| Clone Name | bags14o13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1062 Score = 442 bits (223), Expect = e-121 Identities = 543/647 (83%), Gaps = 2/647 (0%) Strand = Plus / Plus Query: 2 ctccctcatcaccggcgagctccacatgttccgctacgccgacg-gtctgccgctcgaga 60 |||||||||||||||||||||| || ||||||| ||||||| | ||| || || |||| Sbjct: 69 ctccctcatcaccggcgagctctacctgttccggtacgccgcggagtc-gcagcctgaga 127 Query: 61 ggttgttcgcagaaaaaccccacaaggactcatgcagggctgttcgatttgtggactcgg 120 ||||||| || | |||| | |||||||| |||||||| ||||| || |||||||| |||| Sbjct: 128 ggttgtttgcggcaaaatctcacaaggagtcatgcagagctgtccggtttgtggagtcgg 187 Query: 121 gaactgtgattctgacggggtctgctgatatgtcgattgtcgcttctgatgtagaaacag 180 ||| ||||||| |||| || ||||||||| || ||| | || |||||||| ||||| | Sbjct: 188 gaaatgtgattttgacaggatctgctgattgctcaattcttgcctctgatgtggaaactg 247 Query: 181 gcaaagtcattgcccgtttggatgatgcacatggtgacgccataaaccgccttgtgtgtc 240 ||||| |||||| || ||||| |||||||||| | | |||||| ||||||||||||| Sbjct: 248 gcaaacccattgctcgcttggaggatgcacatgagaatggcataaatcgccttgtgtgtc 307 Query: 241 ttactgaaactacagttgcttcaggcgatgatgcgggttgcattaaggtgtgggatactc 300 ||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||| Sbjct: 308 ttactgaaactactgttgcttcaggtgatgatgaaggttgcattaaggtatgggatactc 367 Query: 301 gacaacgatcttgctgcaacacttttcaccgccatgaagattatatatcagatatgacct 360 | |||| || ||||| ||||| |||||| |||| |||||||| |||||||||||||| | Sbjct: 368 gggaacgttcctgctgtaacacctttcactgccacgaagattacatatcagatatgacat 427 Query: 361 atgtagctggctcagatcaaatattggccacaagtggtgatggaactttatctgttaaca 420 ||||| ||| |||| ||||||| |||| |||||||| || || ||||||||||| | || Sbjct: 428 atgtatctgactcaactcaaatactggcaacaagtggcgacgggactttatctgtcagca 487 Query: 421 gtctccggggtaacagagtaaaatcgcaatctgaattttcagaagacgaactcctatctt 480 ||| || | || | ||||||||| |||||||||||||||||||| || | |||||| Sbjct: 488 atcttcgtaggaataaagtaaaatcacaatctgaattttcagaagatgagttactatctg 547 Query: 481 tggtgataatgaagaatggccaaaaagttgtttgtggaactccaagtggagccctgttgt 540 ||||| |||||||||| || |||||||||| ||||| || ||||||||||| ||||||| Sbjct: 548 tggtggtaatgaagaacggtaaaaaagttgtatgtggcaccccaagtggagctctgttgt 607 Query: 541 tgtattcgtggggacattttaaggactgcagtgaccgttttctggggcacgcacagtctg 600 | ||||| |||||| ||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 608 tatattcatggggattttttaaggattgcagtgaccgctttctggggcatgcacagtctg 667 Query: 601 ttgataacttgctgaagctggacgaagaaactctgatatctgctgca 647 |||||| ||||||||||||| ||||||||||| ||||||| |||| Sbjct: 668 ttgatacaatgctgaagctggatgaagaaactctaatatctggtgca 714
>dbj|AK119617.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G09, full insert sequence Length = 1455 Score = 442 bits (223), Expect = e-121 Identities = 543/647 (83%), Gaps = 2/647 (0%) Strand = Plus / Plus Query: 2 ctccctcatcaccggcgagctccacatgttccgctacgccgacg-gtctgccgctcgaga 60 |||||||||||||||||||||| || ||||||| ||||||| | ||| || || |||| Sbjct: 166 ctccctcatcaccggcgagctctacctgttccggtacgccgcggagtc-gcagcctgaga 224 Query: 61 ggttgttcgcagaaaaaccccacaaggactcatgcagggctgttcgatttgtggactcgg 120 ||||||| || | |||| | |||||||| |||||||| ||||| || |||||||| |||| Sbjct: 225 ggttgtttgcggcaaaatctcacaaggagtcatgcagagctgtccggtttgtggagtcgg 284 Query: 121 gaactgtgattctgacggggtctgctgatatgtcgattgtcgcttctgatgtagaaacag 180 ||| ||||||| |||| || ||||||||| || ||| | || |||||||| ||||| | Sbjct: 285 gaaatgtgattttgacaggatctgctgattgctcaattcttgcctctgatgtggaaactg 344 Query: 181 gcaaagtcattgcccgtttggatgatgcacatggtgacgccataaaccgccttgtgtgtc 240 ||||| |||||| || ||||| |||||||||| | | |||||| ||||||||||||| Sbjct: 345 gcaaacccattgctcgcttggaggatgcacatgagaatggcataaatcgccttgtgtgtc 404 Query: 241 ttactgaaactacagttgcttcaggcgatgatgcgggttgcattaaggtgtgggatactc 300 ||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||| Sbjct: 405 ttactgaaactactgttgcttcaggtgatgatgaaggttgcattaaggtatgggatactc 464 Query: 301 gacaacgatcttgctgcaacacttttcaccgccatgaagattatatatcagatatgacct 360 | |||| || ||||| ||||| |||||| |||| |||||||| |||||||||||||| | Sbjct: 465 gggaacgttcctgctgtaacacctttcactgccacgaagattacatatcagatatgacat 524 Query: 361 atgtagctggctcagatcaaatattggccacaagtggtgatggaactttatctgttaaca 420 ||||| ||| |||| ||||||| |||| |||||||| || || ||||||||||| | || Sbjct: 525 atgtatctgactcaactcaaatactggcaacaagtggcgacgggactttatctgtcagca 584 Query: 421 gtctccggggtaacagagtaaaatcgcaatctgaattttcagaagacgaactcctatctt 480 ||| || | || | ||||||||| |||||||||||||||||||| || | |||||| Sbjct: 585 atcttcgtaggaataaagtaaaatcacaatctgaattttcagaagatgagttactatctg 644 Query: 481 tggtgataatgaagaatggccaaaaagttgtttgtggaactccaagtggagccctgttgt 540 ||||| |||||||||| || |||||||||| ||||| || ||||||||||| ||||||| Sbjct: 645 tggtggtaatgaagaacggtaaaaaagttgtatgtggcaccccaagtggagctctgttgt 704 Query: 541 tgtattcgtggggacattttaaggactgcagtgaccgttttctggggcacgcacagtctg 600 | ||||| |||||| ||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 705 tatattcatggggattttttaaggattgcagtgaccgctttctggggcatgcacagtctg 764 Query: 601 ttgataacttgctgaagctggacgaagaaactctgatatctgctgca 647 |||||| ||||||||||||| ||||||||||| ||||||| |||| Sbjct: 765 ttgatacaatgctgaagctggatgaagaaactctaatatctggtgca 811
>gb|AY108434.1| Zea mays PCO081717 mRNA sequence Length = 1064 Score = 268 bits (135), Expect = 2e-68 Identities = 450/555 (81%) Strand = Plus / Plus Query: 74 aaaaccccacaaggactcatgcagggctgttcgatttgtggactcgggaactgtgattct 133 |||| |||||||||| |||||||| |||||||| ||||||||||| |||| |||||| | Sbjct: 207 aaaagcccacaaggagtcatgcagagctgttcgttttgtggactcaggaaaagtgatttt 266 Query: 134 gacggggtctgctgatatgtcgattgtcgcttctgatgtagaaacaggcaaagtcattgc 193 | | ||||| |||||| || || | || || ||||||||| | ||||| | |||||| Sbjct: 267 gtcagggtcagctgattgctcagttcttgcctcagatgtagaatcgggcaaggccattgc 326 Query: 194 ccgtttggatgatgcacatggtgacgccataaaccgccttgtgtgtcttactgaaactac 253 ||| ||||| |||||||||| | ||||||||||||||||| |||||||||||| |||| Sbjct: 327 ccgcttggaggatgcacatgagaatgccataaaccgccttgtctgtcttactgaatctac 386 Query: 254 agttgcttcaggcgatgatgcgggttgcattaaggtgtgggatactcgacaacgatcttg 313 | |||| |||| ||||||| || ||||||||||| |||||||| || | |||||||| Sbjct: 387 aattgccacaggtgatgatgaaggctgcattaaggtatgggatacccgggagcgatcttg 446 Query: 314 ctgcaacacttttcaccgccatgaagattatatatcagatatgacctatgtagctggctc 373 |||||||| |||| | ||| || ||||| || ||||||||||||||||| |||| | Sbjct: 447 ctgcaacagttttgaagtccacgatgattacatttcagatatgacctatgtggctgagac 506 Query: 374 agatcaaatattggccacaagtggtgatggaactttatctgttaacagtctccggggtaa 433 | |||| ||| ||||||||||||| ||||||||||| ||||| |||| || ||| | || Sbjct: 507 aaatcagatactggccacaagtggggatggaactttgtctgtgaacaacctgcggaggaa 566 Query: 434 cagagtaaaatcgcaatctgaattttcagaagacgaactcctatctttggtgataatgaa 493 | ||||| || | |||||||||||||||||| || | ||||| |||||| ||||||| Sbjct: 567 taaagtaaggtcacgatctgaattttcagaagatgagttgctatccttggtgttaatgaa 626 Query: 494 gaatggccaaaaagttgtttgtggaactccaagtggagccctgttgttgtattcgtgggg 553 | |||| |||| ||||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 627 gcatggtaaaaaggttgtgtgtggaactccaagtggagcactcttattatattcatgggg 686 Query: 554 acattttaaggactgcagtgaccgttttctggggcacgcacagtctgttgataacttgct 613 | | ||||| || ||||||||||| ||| | || ||| | |||||||| |||| |||| Sbjct: 687 atactttaatgattgcagtgaccgctttatcggacacacgcagtctgtggatacaatgct 746 Query: 614 gaagctggacgaaga 628 ||||||||| ||||| Sbjct: 747 gaagctggatgaaga 761
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 221 cataaaccgccttgtgtgtcttactgaaactacagttgcttcaggcgatgatgcgggttg 280 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct: 27798585 cataaatcgccttgtgtgtcttactgaaactactgttgcttcaggtgatgatgaaggttg 27798644 Query: 281 cattaaggt 289 ||||||||| Sbjct: 27798645 cattaaggt 27798653 Score = 81.8 bits (41), Expect = 3e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 286 aggtgtgggatactcgacaacgatcttgctgcaacacttttcaccgccatgaagattata 345 |||| ||||||||||| |||| || ||||| ||||| |||||| |||| |||||||| | Sbjct: 27798973 aggtatgggatactcgggaacgttcctgctgtaacacctttcactgccacgaagattaca 27799032 Query: 346 tatcagatatgacctatgtagctggctcagatcaaatattggccacaag 394 ||||||||||||| |||||| ||| |||| ||||||| |||| ||||| Sbjct: 27799033 tatcagatatgacatatgtatctgactcaactcaaatactggcaacaag 27799081 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 502 aaaaagttgtttgtggaactccaagtggagccctgttgttgtattcgtggggacatttta 561 |||||||||| ||||| || ||||||||||| |||||||| ||||| |||||| ||||| Sbjct: 27799912 aaaaagttgtatgtggcaccccaagtggagctctgttgttatattcatggggatttttta 27799971 Query: 562 aggactgcag 571 |||| ||||| Sbjct: 27799972 aggattgcag 27799981 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 570 agtgaccgttttctggggcacgcacagtctgttgata 606 |||||||| ||||||||||| |||||||||||||||| Sbjct: 27800219 agtgaccgctttctggggcatgcacagtctgttgata 27800255 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 438 gtaaaatcgcaatctgaattttcagaagacgaactcctatctttggtgataatgaag 494 |||||||| |||||||||||||||||||| || | |||||| ||||| |||||||| Sbjct: 27799760 gtaaaatcacaatctgaattttcagaagatgagttactatctgtggtggtaatgaag 27799816 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 ctccctcatcaccggcgagctc 23 |||||||||||||||||||||| Sbjct: 27797383 ctccctcatcaccggcgagctc 27797404 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 616 agctggacgaagaaactctgatatctgctgca 647 ||||||| ||||||||||| ||||||| |||| Sbjct: 27800362 agctggatgaagaaactctaatatctggtgca 27800393
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 221 cataaaccgccttgtgtgtcttactgaaactacagttgcttcaggcgatgatgcgggttg 280 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct: 90964 cataaatcgccttgtgtgtcttactgaaactactgttgcttcaggtgatgatgaaggttg 91023 Query: 281 cattaaggt 289 ||||||||| Sbjct: 91024 cattaaggt 91032 Score = 81.8 bits (41), Expect = 3e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 286 aggtgtgggatactcgacaacgatcttgctgcaacacttttcaccgccatgaagattata 345 |||| ||||||||||| |||| || ||||| ||||| |||||| |||| |||||||| | Sbjct: 91352 aggtatgggatactcgggaacgttcctgctgtaacacctttcactgccacgaagattaca 91411 Query: 346 tatcagatatgacctatgtagctggctcagatcaaatattggccacaag 394 ||||||||||||| |||||| ||| |||| ||||||| |||| ||||| Sbjct: 91412 tatcagatatgacatatgtatctgactcaactcaaatactggcaacaag 91460 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 502 aaaaagttgtttgtggaactccaagtggagccctgttgttgtattcgtggggacatttta 561 |||||||||| ||||| || ||||||||||| |||||||| ||||| |||||| ||||| Sbjct: 92291 aaaaagttgtatgtggcaccccaagtggagctctgttgttatattcatggggatttttta 92350 Query: 562 aggactgcag 571 |||| ||||| Sbjct: 92351 aggattgcag 92360 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 570 agtgaccgttttctggggcacgcacagtctgttgata 606 |||||||| ||||||||||| |||||||||||||||| Sbjct: 92598 agtgaccgctttctggggcatgcacagtctgttgata 92634 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 438 gtaaaatcgcaatctgaattttcagaagacgaactcctatctttggtgataatgaag 494 |||||||| |||||||||||||||||||| || | |||||| ||||| |||||||| Sbjct: 92139 gtaaaatcacaatctgaattttcagaagatgagttactatctgtggtggtaatgaag 92195 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 ctccctcatcaccggcgagctc 23 |||||||||||||||||||||| Sbjct: 89762 ctccctcatcaccggcgagctc 89783 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 616 agctggacgaagaaactctgatatctgctgca 647 ||||||| ||||||||||| ||||||| |||| Sbjct: 92741 agctggatgaagaaactctaatatctggtgca 92772
>emb|BX822014.1|CNS0A89S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL92ZA12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1223 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 624 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 683 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | |||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 684 tgtggaactcagaatggaactctcttgttgtattcatggggatttttcaaggattgcag 742
>ref|NM_201867.1| Arabidopsis thaliana nucleotide binding AT2G34260 transcript variant AT2G34260.2 mRNA, complete cds Length = 1260 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 624 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 683 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | ||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 684 tgtggaactcagaatggtactctcttgttgtattcatggggatttttcaaggattgcag 742
>ref|NM_128977.2| Arabidopsis thaliana nucleotide binding AT2G34260 transcript variant AT2G34260.1 mRNA, complete cds Length = 1221 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 570 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 629 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | ||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 630 tgtggaactcagaatggtactctcttgttgtattcatggggatttttcaaggattgcag 688
>emb|BX820198.1|CNS0AA29 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS91ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1049 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 394 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 453 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | ||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 454 tgtggaactcagaatggtactctcttgttgtattcatggggatttttcaaggattgcag 512
>gb|BT005438.1| Arabidopsis thaliana clone U50579 putative G-protein beta-subunit (transducin) (At2g34260) mRNA, complete cds Length = 1093 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 520 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 579 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | ||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 580 tgtggaactcagaatggtactctcttgttgtattcatggggatttttcaaggattgcag 638
>gb|AY087666.1| Arabidopsis thaliana clone 37499 mRNA, complete sequence Length = 1221 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 570 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 629 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | ||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 630 tgtggaactcagaatggtactctcttgttgtattcatggggatttttcaaggattgcag 688
>dbj|AK117481.1| Arabidopsis thaliana At2g34260 mRNA for unknown protein, complete cds, clone: RAFL17-09-G21 Length = 1206 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 453 gaattttcagaagacgaactcctatctttggtgataatgaagaatggccaaaaagttgtt 512 |||||||| ||||| ||||| || ||| | || |||||||||||||||| |||||| | Sbjct: 570 gaattttctgaagatgaactactttctgttgttataatgaagaatggccgtaaagttatc 629 Query: 513 tgtggaactccaagtggagccctgttgttgtattcgtggggacattttaaggactgcag 571 |||||||||| | ||| | || ||||||||||| |||||| ||| ||||| ||||| Sbjct: 630 tgtggaactcagaatggtactctcttgttgtattcatggggatttttcaaggattgcag 688
>gb|AC104844.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030L19, complete sequence Length = 128848 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 443 atcgcaatctgaattttcagaa 464 |||||||||||||||||||||| Sbjct: 117832 atcgcaatctgaattttcagaa 117853
>emb|AL807757.9| Human DNA sequence from clone RP11-49O14 on chromosome 9 Contains two novel genes, complete sequence Length = 93279 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 487 taatgaagaatggccaaaaagt 508 |||||||||||||||||||||| Sbjct: 89309 taatgaagaatggccaaaaagt 89330
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 443 atcgcaatctgaattttcagaa 464 |||||||||||||||||||||| Sbjct: 138328 atcgcaatctgaattttcagaa 138307
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 443 atcgcaatctgaattttcagaa 464 |||||||||||||||||||||| Sbjct: 23248647 atcgcaatctgaattttcagaa 23248668
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 443 atcgcaatctgaattttcagaa 464 |||||||||||||||||||||| Sbjct: 23558557 atcgcaatctgaattttcagaa 23558578
>emb|CR729006.2|CNS0GPG4 Tetraodon nigroviridis full-length cDNA Length = 1042 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 tgctgaagctggacgaagaaa 630 ||||||||||||||||||||| Sbjct: 67 tgctgaagctggacgaagaaa 87
>emb|AL133460.16| Human DNA sequence from clone RP5-974F1 on chromosome 6, complete sequence Length = 25660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 tttggtgataatgaagaatgg 499 ||||||||||||||||||||| Sbjct: 8782 tttggtgataatgaagaatgg 8802
>gb|AF517634.1| Drosophila melanogaster BIR-containing ubiquitin-conjugating enzyme (Bruce) mRNA, complete cds Length = 14794 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gcaaagtcattgcccgtttgg 201 ||||||||||||||||||||| Sbjct: 7182 gcaaagtcattgcccgtttgg 7202
>ref|NM_141738.3| Drosophila melanogaster Bruce CG6303-RA (Bruce), mRNA Length = 14793 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gcaaagtcattgcccgtttgg 201 ||||||||||||||||||||| Sbjct: 7181 gcaaagtcattgcccgtttgg 7201
>gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86A-86A, BAC clone BACR03L12, complete sequence Length = 190672 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gcaaagtcattgcccgtttgg 201 ||||||||||||||||||||| Sbjct: 56117 gcaaagtcattgcccgtttgg 56097
>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete sequence Length = 223505 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gcaaagtcattgcccgtttgg 201 ||||||||||||||||||||| Sbjct: 160453 gcaaagtcattgcccgtttgg 160433
>gb|AC100180.12| Mus musculus chromosome 1, clone RP23-53J14, complete sequence Length = 188055 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 atgaagattatatatcagat 353 |||||||||||||||||||| Sbjct: 115113 atgaagattatatatcagat 115094
>ref|XM_652873.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0361.2), mRNA Length = 3843 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ctggggcacgcacagtctgt 601 |||||||||||||||||||| Sbjct: 1339 ctggggcacgcacagtctgt 1320
>ref|XM_801267.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511297.10) partial mRNA Length = 6591 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 ttgcttcaggcgatgatgcgggtt 279 |||||||||||||| ||||||||| Sbjct: 6004 ttgcttcaggcgattatgcgggtt 6027
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tgaaactacagttgcttcag 264 |||||||||||||||||||| Sbjct: 20789 tgaaactacagttgcttcag 20770
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 484 tgataatgaagaatggccaaaaag 507 |||||| ||||||||||||||||| Sbjct: 1746153 tgataaagaagaatggccaaaaag 1746130
>emb|AL356801.5|CNS05TDJ Human chromosome 14 DNA sequence BAC R-454L9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158608 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 atatatcagatatgacctat 362 |||||||||||||||||||| Sbjct: 120604 atatatcagatatgacctat 120585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,972,108 Number of Sequences: 3902068 Number of extensions: 4972108 Number of successful extensions: 85591 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85394 Number of HSP's gapped (non-prelim): 186 length of query: 653 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 630 effective length of database: 17,143,297,704 effective search space: 10800277553520 effective search space used: 10800277553520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)