ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9m18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464731.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1951 Score = 480 bits (242), Expect = e-132 Identities = 353/390 (90%) Strand = Plus / Minus Query: 111 aggccatggcgcgccagccattactgcttcaatttcccagatctcccgggggcaattcgt 170 |||||||||||| ||||||||||| ||||| ||||||||| |||||| |||||| || || Sbjct: 1522 aggccatggcgcaccagccattacagcttcgatttcccaggtctccctggggcagtttgt 1463 Query: 171 caggttcttgcatccttgccctgtcacatacagatcactttcaatacgaacaccaccaaa 230 ||||||||||||||| ||| | |||||||||| ||||| ||||| |||||||||||||| Sbjct: 1462 caggttcttgcatccatgcgccgtcacatacacgtcactctcaatccgaacaccaccaaa 1403 Query: 231 acttttgtacttctcaatctcttcccagttgaagaactttgaggaaattggatcatctct 290 |||||||| || |||||||||||||||||||||||||| ||||||| ||||||||| || Sbjct: 1402 gcttttgtatttttcaatctcttcccagttgaagaacttcgaggaaactggatcatccct 1343 Query: 291 ggcaggcctcagcaaagcatcgatgaaataacagcctggctcaaccgtaataaccatccc 350 ||| || ||||||||||||| |||||||| || ||||||||||| || |||||||| || Sbjct: 1342 ggctggtatcagcaaagcatcaatgaaatagcaacctggctcaactgtgataaccatgcc 1283 Query: 351 ttctttaagttctcttatggtacgcaaggagctcagtcctggctcatttggcctctctaa 410 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1282 ttctttaagttctcttatggtccgcaaggagctcagtcctggctcctttggcctctctaa 1223 Query: 411 gccctcagggtagcctccgggatcatgggtgtcaattccaagcaagtgcccaagaccatg 470 ||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 1222 gccctcaggatagcccccaggatcatgggtgtcaataccaagcaagtgtccaagaccatg 1163 Query: 471 aggcatgaaaacagcacccaaccttcgagc 500 ||||||||||||||||||||||||| |||| Sbjct: 1162 aggcatgaaaacagcacccaacctttgagc 1133
>dbj|AK064268.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E02, full insert sequence Length = 1951 Score = 480 bits (242), Expect = e-132 Identities = 353/390 (90%) Strand = Plus / Minus Query: 111 aggccatggcgcgccagccattactgcttcaatttcccagatctcccgggggcaattcgt 170 |||||||||||| ||||||||||| ||||| ||||||||| |||||| |||||| || || Sbjct: 1522 aggccatggcgcaccagccattacagcttcgatttcccaggtctccctggggcagtttgt 1463 Query: 171 caggttcttgcatccttgccctgtcacatacagatcactttcaatacgaacaccaccaaa 230 ||||||||||||||| ||| | |||||||||| ||||| ||||| |||||||||||||| Sbjct: 1462 caggttcttgcatccatgcgccgtcacatacacgtcactctcaatccgaacaccaccaaa 1403 Query: 231 acttttgtacttctcaatctcttcccagttgaagaactttgaggaaattggatcatctct 290 |||||||| || |||||||||||||||||||||||||| ||||||| ||||||||| || Sbjct: 1402 gcttttgtatttttcaatctcttcccagttgaagaacttcgaggaaactggatcatccct 1343 Query: 291 ggcaggcctcagcaaagcatcgatgaaataacagcctggctcaaccgtaataaccatccc 350 ||| || ||||||||||||| |||||||| || ||||||||||| || |||||||| || Sbjct: 1342 ggctggtatcagcaaagcatcaatgaaatagcaacctggctcaactgtgataaccatgcc 1283 Query: 351 ttctttaagttctcttatggtacgcaaggagctcagtcctggctcatttggcctctctaa 410 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1282 ttctttaagttctcttatggtccgcaaggagctcagtcctggctcctttggcctctctaa 1223 Query: 411 gccctcagggtagcctccgggatcatgggtgtcaattccaagcaagtgcccaagaccatg 470 ||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 1222 gccctcaggatagcccccaggatcatgggtgtcaataccaagcaagtgtccaagaccatg 1163 Query: 471 aggcatgaaaacagcacccaaccttcgagc 500 ||||||||||||||||||||||||| |||| Sbjct: 1162 aggcatgaaaacagcacccaacctttgagc 1133
>gb|AY105932.1| Zea mays PCO081178 mRNA sequence Length = 1142 Score = 331 bits (167), Expect = 1e-87 Identities = 335/391 (85%) Strand = Plus / Minus Query: 110 gaggccatggcgcgccagccattactgcttcaatttcccagatctcccgggggcaattcg 169 |||||||||| |||||||||||||| || || || |||||| |||| | ||||| || | Sbjct: 858 gaggccatggtgcgccagccattacagcctcgatctcccaggtctctctcgggcagtttg 799 Query: 170 tcaggttcttgcatccttgccctgtcacatacagatcactttcaatacgaacaccaccaa 229 | |||||| ||||||||| | |||||||||| |||||||||||| ||||| ||||||| Sbjct: 798 tgaggttccggcatccttgagccgtcacatacacatcactttcaatgcgaacgccaccaa 739 Query: 230 aacttttgtacttctcaatctcttcccagttgaagaactttgaggaaattggatcatctc 289 | ||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| | Sbjct: 738 agcttttatacttttcaacctcttgccagttgaagaactttgaggaaattggatcatccc 679 Query: 290 tggcaggcctcagcaaagcatcgatgaaataacagcctggctcaaccgtaataaccatcc 349 | | | ||||||||||| |||||||| ||||||||||| || || |||||||| | Sbjct: 678 ttgttttagttagcaaagcatcaatgaaatagcagcctggctccactgtgataaccattc 619 Query: 350 cttctttaagttctcttatggtacgcaaggagctcagtcctggctcatttggcctctcta 409 ||||||| ||||||||| |||| ||||||||| |||||||||| || || |||||||| | Sbjct: 618 cttctttcagttctcttgtggtccgcaaggagttcagtcctggatccttgggcctctcca 559 Query: 410 agccctcagggtagcctccgggatcatgggtgtcaattccaagcaagtgcccaagaccat 469 | ||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 558 atccctcagggtagcctcctggatcatgggtgtcaataccaagtaagtggccaagaccat 499 Query: 470 gaggcatgaaaacagcacccaaccttcgagc 500 |||||||||||||||| || |||||| |||| Sbjct: 498 gaggcatgaaaacagcccctaacctttgagc 468
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 153 bits (77), Expect = 7e-34 Identities = 125/141 (88%) Strand = Plus / Minus Query: 205 tcactttcaatacgaacaccaccaaaacttttgtacttctcaatctcttcccagttgaag 264 ||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 6990963 tcactctcaatccgaacaccaccaaagcttttgtatttttcaatctcttcccagttgaag 6990904 Query: 265 aactttgaggaaattggatcatctctggcaggcctcagcaaagcatcgatgaaataacag 324 ||||| ||||||| ||||||||| ||||| || ||||||||||||| |||||||| || Sbjct: 6990903 aacttcgaggaaactggatcatccctggctggtatcagcaaagcatcaatgaaatagcaa 6990844 Query: 325 cctggctcaaccgtaataacc 345 ||||||||||| || |||||| Sbjct: 6990843 cctggctcaactgtgataacc 6990823 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 413 cctcagggtagcctccgggatcatgggtgtcaattccaagcaagtgcccaagaccatgag 472 ||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 6989895 cctcaggatagcccccaggatcatgggtgtcaataccaagcaagtgtccaagaccatgag 6989836 Query: 473 gcatgaaaacagcacccaaccttcgagc 500 ||||||||||||||||||||||| |||| Sbjct: 6989835 gcatgaaaacagcacccaacctttgagc 6989808 Score = 125 bits (63), Expect = 1e-25 Identities = 72/75 (96%) Strand = Plus / Minus Query: 341 taaccatcccttctttaagttctcttatggtacgcaaggagctcagtcctggctcatttg 400 ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 6990110 taaccatgccttctttaagttctcttatggtccgcaaggagctcagtcctggctcctttg 6990051 Query: 401 gcctctctaagccct 415 ||||||||||||||| Sbjct: 6990050 gcctctctaagccct 6990036 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 111 aggccatggcgcgccagccattactgcttcaatttcccagatctcccgggggcaattcgt 170 |||||||||||| ||||||||||| ||||| ||||||||| |||||| |||||| || || Sbjct: 6992127 aggccatggcgcaccagccattacagcttcgatttcccaggtctccctggggcagtttgt 6992068 Query: 171 caggttcttgcatccttgccctgtcacatac 201 ||||||||||||||| ||| | ||||||||| Sbjct: 6992067 caggttcttgcatccatgcgccgtcacatac 6992037
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 153 bits (77), Expect = 7e-34 Identities = 125/141 (88%) Strand = Plus / Minus Query: 205 tcactttcaatacgaacaccaccaaaacttttgtacttctcaatctcttcccagttgaag 264 ||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 84585 tcactctcaatccgaacaccaccaaagcttttgtatttttcaatctcttcccagttgaag 84526 Query: 265 aactttgaggaaattggatcatctctggcaggcctcagcaaagcatcgatgaaataacag 324 ||||| ||||||| ||||||||| ||||| || ||||||||||||| |||||||| || Sbjct: 84525 aacttcgaggaaactggatcatccctggctggtatcagcaaagcatcaatgaaatagcaa 84466 Query: 325 cctggctcaaccgtaataacc 345 ||||||||||| || |||||| Sbjct: 84465 cctggctcaactgtgataacc 84445 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 413 cctcagggtagcctccgggatcatgggtgtcaattccaagcaagtgcccaagaccatgag 472 ||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 83517 cctcaggatagcccccaggatcatgggtgtcaataccaagcaagtgtccaagaccatgag 83458 Query: 473 gcatgaaaacagcacccaaccttcgagc 500 ||||||||||||||||||||||| |||| Sbjct: 83457 gcatgaaaacagcacccaacctttgagc 83430 Score = 125 bits (63), Expect = 1e-25 Identities = 72/75 (96%) Strand = Plus / Minus Query: 341 taaccatcccttctttaagttctcttatggtacgcaaggagctcagtcctggctcatttg 400 ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 83732 taaccatgccttctttaagttctcttatggtccgcaaggagctcagtcctggctcctttg 83673 Query: 401 gcctctctaagccct 415 ||||||||||||||| Sbjct: 83672 gcctctctaagccct 83658 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 111 aggccatggcgcgccagccattactgcttcaatttcccagatctcccgggggcaattcgt 170 |||||||||||| ||||||||||| ||||| ||||||||| |||||| |||||| || || Sbjct: 85749 aggccatggcgcaccagccattacagcttcgatttcccaggtctccctggggcagtttgt 85690 Query: 171 caggttcttgcatccttgccctgtcacatac 201 ||||||||||||||| ||| | ||||||||| Sbjct: 85689 caggttcttgcatccatgcgccgtcacatac 85659
>ref|NM_119095.2| Arabidopsis thaliana unknown protein AT4G29500 mRNA, complete cds Length = 714 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 466 ccatgaggcatgaaaacagcacccaa 491 |||||||||||||||||||||||||| Sbjct: 179 ccatgaggcatgaaaacagcacccaa 154
>emb|AL079344.1|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project) Length = 88011 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 466 ccatgaggcatgaaaacagcacccaa 491 |||||||||||||||||||||||||| Sbjct: 499 ccatgaggcatgaaaacagcacccaa 474
>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71 Length = 200001 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 466 ccatgaggcatgaaaacagcacccaa 491 |||||||||||||||||||||||||| Sbjct: 25314 ccatgaggcatgaaaacagcacccaa 25289
>gb|AY136419.1| Arabidopsis thaliana X-Pro dipeptidase-like protein (At4g29500) mRNA, complete cds Length = 1672 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 466 ccatgaggcatgaaaacagcacccaa 491 |||||||||||||||||||||||||| Sbjct: 1137 ccatgaggcatgaaaacagcacccaa 1112
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 323 agcctggctcaaccgtaataaccatccc 350 ||||||||||||| |||||||||||||| Sbjct: 1023190 agcctggctcaacagtaataaccatccc 1023163
>ref|XM_493783.1| Oryza sativa (japonica cultivar-group), Ozsa8502 predicted mRNA Length = 2898 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 accaccaaaacttttgtacttctcaa 247 |||||||||||||||| ||||||||| Sbjct: 1092 accaccaaaacttttggacttctcaa 1067
>ref|XM_475516.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 accaccaaaacttttgtacttctcaa 247 |||||||||||||||| ||||||||| Sbjct: 930 accaccaaaacttttggacttctcaa 905
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 accaccaaaacttttgtacttctcaa 247 |||||||||||||||| ||||||||| Sbjct: 104215 accaccaaaacttttggacttctcaa 104190
>emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 6/8 Length = 349895 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 cttcccagttgaagaactttga 272 |||||||||||||||||||||| Sbjct: 338111 cttcccagttgaagaactttga 338090
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 accaccaaaacttttgtacttctcaa 247 |||||||||||||||| ||||||||| Sbjct: 1148604 accaccaaaacttttggacttctcaa 1148579
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 accaccaaaacttttgtacttctcaa 247 |||||||||||||||| ||||||||| Sbjct: 9497022 accaccaaaacttttggacttctcaa 9496997
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 accaccaaaacttttgtacttctcaa 247 |||||||||||||||| ||||||||| Sbjct: 30451 accaccaaaacttttggacttctcaa 30426
>gb|BC072968.1| Xenopus laevis cDNA clone IMAGE:4963467, partial cds Length = 2092 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 442 tcaattccaagcaagtgcccaagaccatgaggcatgaaaacagcaccca 490 |||||||| || || || |||||||| || ||||||||||| ||||||| Sbjct: 1406 tcaattcctagaaaatgtccaagaccgtgtggcatgaaaactgcaccca 1358
>emb|CT025447.2| Xenopus tropicalis finished cDNA, clone TGas107e10 Length = 1835 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 442 tcaattccaagcaagtgcccaagaccatgaggcatgaaaacagcaccca 490 |||||||| || || || |||||||| || ||||||||||| ||||||| Sbjct: 1150 tcaattcctaggaaatgtccaagaccgtgtggcatgaaaactgcaccca 1102
>gb|BC054994.1| Xenopus laevis hypothetical protein MGC64570, mRNA (cDNA clone MGC:64570 IMAGE:6880392), complete cds Length = 1830 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 442 tcaattccaagcaagtgcccaagaccatgaggcatgaaaacagcaccca 490 |||||||| || || || |||||||| || ||||||||||| ||||||| Sbjct: 1153 tcaattcctaggaaatgtccaagaccgtgtggcatgaaaactgcaccca 1105
>ref|NM_001008093.1| Xenopus tropicalis pepd protein (pepd), mRNA Length = 1873 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 442 tcaattccaagcaagtgcccaagaccatgaggcatgaaaacagcaccca 490 |||||||| || || || |||||||| || ||||||||||| ||||||| Sbjct: 1188 tcaattcctaggaaatgtccaagaccgtgtggcatgaaaactgcaccca 1140
>gb|BC081293.1| Xenopus tropicalis pepd protein, mRNA (cDNA clone MGC:89151 IMAGE:7015948), complete cds Length = 1873 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 442 tcaattccaagcaagtgcccaagaccatgaggcatgaaaacagcaccca 490 |||||||| || || || |||||||| || ||||||||||| ||||||| Sbjct: 1188 tcaattcctaggaaatgtccaagaccgtgtggcatgaaaactgcaccca 1140
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 gcaaagcatcgatgaaataac 322 ||||||||||||||||||||| Sbjct: 1471181 gcaaagcatcgatgaaataac 1471161
>gb|AC090451.6| Homo sapiens chromosome 8, clone RP11-318N11, complete sequence Length = 160671 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 accaaaacttttgtacttctcaatc 249 ||||||||| ||||||||||||||| Sbjct: 14540 accaaaactcttgtacttctcaatc 14516
>gb|BC094190.1| Xenopus laevis cDNA clone MGC:115123 IMAGE:6948152, complete cds Length = 1838 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 442 tcaattccaagcaagtgcccaagaccatgaggcatgaaaacagcaccca 490 |||||||| || || || |||||||| || ||||||||||| ||||||| Sbjct: 1135 tcaattcctagaaaatgtccaagaccgtgtggcatgaaaactgcaccca 1087
>ref|XM_580171.1| PREDICTED: Rattus norvegicus LOC501200 (LOC501200), mRNA Length = 1271 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ctggcaggcctcagcaaagca 309 ||||||||||||||||||||| Sbjct: 956 ctggcaggcctcagcaaagca 936
>gb|AC087856.6| Homo sapiens chromosome 8, clone RP11-4K16, complete sequence Length = 169060 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 accaaaacttttgtacttctcaatc 249 ||||||||| ||||||||||||||| Sbjct: 93110 accaaaactcttgtacttctcaatc 93134
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 gcaaagcatcgatgaaataac 322 ||||||||||||||||||||| Sbjct: 1442626 gcaaagcatcgatgaaataac 1442606
>gb|AC009514.2|AC009514 Homo sapiens chromosome 8 clone RP11-4K16, complete sequence Length = 169059 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 accaaaacttttgtacttctcaatc 249 ||||||||| ||||||||||||||| Sbjct: 93110 accaaaactcttgtacttctcaatc 93134
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 gcaaagcatcgatgaaataac 322 ||||||||||||||||||||| Sbjct: 1404264 gcaaagcatcgatgaaataac 1404244
>ref|NM_125127.2| Arabidopsis thaliana XRCC3; ATP binding / damaged DNA binding AT5G57450 (XRCC3) transcript variant AT5G57450.2 mRNA, complete cds Length = 1215 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 613 actgcttcaatttcccagat 594
>ref|NM_180871.1| Arabidopsis thaliana XRCC3; ATP binding / damaged DNA binding AT5G57450 (XRCC3) transcript variant AT5G57450.1 mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 613 actgcttcaatttcccagat 594
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 328 ggctcaaccgtaataaccatcccttctt 355 ||||||| |||||| ||||||||||||| Sbjct: 1521621 ggctcaatcgtaattaccatcccttctt 1521594
>gb|AC091499.2| Drosophila melanogaster clone BACR33L22, complete sequence Length = 182105 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccattactgcttcaatttc 146 |||||||||||||||||||| Sbjct: 69188 gccattactgcttcaatttc 69169
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 328 ggctcaaccgtaataaccatcccttctt 355 ||||||| |||||| ||||||||||||| Sbjct: 1497435 ggctcaatcgtaattaccatcccttctt 1497408
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 328 ggctcaaccgtaataaccatcccttctt 355 ||||||| |||||| ||||||||||||| Sbjct: 1497386 ggctcaatcgtaattaccatcccttctt 1497359
>emb|BX928741.7| Zebrafish DNA sequence from clone CH211-119L15 in linkage group 8, complete sequence Length = 58030 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 tgaagaactttgaggaaatt 279 |||||||||||||||||||| Sbjct: 10046 tgaagaactttgaggaaatt 10027
>emb|AL157404.18| Human DNA sequence from clone RP1-148L21 on chromosome 1q21.2-22, complete sequence Length = 61398 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccaccaaaacttttgtactt 242 |||||||||||||||||||| Sbjct: 3905 ccaccaaaacttttgtactt 3886
>emb|AJ438909.1|ATH438909 Arabidopsis thaliana rad51B gene for Rad51B protein Length = 1020 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 636 actgcttcaatttcccagat 617
>emb|AJ438908.1|ATH438908 Arabidopsis thaliana mRNA for Rad51B protein Length = 915 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 559 actgcttcaatttcccagat 540
>gb|AC113614.4| Homo sapiens BAC clone RP11-559P10 from 4, complete sequence Length = 103585 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ctggctcatttggcctctct 408 |||||||||||||||||||| Sbjct: 1810 ctggctcatttggcctctct 1791
>tpg|BK003761.1| TPA: TPA_inf: Drosophila melanogaster HDC06067 (HDC06067) gene, complete cds Length = 1151 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccattactgcttcaatttc 146 |||||||||||||||||||| Sbjct: 1006 gccattactgcttcaatttc 987
>gb|AY032998.1| Arabidopsis thaliana DNA repair protein XRCC3 gene, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 579 actgcttcaatttcccagat 560
>gb|AC116422.1| Homo sapiens BAC clone RP11-401G6 from 4, complete sequence Length = 61946 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ctggctcatttggcctctct 408 |||||||||||||||||||| Sbjct: 61756 ctggctcatttggcctctct 61737
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence Length = 175840 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gtgcccaagaccatgaggca 475 |||||||||||||||||||| Sbjct: 41916 gtgcccaagaccatgaggca 41897
>gb|AC010599.8| Homo sapiens chromosome 5 clone CTC-561L20, complete sequence Length = 114411 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccattactgcttcaatttc 146 |||||||||||||||||||| Sbjct: 81503 gccattactgcttcaatttc 81484
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaagcatcgatgaaataa 321 |||||||||||||||||||| Sbjct: 1480953 gcaaagcatcgatgaaataa 1480934
>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence Length = 175579 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gtgcccaagaccatgaggca 475 |||||||||||||||||||| Sbjct: 129048 gtgcccaagaccatgaggca 129029
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaagcatcgatgaaataa 321 |||||||||||||||||||| Sbjct: 1377177 gcaaagcatcgatgaaataa 1377158
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaagcatcgatgaaataa 321 |||||||||||||||||||| Sbjct: 1457897 gcaaagcatcgatgaaataa 1457878
>gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, complete sequence Length = 188858 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 agtcctggctcatttggcct 404 |||||||||||||||||||| Sbjct: 82550 agtcctggctcatttggcct 82531
>gb|AC008903.7| Homo sapiens chromosome 5 clone CTD-2252H11, complete sequence Length = 148688 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccattactgcttcaatttc 146 |||||||||||||||||||| Sbjct: 65233 gccattactgcttcaatttc 65214
>gb|AE003821.4| Drosophila melanogaster chromosome 2R, section 29 of 73 of the complete sequence Length = 294168 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccattactgcttcaatttc 146 |||||||||||||||||||| Sbjct: 284271 gccattactgcttcaatttc 284252
>dbj|AB062455.1| Arabidopsis thaliana AtXRCC3alpha mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 613 actgcttcaatttcccagat 594
>dbj|AB073492.1| Arabidopsis thaliana AtXRCC3beta mRNA, complete cds Length = 1215 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 613 actgcttcaatttcccagat 594
>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2 Length = 83478 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 actgcttcaatttcccagat 152 |||||||||||||||||||| Sbjct: 5305 actgcttcaatttcccagat 5324
>gb|AC007453.1|AC007453 Drosophila melanogaster, chromosome 2R, region 49C1-49D3, P1 clones DS04499, DS06146, and DS00455, complete sequence Length = 145055 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccattactgcttcaatttc 146 |||||||||||||||||||| Sbjct: 105951 gccattactgcttcaatttc 105932
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 328 ggctcaaccgtaataaccatcccttctt 355 ||||||| |||||| ||||||||||||| Sbjct: 1497312 ggctcaatcgtaattaccatcccttctt 1497285 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,165,432 Number of Sequences: 3902068 Number of extensions: 4165432 Number of successful extensions: 78089 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77768 Number of HSP's gapped (non-prelim): 321 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
