ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ219480.1| Wheat putative protease mRNA, particial cds 357 3e-95
2dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-t... 68 4e-08
7emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon 46 0.15
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
9dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
10dbj|AK069352.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
11gb|AE016830.1| Enterococcus faecalis V583, complete genome 42 2.4
12gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
13emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22... 40 9.3
14gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome... 40 9.3
15gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosom... 40 9.3
16emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chr... 40 9.3
17emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H... 40 9.3
18emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BA... 40 9.3
19emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 9.3
20gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, comple... 40 9.3
21gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete s... 40 9.3
22gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, com... 40 9.3
23gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp12... 40 9.3
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
25gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ... 40 9.3
26gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ... 40 9.3
27gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ... 40 9.3
28gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ... 40 9.3
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
30emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in... 40 9.3
31gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromoso... 40 9.3
32dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:... 40 9.3

>gb|DQ219480.1| Wheat putative protease mRNA, particial cds
          Length = 453

 Score =  357 bits (180), Expect = 3e-95
 Identities = 306/348 (87%)
 Strand = Plus / Minus

                                                                       
Query: 312 tccgccaccataatgcacgagtccatctccagactcgcggcctcgttgctctcggtgagc 371
           ||||||||||||||||||||||||||||  | ||||||||||| |||| |  ||||||| 
Sbjct: 355 tccgccaccataatgcacgagtccatctttaaactcgcggcctggttgtttccggtgagg 296

                                                                       
Query: 372 gaaggcgctctcggtaaggatagcgcgtcagcggtgcactgtatgtcgggttggatcccg 431
           |||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 295 gaaggcgccctgggtaaggatagcgggtcagcggtgcattgtatgtcgggttggatcccg 236

                                                                       
Query: 432 atatggtcgatttcgtgcagcgccggagagagatactttgcaaccgtgatgaatagagca 491
           | ||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||
Sbjct: 235 acatggtcgatttcgtgcagcgcgggagagagatactttgcaggtgtgatgaatagagca 176

                                                                       
Query: 492 gagccatcatccagctctgtgacactctgtattcttcctttgccaaaggttttgtggcct 551
           |||  ||  | ||| | ||| |||||||||||||||| ||| |  |||||||||||||||
Sbjct: 175 gaggtattgtacagttttgtcacactctgtattcttcttttacagaaggttttgtggcct 116

                                                                       
Query: 552 accagaatagcacggccattgtcatgcagtgccccagccaaaatttcgcttgcactggca 611
           | |||||||| |||| |||||||||||| ||   |||||||||||| | ||| | |||||
Sbjct: 115 aacagaatagtacgggcattgtcatgcaatggtgcagccaaaatttggtttgaattggca 56

                                                           
Query: 612 ctttcttcgttgacaagcaccacaagaggatcatgtgttaaagattgg 659
           |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ctttttttgttgacaagcaccacaagaggatcatgtgttaaagattgg 8



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>dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008K20, full
            insert sequence
          Length = 1951

 Score =  234 bits (118), Expect = 3e-58
 Identities = 337/410 (82%)
 Strand = Plus / Minus

                                                                        
Query: 269  ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328
            |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 1562 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 1503

                                                                        
Query: 329  cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388
             || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 1502 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 1443

                                                                        
Query: 389  ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448
             |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 1442 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 1383

                                                                        
Query: 449  cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508
            ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 1382 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 1323

                                                                        
Query: 509  tgtgacactctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggcc 568
             || |||||||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| ||
Sbjct: 1322 agtcacactctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgacc 1263

                                                                        
Query: 569  attgtcatgcagtgccccagccaaaatttcgcttgcactggcactttcttcgttgacaag 628
            ||||||||| | ||| || ||||| ||||| |||||||| |||||| |||| ||||||||
Sbjct: 1262 attgtcatgtaatgctcctgccaagatttcacttgcacttgcacttccttcattgacaag 1203

                                                              
Query: 629  caccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678
             || ||||| ||||||||||||||||| |||||  || ||||||||||||
Sbjct: 1202 tacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 1153



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                            
Query: 269      ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328
                |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 12192541 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 12192482

                                                                            
Query: 329      cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388
                 || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 12192481 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 12192422

                                                                            
Query: 389      ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448
                 |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 12192421 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 12192362

                                                                            
Query: 449      cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508
                ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 12192361 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 12192302

                             
Query: 509      tgtgacactctgt 521
                 || |||||||||
Sbjct: 12192301 agtcacactctgt 12192289



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                            
Query: 518      ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 577
                ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 12192173 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 12192114

                                                                
Query: 578      cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 625
                 | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 12192113 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 12192066



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 624      acaagcaccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678
                ||||| || ||||| ||||||||||||||||| |||||  || ||||||||||||
Sbjct: 12191970 acaagtacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 12191916



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>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592B08
          Length = 131096

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                         
Query: 269   ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328
             |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 29563 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 29504

                                                                         
Query: 329   cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388
              || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 29503 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 29444

                                                                         
Query: 389   ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448
              |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 29443 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 29384

                                                                         
Query: 449   cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508
             ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 29383 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 29324

                          
Query: 509   tgtgacactctgt 521
              || |||||||||
Sbjct: 29323 agtcacactctgt 29311



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                         
Query: 518   ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 577
             ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 29195 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 29136

                                                             
Query: 578   cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 625
              | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 29135 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 29088



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 624   acaagcaccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678
             ||||| || ||||| ||||||||||||||||| |||||  || ||||||||||||
Sbjct: 28992 acaagtacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 28938



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>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0468A12
          Length = 143018

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                          
Query: 269    ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 328
              |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 135330 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 135271

                                                                          
Query: 329    cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 388
               || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 135270 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 135211

                                                                          
Query: 389    ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 448
               |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 135210 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 135151

                                                                          
Query: 449    cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 508
              ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 135150 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 135091

                           
Query: 509    tgtgacactctgt 521
               || |||||||||
Sbjct: 135090 agtcacactctgt 135078



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                          
Query: 518    ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 577
              ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 134962 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 134903

                                                              
Query: 578    cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 625
               | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 134902 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 134855



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 624    acaagcaccacaagaggatcatgtgttaaagattggccttggaccatatttattg 678
              ||||| || ||||| ||||||||||||||||| |||||  || ||||||||||||
Sbjct: 134759 acaagtacgacaaggggatcatgtgttaaagaatggccccgggccatatttattg 134705



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>ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-type peptidase
            AT3G57680 mRNA, complete cds
          Length = 1551

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 588  gccaaaatttcgcttgcactggcactttcttcgttgacaagcaccacaagaggatcatgt 647
            ||||||||||| |||||||| |||||| |||| || |||||||| ||||| |||||||||
Sbjct: 1229 gccaaaatttcacttgcactagcacttccttcattcacaagcacaacaagtggatcatgt 1170

              
Query: 648  gt 649
            ||
Sbjct: 1169 gt 1168



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>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon
          Length = 2858

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 564 cggccattgtcatgcagtgccccagccaaaatttc 598
           ||||||||||| || ||||||||||| ||||||||
Sbjct: 263 cggccattgtcttggagtgccccagctaaaatttc 297



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 14       acaacaatacaagttacaatc 34
                |||||||||||||||||||||
Sbjct: 19088221 acaacaatacaagttacaatc 19088201



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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0047A17
          Length = 149142

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    acaacaatacaagttacaatc 34
             |||||||||||||||||||||
Sbjct: 93742 acaacaatacaagttacaatc 93722



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>dbj|AK069352.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N14, full
            insert sequence
          Length = 3604

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 14   acaacaatacaagttacaatc 34
            |||||||||||||||||||||
Sbjct: 1358 acaacaatacaagttacaatc 1338



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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 573     tcatgcagtgccccagccaaaatttcgcttgcactggcact 613
               |||||||||||  |||| |||||||||  ||||||||||||
Sbjct: 1631410 tcatgcagtgctgcagcaaaaatttcggatgcactggcact 1631450



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>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0056I10, complete sequence
          Length = 158833

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   tggtcgatttcgtgcagcgc 454
             ||||||||||||||||||||
Sbjct: 64351 tggtcgatttcgtgcagcgc 64332



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>emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22, complete sequence
          Length = 112797

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   cactctgtattcttcctttg 533
             ||||||||||||||||||||
Sbjct: 26387 cactctgtattcttcctttg 26368



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>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence
          Length = 193572

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 501    tccagctctgtgacactctg 520
              ||||||||||||||||||||
Sbjct: 179913 tccagctctgtgacactctg 179894



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>gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosome 7, complete sequence
          Length = 205352

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   tccagctctgtgacactctg 520
             ||||||||||||||||||||
Sbjct: 12430 tccagctctgtgacactctg 12411



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>emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chromosome 1q25.1-31.1
             Contains the 3' end of the DHX9 gene for DEAH
             (Asp-Glu-Ala-His) box polypeptide 9 and the 3' end of a
             gene for a novel protein, complete sequence
          Length = 42262

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tatttatttacagaggtagt 223
             ||||||||||||||||||||
Sbjct: 26217 tatttatttacagaggtagt 26198



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>emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H3 on chromosome 20 Contains the
             3' end of the ATRN gene for attractin (with
             dipeptidylpeptidase IV activity) (KIAA0548), ESTs, STSs
             and GSSs, complete sequence
          Length = 104907

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 524   tcttcctttgccaaaggttttgtg 547
             |||||||||||||| |||||||||
Sbjct: 75005 tcttcctttgccaatggttttgtg 75028



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>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8
          Length = 94378

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 588   gccaaaatttcgcttgcactggcactttcttc 619
             ||||||||||| |||||||| |||||| ||||
Sbjct: 26832 gccaaaatttcacttgcactagcacttccttc 26863



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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   ttttgtggcctaccagaata 560
             ||||||||||||||||||||
Sbjct: 73783 ttttgtggcctaccagaata 73764



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>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence
          Length = 169106

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   atatttatttacagaggtag 222
             ||||||||||||||||||||
Sbjct: 77128 atatttatttacagaggtag 77109



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>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence
          Length = 38838

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   cgatttcgtgcagcgccgga 458
             ||||||||||||||||||||
Sbjct: 14591 cgatttcgtgcagcgccgga 14572



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>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence
          Length = 210849

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    tatttatttacagaggtagt 223
              ||||||||||||||||||||
Sbjct: 104286 tatttatttacagaggtagt 104305



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>gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp120 C2-C4 region (env) gene,
           partial cds
          Length = 649

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 157 cacactacaatgcagaatacaaca 180
           ||||||||||||||||||| ||||
Sbjct: 406 cacactacaatgcagaataaaaca 429



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 435      tggtcgatttcgtgcagcgc 454
                ||||||||||||||||||||
Sbjct: 18328986 tggtcgatttcgtgcagcgc 18328967



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>gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ASLV retrovirus gag
           pseudogene, partial sequence
          Length = 826

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 584 cccagccaaaatttcgcttg 603
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248



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>gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 825

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 584 cccagccaaaatttcgcttg 603
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248



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>gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 777

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 584 cccagccaaaatttcgcttg 603
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248



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>gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 584 cccagccaaaatttcgcttg 603
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 435      tggtcgatttcgtgcagcgc 454
                ||||||||||||||||||||
Sbjct: 18488387 tggtcgatttcgtgcagcgc 18488368



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>emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in linkage group 21,
             complete sequence
          Length = 136791

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   ttttgtggcctaccagaata 560
             ||||||||||||||||||||
Sbjct: 48247 ttttgtggcctaccagaata 48266



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>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete
            sequence
          Length = 228603

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 623  gacaagcaccacaagaggat 642
            ||||||||||||||||||||
Sbjct: 3990 gacaagcaccacaagaggat 3971



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>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence
          Length = 206647

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 524   tcttcctttgccaaaggttttgtg 547
             |||||||||||||| |||||||||
Sbjct: 99680 tcttcctttgccaatggttttgtg 99703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,196,591
Number of Sequences: 3902068
Number of extensions: 5196591
Number of successful extensions: 90660
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90479
Number of HSP's gapped (non-prelim): 180
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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