

 Score =  204 bits (103), Expect = 2e-49
 Identities = 184/211 (87%)
 Strand = Plus / Plus

                                                                       
Query: 101 atgggattcatcatggagttcgcggagaacctgatcctgcggctgatggaggacccggag 160
           ||||| ||||||||||| |||||||||||  ||||||| || ||||||||||||||||| 
Sbjct: 97  atgggtttcatcatggacttcgcggagaatatgatcctccgtctgatggaggacccggac 156

                                                                       
Query: 161 cagcgggacgaggcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcacc 220
            |||| ||| |||  | ||||| ||| ||||||   ||||||||||||||||||||||| 
Sbjct: 157 aagcgcgaccaggttcggcgggagcatgtctacaaaatgaaggagcggtgcgagcgcact 216

                                                                       
Query: 221 aaggcggcctgggcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaac 280
           |||||||| |||   ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaggcggcgtggagcctccctctgcgcccctacggcttctggaccttcgaccgcttcaac 276

                                          
Query: 281 tcccagctctcctgggacccccagatcagcc 311
           || |||||||||||||| |||||||||||||
Sbjct: 277 tcgcagctctcctgggatccccagatcagcc 307
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>gb|AY389672.1| Hyacinthus orientalis unknown mRNA
          Length = 621

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 243 tccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcctgggaccccc 302
           ||||||| ||||| ||||||||||||||||| |||||| |||||||| |||||||| | |
Sbjct: 220 tccgcccttacggattctggaccttcgaccggttcaacgcccagctcgcctgggacgctc 279

                    
Query: 303 agatcagcc 311
           |||||||||
Sbjct: 280 agatcagcc 288



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 113 atggagttcgcggagaacctgatcctgcggctgatggagga 153
           ||||||||||| ||||| |||||||| ||  ||||||||||
Sbjct: 90  atggagttcgctgagaatctgatccttcgtatgatggagga 130
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>gb|AY389729.1| Hyacinthus orientalis At1g67350-like protein mRNA, complete cds
          Length = 628

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 243 tccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcctgggaccccc 302
           ||||||| ||||| ||||||||||||||||| |||||| |||||||| |||||||| | |
Sbjct: 215 tccgcccttacggattctggaccttcgaccggttcaacgcccagctcgcctgggacgctc 274

                    
Query: 303 agatcagcc 311
           |||||||||
Sbjct: 275 agatcagcc 283



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 113 atggagttcgcggagaacctgatcctgcggctgatggagga 153
           ||||||||||| ||||| |||||||| ||  ||||||||||
Sbjct: 85  atggagttcgctgagaatctgatccttcgtatgatggagga 125
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>gb|AY389726.1| Hyacinthus orientalis unknown mRNA
          Length = 650

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                       
Query: 245 cgcccctacggcttctggaccttcgaccgcttcaactcccagctctcctgggacccccag 304
           ||||| ||||| ||||||||||||||||| |||||| | |||||| |||||||| | |||
Sbjct: 218 cgcccgtacggattctggaccttcgaccggttcaacgcacagctcgcctgggactctcag 277

                  
Query: 305 atcagcc 311
           |||||||
Sbjct: 278 atcagcc 284



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 113 atggagttcgcggagaacctgatcctgcggctgatggagga 153
           ||||||||||| ||||| |||||||| ||  ||||||||||
Sbjct: 86  atggagttcgctgagaatctgatccttcgtatgatggagga 126
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>gb|AF366446.1|AF366446 Allium cepa clone AGF125 maintainer line sequence
          Length = 498

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 106 attcatcatggagttcgcggagaacctgatcct 138
           |||||| |||||||||||||||||||| |||||
Sbjct: 468 attcataatggagttcgcggagaacctaatcct 436
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 130     cctgatcctgcggctgatggagga 153
               ||||||||||||||||||||||||
Sbjct: 1092745 cctgatcctgcggctgatggagga 1092768
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>dbj|AB189463.1| Rhodobacter sphaeroides f. sp. denitrificans treY gene for
           maltoologosyl trehalose synthase, complete cds
          Length = 2616

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 130 cctgatcctgcggctgatggagga 153
           ||||||||||||||||||||||||
Sbjct: 867 cctgatcctgcggctgatggagga 890
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>gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, complete sequence
          Length = 182102

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 503   ttgaactgccctagctggttcatgtgc 529
             |||||||||||| ||||||||||||||
Sbjct: 66847 ttgaactgcccttgctggttcatgtgc 66821
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>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence
          Length = 191036

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 186509 ttgaactgcccttgctggttcatgtg 186484
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>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 503   ttgaactgccctagctggttcatgtg 528
             |||||||||||| |||||||||||||
Sbjct: 58206 ttgaactgcccttgctggttcatgtg 58181
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>emb|AL807806.6| Mouse DNA sequence from clone RP23-67K19 on chromosome X, complete
             sequence
          Length = 128018

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 503   ttgaactgccctagctggttcatgtg 528
             |||||||||||| |||||||||||||
Sbjct: 91412 ttgaactgcccttgctggttcatgtg 91437
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>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete
              sequence
          Length = 220233

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 123062 ttgaactgcccttgctggttcatgtg 123087
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>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete
             sequence
          Length = 160122

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 503   ttgaactgccctagctggttcatgtg 528
             |||||||||||| |||||||||||||
Sbjct: 31082 ttgaactgcccttgctggttcatgtg 31057
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>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence
          Length = 146015

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 131826 ttgaactgcccttgctggttcatgtg 131851
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>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence
          Length = 212387

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 177359 ttgaactgcccttgctggttcatgtg 177334
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>emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chromosome 11 Contains the
             5' end of the AF424697 gene for DNA sequence AF424697
             (FLJ21950, KIAA0903-like) and a CpG island, complete
             sequence
          Length = 119258

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 503   ttgaactgccctagctggttcatgtg 528
             |||||||||||| |||||||||||||
Sbjct: 95647 ttgaactgcccttgctggttcatgtg 95672
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>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence
          Length = 193714

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 136488 ttgaactgcccttgctggttcatgtg 136463
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>dbj|AK138696.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430014J21 product:unclassifiable, full
           insert sequence
          Length = 1916

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 503 ttgaactgccctagctggttcatgtg 528
           |||||||||||| |||||||||||||
Sbjct: 758 ttgaactgcccttgctggttcatgtg 783
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>emb|BX005281.15| Mouse DNA sequence from clone RP23-268A11 on chromosome X, complete
             sequence
          Length = 60173

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 503   ttgaactgccctagctggttcatgtg 528
             |||||||||||| |||||||||||||
Sbjct: 11594 ttgaactgcccttgctggttcatgtg 11569
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>emb|AL731823.19| Mouse DNA sequence from clone RP23-60B2 on chromosome X, complete
             sequence
          Length = 102565

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 503   ttgaactgccctagctggttcatgtg 528
             |||||||||||| |||||||||||||
Sbjct: 23303 ttgaactgcccttgctggttcatgtg 23328
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>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence
          Length = 236246

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 503  ttgaactgccctagctggttcatgtg 528
            |||||||||||| |||||||||||||
Sbjct: 1833 ttgaactgcccttgctggttcatgtg 1808
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>emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on chromosome 2, complete
              sequence
          Length = 210821

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 142334 ttgaactgcccttgctggttcatgtg 142309
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>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence
          Length = 224088

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 503    ttgaactgccctagctggttcatgtg 528
              |||||||||||| |||||||||||||
Sbjct: 145715 ttgaactgcccttgctggttcatgtg 145740
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>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence
          Length = 191050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 504   tgaactgccctagctggttcatgtg 528
             ||||||||||| |||||||||||||
Sbjct: 63843 tgaactgcccttgctggttcatgtg 63867
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
              sequence
          Length = 156606

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 433    caaaataaggagaactcattt 453
              |||||||||||||||||||||
Sbjct: 154852 caaaataaggagaactcattt 154872
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>gb|AC116993.2| Homo sapiens chromosome 1 clone RP4-561P1, complete sequence
          Length = 101893

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 279   actcccagctctcctgggacc 299
             |||||||||||||||||||||
Sbjct: 95625 actcccagctctcctgggacc 95645
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>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete
             sequence
          Length = 116443

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 433   caaaataaggagaactcattt 453
             |||||||||||||||||||||
Sbjct: 92363 caaaataaggagaactcattt 92343
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>gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 206003

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 504   tgaactgccctagctggttcatgtg 528
             ||||||||||| |||||||||||||
Sbjct: 76078 tgaactgcccttgctggttcatgtg 76054
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>ref|XM_882793.1| PREDICTED: Bos taurus hypothetical protein LOC617405 (LOC617405),
           mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 158 gagcagcgggacgaggcgcagcgggcgc 185
           ||||||||||| |||| |||||||||||
Sbjct: 237 gagcagcgggaggaggagcagcgggcgc 210
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>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence
          Length = 230218

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 503    ttgaactgccctagctggttcatg 526
              |||||||||||| |||||||||||
Sbjct: 221323 ttgaactgccctcgctggttcatg 221300
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>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence
          Length = 169274

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 503    ttgaactgccctagctggttcatg 526
              |||||||||||| |||||||||||
Sbjct: 149317 ttgaactgccctcgctggttcatg 149340
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>ref|XM_759197.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0654) partial mRNA
          Length = 1776

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 486 tttcatcgattttatccttg 505
           ||||||||||||||||||||
Sbjct: 862 tttcatcgattttatccttg 843
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>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 193626

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   gcaaaataaggagaactcat 451
             ||||||||||||||||||||
Sbjct: 44804 gcaaaataaggagaactcat 44823
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>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence
          Length = 191204

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   ctgtgattacattcccttcc 484
             ||||||||||||||||||||
Sbjct: 64371 ctgtgattacattcccttcc 64352
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>gb|BC102654.1| Bos taurus cDNA clone IMAGE:7956015, partial cds
          Length = 1186

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 158 gagcagcgggacgaggcgcagcgggcgc 185
           ||||||||||| |||| |||||||||||
Sbjct: 13  gagcagcgggaggaggagcagcgggcgc 40
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 434      aaaataaggagaactcattt 453
                ||||||||||||||||||||
Sbjct: 22402936 aaaataaggagaactcattt 22402955
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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aaaataaggagaactcattt 453
             ||||||||||||||||||||
Sbjct: 99919 aaaataaggagaactcattt 99938
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>ref|XM_310742.2| Anopheles gambiae str. PEST ENSANGP00000010052
           (ENSANGG00000007563), partial mRNA
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 atgggattcatcatggagtt 120
           ||||||||||||||||||||
Sbjct: 827 atgggattcatcatggagtt 808
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>gb|AY675212.1| Oryzias latipes hypothetical protein mRNA, partial cds
          Length = 681

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 cctgatcctgcggctgatgg 149
           ||||||||||||||||||||
Sbjct: 192 cctgatcctgcggctgatgg 173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,865,695
Number of Sequences: 3902068
Number of extensions: 2865695
Number of successful extensions: 55833
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55644
Number of HSP's gapped (non-prelim): 189
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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