| Clone Name | rbaal9m17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ219480.1| Wheat putative protease mRNA, particial cds Length = 453 Score = 357 bits (180), Expect = 3e-95 Identities = 306/348 (87%) Strand = Plus / Minus Query: 312 tccgccaccataatgcacgagtccatctccagactcgcggcctcgttgctctcggtgagc 371 |||||||||||||||||||||||||||| | ||||||||||| |||| | ||||||| Sbjct: 355 tccgccaccataatgcacgagtccatctttaaactcgcggcctggttgtttccggtgagg 296 Query: 372 gaaggcgctctcggtaaggatagcgcgtcagcggtgcactgtatgtcgggttggatcccg 431 |||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 295 gaaggcgccctgggtaaggatagcgggtcagcggtgcattgtatgtcgggttggatcccg 236 Query: 432 atatggtcgatttcgtgcagcgccggagagagatactttgcaaccgtgatgaatagagca 491 | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 235 acatggtcgatttcgtgcagcgcgggagagagatactttgcaggtgtgatgaatagagca 176 Query: 492 gagccatcatccagctctgtgacactctgtattcttcctttgccaaaggttttgtggcct 551 ||| || | ||| | ||| |||||||||||||||| ||| | ||||||||||||||| Sbjct: 175 gaggtattgtacagttttgtcacactctgtattcttcttttacagaaggttttgtggcct 116 Query: 552 accagaatagcacggccattgtcatgcagtgccccagccaaaatttcgcttgcactggca 611 | |||||||| |||| |||||||||||| || |||||||||||| | ||| | ||||| Sbjct: 115 aacagaatagtacgggcattgtcatgcaatggtgcagccaaaatttggtttgaattggca 56 Query: 612 ctttcttcgttgacaagcaccacaagaggatcatgtgttaaagattgg 659 |||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 55 ctttttttgttgacaagcaccacaagaggatcatgtgttaaagattgg 8
>dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008K20, full insert sequence Length = 1951 Score = 234 bits (118), Expect = 3e-58 Identities = 337/410 (82%) Strand = Plus / Minus Query: 269 ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328 |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || || Sbjct: 1562 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 1503 Query: 329 cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388 || |||||||||||| | | ||| | || | ||| | |||||||| ||||| || || Sbjct: 1502 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 1443 Query: 389 ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448 |||| | |||| |||||| |||||||| |||||||| || | ||||||||||| || Sbjct: 1442 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 1383 Query: 449 cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508 ||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||| || Sbjct: 1382 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 1323 Query: 509 tgtgacactctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggcc 568 || |||||||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| || Sbjct: 1322 agtcacactctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgacc 1263 Query: 569 attgtcatgcagtgccccagccaaaatttcgcttgcactggcactttcttcgttgacaag 628 ||||||||| | ||| || ||||| ||||| |||||||| |||||| |||| |||||||| Sbjct: 1262 attgtcatgtaatgctcctgccaagatttcacttgcacttgcacttccttcattgacaag 1203 Query: 629 caccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678 || ||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct: 1202 tacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 1153
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 2e-19 Identities = 203/253 (80%) Strand = Plus / Minus Query: 269 ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328 |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || || Sbjct: 12192541 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 12192482 Query: 329 cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388 || |||||||||||| | | ||| | || | ||| | |||||||| ||||| || || Sbjct: 12192481 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 12192422 Query: 389 ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448 |||| | |||| |||||| |||||||| |||||||| || | ||||||||||| || Sbjct: 12192421 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 12192362 Query: 449 cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508 ||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||| || Sbjct: 12192361 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 12192302 Query: 509 tgtgacactctgt 521 || ||||||||| Sbjct: 12192301 agtcacactctgt 12192289 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 518 ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 577 ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| ||||||||||| Sbjct: 12192173 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 12192114 Query: 578 cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 625 | ||| || ||||| ||||| |||||||| |||||| |||| ||||| Sbjct: 12192113 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 12192066 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 624 acaagcaccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678 ||||| || ||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct: 12191970 acaagtacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 12191916
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592B08 Length = 131096 Score = 105 bits (53), Expect = 2e-19 Identities = 203/253 (80%) Strand = Plus / Minus Query: 269 ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328 |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || || Sbjct: 29563 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 29504 Query: 329 cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388 || |||||||||||| | | ||| | || | ||| | |||||||| ||||| || || Sbjct: 29503 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 29444 Query: 389 ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448 |||| | |||| |||||| |||||||| |||||||| || | ||||||||||| || Sbjct: 29443 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 29384 Query: 449 cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508 ||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||| || Sbjct: 29383 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 29324 Query: 509 tgtgacactctgt 521 || ||||||||| Sbjct: 29323 agtcacactctgt 29311 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 518 ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 577 ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| ||||||||||| Sbjct: 29195 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 29136 Query: 578 cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 625 | ||| || ||||| ||||| |||||||| |||||| |||| ||||| Sbjct: 29135 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 29088 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 624 acaagcaccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678 ||||| || ||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct: 28992 acaagtacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 28938
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 105 bits (53), Expect = 2e-19 Identities = 203/253 (80%) Strand = Plus / Minus Query: 269 ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328 |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || || Sbjct: 135330 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 135271 Query: 329 cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388 || |||||||||||| | | ||| | || | ||| | |||||||| ||||| || || Sbjct: 135270 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 135211 Query: 389 ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448 |||| | |||| |||||| |||||||| |||||||| || | ||||||||||| || Sbjct: 135210 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 135151 Query: 449 cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508 ||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||| || Sbjct: 135150 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 135091 Query: 509 tgtgacactctgt 521 || ||||||||| Sbjct: 135090 agtcacactctgt 135078 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 518 ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 577 ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| ||||||||||| Sbjct: 134962 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 134903 Query: 578 cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 625 | ||| || ||||| ||||| |||||||| |||||| |||| ||||| Sbjct: 134902 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 134855 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 624 acaagcaccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678 ||||| || ||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct: 134759 acaagtacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 134705
>ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-type peptidase AT3G57680 mRNA, complete cds Length = 1551 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 588 gccaaaatttcgcttgcactggcactttcttcgttgacaagcaccacaagaggatcatgt 647 ||||||||||| |||||||| |||||| |||| || |||||||| ||||| ||||||||| Sbjct: 1229 gccaaaatttcacttgcactagcacttccttcattcacaagcacaacaagtggatcatgt 1170 Query: 648 gt 649 || Sbjct: 1169 gt 1168
>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon Length = 2858 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 564 cggccattgtcatgcagtgccccagccaaaatttc 598 ||||||||||| || ||||||||||| |||||||| Sbjct: 263 cggccattgtcttggagtgccccagctaaaatttc 297
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 acaacaatacaagttacaatc 34 ||||||||||||||||||||| Sbjct: 19088221 acaacaatacaagttacaatc 19088201
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 acaacaatacaagttacaatc 34 ||||||||||||||||||||| Sbjct: 93742 acaacaatacaagttacaatc 93722
>dbj|AK069352.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N14, full insert sequence Length = 3604 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 acaacaatacaagttacaatc 34 ||||||||||||||||||||| Sbjct: 1358 acaacaatacaagttacaatc 1338
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 573 tcatgcagtgccccagccaaaatttcgcttgcactggcact 613 ||||||||||| |||| ||||||||| |||||||||||| Sbjct: 1631410 tcatgcagtgctgcagcaaaaatttcggatgcactggcact 1631450
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tggtcgatttcgtgcagcgc 454 |||||||||||||||||||| Sbjct: 64351 tggtcgatttcgtgcagcgc 64332
>emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22, complete sequence Length = 112797 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 514 cactctgtattcttcctttg 533 |||||||||||||||||||| Sbjct: 26387 cactctgtattcttcctttg 26368
>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence Length = 193572 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 tccagctctgtgacactctg 520 |||||||||||||||||||| Sbjct: 179913 tccagctctgtgacactctg 179894
>gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosome 7, complete sequence Length = 205352 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 tccagctctgtgacactctg 520 |||||||||||||||||||| Sbjct: 12430 tccagctctgtgacactctg 12411
>emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chromosome 1q25.1-31.1 Contains the 3' end of the DHX9 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 9 and the 3' end of a gene for a novel protein, complete sequence Length = 42262 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tatttatttacagaggtagt 223 |||||||||||||||||||| Sbjct: 26217 tatttatttacagaggtagt 26198
>emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H3 on chromosome 20 Contains the 3' end of the ATRN gene for attractin (with dipeptidylpeptidase IV activity) (KIAA0548), ESTs, STSs and GSSs, complete sequence Length = 104907 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 524 tcttcctttgccaaaggttttgtg 547 |||||||||||||| ||||||||| Sbjct: 75005 tcttcctttgccaatggttttgtg 75028
>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8 Length = 94378 Score = 40.1 bits (20), Expect = 9.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 588 gccaaaatttcgcttgcactggcactttcttc 619 ||||||||||| |||||||| |||||| |||| Sbjct: 26832 gccaaaatttcacttgcactagcacttccttc 26863
>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21, complete sequence Length = 147564 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ttttgtggcctaccagaata 560 |||||||||||||||||||| Sbjct: 73783 ttttgtggcctaccagaata 73764
>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence Length = 169106 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 atatttatttacagaggtag 222 |||||||||||||||||||| Sbjct: 77128 atatttatttacagaggtag 77109
>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence Length = 38838 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 cgatttcgtgcagcgccgga 458 |||||||||||||||||||| Sbjct: 14591 cgatttcgtgcagcgccgga 14572
>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence Length = 210849 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tatttatttacagaggtagt 223 |||||||||||||||||||| Sbjct: 104286 tatttatttacagaggtagt 104305
>gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp120 C2-C4 region (env) gene, partial cds Length = 649 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 cacactacaatgcagaatacaaca 180 ||||||||||||||||||| |||| Sbjct: 406 cacactacaatgcagaataaaaca 429
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tggtcgatttcgtgcagcgc 454 |||||||||||||||||||| Sbjct: 18328986 tggtcgatttcgtgcagcgc 18328967
>gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ASLV retrovirus gag pseudogene, partial sequence Length = 826 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 cccagccaaaatttcgcttg 603 |||||||||||||||||||| Sbjct: 267 cccagccaaaatttcgcttg 248
>gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ASLV retrovirus gag polyprotein (gag) gene, partial cds Length = 825 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 cccagccaaaatttcgcttg 603 |||||||||||||||||||| Sbjct: 267 cccagccaaaatttcgcttg 248
>gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ASLV retrovirus gag polyprotein (gag) gene, partial cds Length = 777 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 cccagccaaaatttcgcttg 603 |||||||||||||||||||| Sbjct: 267 cccagccaaaatttcgcttg 248
>gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ASLV retrovirus gag polyprotein (gag) gene, partial cds Length = 1216 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 cccagccaaaatttcgcttg 603 |||||||||||||||||||| Sbjct: 267 cccagccaaaatttcgcttg 248
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tggtcgatttcgtgcagcgc 454 |||||||||||||||||||| Sbjct: 18488387 tggtcgatttcgtgcagcgc 18488368
>emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in linkage group 21, complete sequence Length = 136791 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 ttttgtggcctaccagaata 560 |||||||||||||||||||| Sbjct: 48247 ttttgtggcctaccagaata 48266
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 gacaagcaccacaagaggat 642 |||||||||||||||||||| Sbjct: 3990 gacaagcaccacaagaggat 3971
>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence Length = 206647 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 524 tcttcctttgccaaaggttttgtg 547 |||||||||||||| ||||||||| Sbjct: 99680 tcttcctttgccaatggttttgtg 99703 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,196,591 Number of Sequences: 3902068 Number of extensions: 5196591 Number of successful extensions: 90660 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90479 Number of HSP's gapped (non-prelim): 180 length of query: 683 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 660 effective length of database: 17,143,297,704 effective search space: 11314576484640 effective search space used: 11314576484640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)