ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474856.1| Oryza sativa (japonica cultivar-group), predic... 210 1e-51
2dbj|AK100406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 1e-51
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 168 3e-39
4emb|AJ535073.1|OSA535073 Oryza sativa (japonica cultivar-group) ... 168 3e-39
5emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4,... 168 3e-39
6ref|XM_474857.1| Oryza sativa (japonica cultivar-group), predic... 103 2e-19
7dbj|AK120122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 2e-19
8emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4,... 76 4e-11
9emb|AJ535072.1|OSA535072 Oryza sativa (japonica cultivar-group) ... 76 4e-11
10gb|AC137976.13| Mus musculus chromosome 8, clone RP23-262K12, co... 46 0.034
11gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complet... 46 0.034
12emb|AL356737.9| Human DNA sequence from clone RP11-118A1 on chro... 42 0.53
13gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
14gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 40 2.1
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
17dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
19gb|AC120364.7| Mus musculus chromosome 8, clone RP24-291F20, com... 38 8.3
20gb|AC183639.2| Pan troglodytes chromosome X clone PTB-24B10 map ... 38 8.3
21gb|AC129580.14| Mus musculus chromosome 14, clone RP24-149P3, co... 38 8.3
22gb|AC184800.2| Pan troglodytes chromosome X clone PTB-18K16 map ... 38 8.3
23gb|AC004896.1| Homo sapiens PAC clone RP4-811H12 from 7, complet... 38 8.3
24gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosom... 38 8.3
25gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome... 38 8.3
26gb|AC104231.10| Homo sapiens chromosome 15, clone RP11-96H23, co... 38 8.3
27gb|AC026882.6| Homo sapiens chromosome 3 clone RP11-211K13 map 3... 38 8.3
28gb|AC122202.4| Mus musculus BAC clone RP23-68P6 from 19, complet... 38 8.3
29emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on ch... 38 8.3
30emb|AL109829.21|HSJ832E24 Human DNA sequence from clone RP5-832E... 38 8.3
31emb|AL022578.1|HS393P12 Human DNA sequence from clone RP3-393P12... 38 8.3
32emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 38 8.3
33gb|AC183493.1| Brassica oleracea Contig B, complete sequence 38 8.3
34gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, com... 38 8.3
35gb|AC009032.8| Homo sapiens chromosome 16 clone RP11-140H17, com... 38 8.3
36dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
37gb|AC093806.2| Homo sapiens BAC clone RP11-327P24 from 2, comple... 38 8.3
38gb|AC025430.5|AC025430 Homo sapiens chromosome 15 clone CTD-2329... 38 8.3
39gb|AC079753.7| Homo sapiens BAC clone RP11-67L14 from 2, complet... 38 8.3
40gb|AC025614.12|AC025614 Homo sapiens chromosome 3 clone RP11-69K... 38 8.3
41dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
42dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
43emb|BX005313.4| Zebrafish DNA sequence from clone CH211-119C24, ... 38 8.3
44tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete int... 38 8.3
45emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4,... 38 8.3
46emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chr... 38 8.3
47emb|AJ509090.1|HSA509090 Homo sapiens WASF4 gene for Wiskott-Ald... 38 8.3 
>ref|XM_474856.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4638

 Score =  210 bits (106), Expect = 1e-51
 Identities = 152/169 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    attcaagtttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgac 60
            |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 3575 attcaagtttgcgcatgtacttccacaattatgcagcaaatgaatggcttgggttccgtc 3634

                                                                        
Query: 61   tggagctgattggaacactcgtattgncaatcactgctttcctgatgatcancttgccca 120
            ||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |   |||| |
Sbjct: 3635 tggagttgattgggacactcgtattggcaataactgctttccttatgattagtctgccta 3694

                                                             
Query: 121  gcaattttattaagaaagaatttgnnggcatgtctctttcgtatggcct 169
            |||||||||| |||||||||||||  |||||||||||||| ||||||||
Sbjct: 3695 gcaattttatcaagaaagaatttgttggcatgtctctttcatatggcct 3743
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>dbj|AK100406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C13, full
            insert sequence
          Length = 4081

 Score =  210 bits (106), Expect = 1e-51
 Identities = 152/169 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    attcaagtttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgac 60
            |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 2775 attcaagtttgcgcatgtacttccacaattatgcagcaaatgaatggcttgggttccgtc 2834

                                                                        
Query: 61   tggagctgattggaacactcgtattgncaatcactgctttcctgatgatcancttgccca 120
            ||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |   |||| |
Sbjct: 2835 tggagttgattgggacactcgtattggcaataactgctttccttatgattagtctgccta 2894

                                                             
Query: 121  gcaattttattaagaaagaatttgnnggcatgtctctttcgtatggcct 169
            |||||||||| |||||||||||||  |||||||||||||| ||||||||
Sbjct: 2895 gcaattttatcaagaaagaatttgttggcatgtctctttcatatggcct 2943
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  168 bits (85), Expect = 3e-39
 Identities = 124/138 (89%)
 Strand = Plus / Minus

                                                                           
Query: 1       attcaagtttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgac 60
               |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 7266332 attcaagtttgcgcatgtacttccacaattatgcagcaaatgaatggcttgggttccgtc 7266273

                                                                           
Query: 61      tggagctgattggaacactcgtattgncaatcactgctttcctgatgatcancttgccca 120
               ||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |   |||| |
Sbjct: 7266272 tggagttgattgggacactcgtattggcaataactgctttccttatgattagtctgccta 7266213

                                 
Query: 121     gcaattttattaagaaag 138
               |||||||||| |||||||
Sbjct: 7266212 gcaattttatcaagaaag 7266195



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 107/131 (81%)
 Strand = Plus / Minus

                                                                           
Query: 8       tttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgactggagct 67
               |||||||||||  || || ||||||| ||| ||||||||||| || || || |||||| |
Sbjct: 7281525 tttgcgcatgtcttttcataattatggagctaatgagtggctgggttttcgcctggagtt 7281466

                                                                           
Query: 68      gattggaacactcgtattgncaatcactgctttcctgatgatcancttgcccagcaattt 127
               |||||| |||||  || || | || |||||||| || ||||||| |||||| ||||||||
Sbjct: 7281465 gattggcacacttctactgtctataactgcttttcttatgatcagcttgcctagcaattt 7281406

                          
Query: 128     tattaagaaag 138
                || |||||||
Sbjct: 7281405 catcaagaaag 7281395



 Score = 46.1 bits (23), Expect = 0.034
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 137     agaatttgnnggcatgtctctttcgtatggcct 169
               ||||||||  |||||||||||||| ||||||||
Sbjct: 7265868 agaatttgttggcatgtctctttcatatggcct 7265836



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 124      attttattaagaaagaatt 142
                |||||||||||||||||||
Sbjct: 11200911 attttattaagaaagaatt 11200929
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>emb|AJ535073.1|OSA535073 Oryza sativa (japonica cultivar-group) mrp9 gene for MRP-like ABC
            transporter, exons 1-11
          Length = 11279

 Score =  168 bits (85), Expect = 3e-39
 Identities = 124/138 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    attcaagtttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgac 60
            |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 8691 attcaagtttgcgcatgtacttccacaattatgcagcaaatgaatggcttgggttccgtc 8750

                                                                        
Query: 61   tggagctgattggaacactcgtattgncaatcactgctttcctgatgatcancttgccca 120
            ||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |   |||| |
Sbjct: 8751 tggagttgattgggacactcgtattggcaataactgctttccttatgattagtctgccta 8810

                              
Query: 121  gcaattttattaagaaag 138
            |||||||||| |||||||
Sbjct: 8811 gcaattttatcaagaaag 8828



 Score = 46.1 bits (23), Expect = 0.034
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 137  agaatttgnnggcatgtctctttcgtatggcct 169
            ||||||||  |||||||||||||| ||||||||
Sbjct: 9155 agaatttgttggcatgtctctttcatatggcct 9187
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>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13,
              complete sequence
          Length = 143298

 Score =  168 bits (85), Expect = 3e-39
 Identities = 124/138 (89%)
 Strand = Plus / Minus

                                                                          
Query: 1      attcaagtttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgac 60
              |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 130069 attcaagtttgcgcatgtacttccacaattatgcagcaaatgaatggcttgggttccgtc 130010

                                                                          
Query: 61     tggagctgattggaacactcgtattgncaatcactgctttcctgatgatcancttgccca 120
              ||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |   |||| |
Sbjct: 130009 tggagttgattgggacactcgtattggcaataactgctttccttatgattagtctgccta 129950

                                
Query: 121    gcaattttattaagaaag 138
              |||||||||| |||||||
Sbjct: 129949 gcaattttatcaagaaag 129932



 Score = 46.1 bits (23), Expect = 0.034
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 137    agaatttgnnggcatgtctctttcgtatggcct 169
              ||||||||  |||||||||||||| ||||||||
Sbjct: 129605 agaatttgttggcatgtctctttcatatggcct 129573
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>ref|XM_474857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4539

 Score =  103 bits (52), Expect = 2e-19
 Identities = 131/159 (82%)
 Strand = Plus / Plus

                                                                        
Query: 8    tttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgactggagct 67
            |||||||||||  || || ||||||| ||| ||||||||||| || || || |||||| |
Sbjct: 3471 tttgcgcatgtcttttcataattatggagctaatgagtggctgggttttcgcctggagtt 3530

                                                                        
Query: 68   gattggaacactcgtattgncaatcactgctttcctgatgatcancttgcccagcaattt 127
            |||||| |||||  || || | || |||||||| || ||||||| |||||| ||||||||
Sbjct: 3531 gattggcacacttctactgtctataactgcttttcttatgatcagcttgcctagcaattt 3590

                                                   
Query: 128  tattaagaaagaatttgnnggcatgtctctttcgtatgg 166
             || |||||||| ||||  |||||||| |||||||||||
Sbjct: 3591 catcaagaaagagtttgtcggcatgtccctttcgtatgg 3629
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>dbj|AK120122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026A05, full
            insert sequence
          Length = 4968

 Score =  103 bits (52), Expect = 2e-19
 Identities = 131/159 (82%)
 Strand = Plus / Plus

                                                                        
Query: 8    tttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgactggagct 67
            |||||||||||  || || ||||||| ||| ||||||||||| || || || |||||| |
Sbjct: 3588 tttgcgcatgtcttttcataattatggagctaatgagtggctgggttttcgcctggagtt 3647

                                                                        
Query: 68   gattggaacactcgtattgncaatcactgctttcctgatgatcancttgcccagcaattt 127
            |||||| |||||  || || | || |||||||| || ||||||| |||||| ||||||||
Sbjct: 3648 gattggcacacttctactgtctataactgcttttcttatgatcagcttgcctagcaattt 3707

                                                   
Query: 128  tattaagaaagaatttgnnggcatgtctctttcgtatgg 166
             || |||||||| ||||  |||||||| |||||||||||
Sbjct: 3708 catcaagaaagagtttgtcggcatgtccctttcgtatgg 3746
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>emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022P19,
            complete sequence
          Length = 135836

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 107/131 (81%)
 Strand = Plus / Minus

                                                                        
Query: 8    tttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgactggagct 67
            |||||||||||  || || ||||||| ||| ||||||||||| || || || |||||| |
Sbjct: 8895 tttgcgcatgtcttttcataattatggagctaatgagtggctgggttttcgcctggagtt 8836

                                                                        
Query: 68   gattggaacactcgtattgncaatcactgctttcctgatgatcancttgcccagcaattt 127
            |||||| |||||  || || | || |||||||| || ||||||| |||||| ||||||||
Sbjct: 8835 gattggcacacttctactgtctataactgcttttcttatgatcagcttgcctagcaattt 8776

                       
Query: 128  tattaagaaag 138
             || |||||||
Sbjct: 8775 catcaagaaag 8765
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>emb|AJ535072.1|OSA535072 Oryza sativa (japonica cultivar-group) mrp10 gene for MRP-like ABC
            transporter, exons 1-11
          Length = 8122

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 107/131 (81%)
 Strand = Plus / Plus

                                                                        
Query: 8    tttgcgcatgtacttncacaattatgcagcaaatgagtggcttgggttccgactggagct 67
            |||||||||||  || || ||||||| ||| ||||||||||| || || || |||||| |
Sbjct: 6075 tttgcgcatgtcttttcataattatggagctaatgagtggctgggttttcgcctggagtt 6134

                                                                        
Query: 68   gattggaacactcgtattgncaatcactgctttcctgatgatcancttgcccagcaattt 127
            |||||| |||||  || || | || |||||||| || ||||||| |||||| ||||||||
Sbjct: 6135 gattggcacacttctactgtctataactgcttttcttatgatcagcttgcctagcaattt 6194

                       
Query: 128  tattaagaaag 138
             || |||||||
Sbjct: 6195 catcaagaaag 6205
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>gb|AC137976.13| Mus musculus chromosome 8, clone RP23-262K12, complete sequence
          Length = 238720

 Score = 46.1 bits (23), Expect = 0.034
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 118   ccagcaattttattaagaaagaatttg 144
             ||||||||||| |||||||||||||||
Sbjct: 58930 ccagcaatttttttaagaaagaatttg 58904
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>gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complete sequence
          Length = 177236

 Score = 46.1 bits (23), Expect = 0.034
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 118    ccagcaattttattaagaaagaatttg 144
              ||||||||||| |||||||||||||||
Sbjct: 167269 ccagcaatttttttaagaaagaatttg 167243
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>emb|AL356737.9| Human DNA sequence from clone RP11-118A1 on chromosome 13 Contains 2
              novel genes, complete sequence
          Length = 120269

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     ctggagctgattggaacactc 80
              |||||||||||||||||||||
Sbjct: 112136 ctggagctgattggaacactc 112116
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>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16,
              complete sequence
          Length = 137872

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    aattttattaagaaagaatt 142
              ||||||||||||||||||||
Sbjct: 101344 aattttattaagaaagaatt 101363
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>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic
              sequence, complete sequence
          Length = 147289

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    aattttattaagaaagaatt 142
              ||||||||||||||||||||
Sbjct: 114279 aattttattaagaaagaatt 114260
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 123     aattttattaagaaagaatt 142
               ||||||||||||||||||||
Sbjct: 6429950 aattttattaagaaagaatt 6429969
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 80       cgtattgncaatcactgctttcc 102
                ||||||| |||||||||||||||
Sbjct: 35913985 cgtattgtcaatcactgctttcc 35913963
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>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D11
          Length = 138108

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 80    cgtattgncaatcactgctttcc 102
             ||||||| |||||||||||||||
Sbjct: 12663 cgtattgtcaatcactgctttcc 12641
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 123     aattttattaagaaagaatt 142
               ||||||||||||||||||||
Sbjct: 6496418 aattttattaagaaagaatt 6496437
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>gb|AC120364.7| Mus musculus chromosome 8, clone RP24-291F20, complete sequence
          Length = 193257

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 30    tatgcagcaaatgagtggcttgg 52
             ||||||||||||| |||||||||
Sbjct: 55936 tatgcagcaaatgtgtggcttgg 55958
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>gb|AC183639.2| Pan troglodytes chromosome X clone PTB-24B10 map human ortholog
           p11.23, complete sequence
          Length = 183185

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 agcaattttattaagaaag 138
           |||||||||||||||||||
Sbjct: 728 agcaattttattaagaaag 746
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>gb|AC129580.14| Mus musculus chromosome 14, clone RP24-149P3, complete sequence
          Length = 185100

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    aattatgcagcaaatgagt 45
             |||||||||||||||||||
Sbjct: 32089 aattatgcagcaaatgagt 32107
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>gb|AC184800.2| Pan troglodytes chromosome X clone PTB-18K16 map human ortholog p11.23,
              complete sequence
          Length = 142154

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    agcaattttattaagaaag 138
              |||||||||||||||||||
Sbjct: 131923 agcaattttattaagaaag 131941
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>gb|AC004896.1| Homo sapiens PAC clone RP4-811H12 from 7, complete sequence
          Length = 162215

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 24528 agcaattttattaagaaag 24546
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>gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosome 10, complete
            sequence
          Length = 154681

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 125  ttttattaagaaagaattt 143
            |||||||||||||||||||
Sbjct: 1879 ttttattaagaaagaattt 1897
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>gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome 10, complete sequence
          Length = 148202

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ttttattaagaaagaattt 143
              |||||||||||||||||||
Sbjct: 136793 ttttattaagaaagaattt 136811
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>gb|AC104231.10| Homo sapiens chromosome 15, clone RP11-96H23, complete sequence
          Length = 81256

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    atgcagcaaatgagtggct 49
             |||||||||||||||||||
Sbjct: 39781 atgcagcaaatgagtggct 39799
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>gb|AC026882.6| Homo sapiens chromosome 3 clone RP11-211K13 map 3p, complete sequence
          Length = 162422

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 64910 agcaattttattaagaaag 64928
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>gb|AC122202.4| Mus musculus BAC clone RP23-68P6 from 19, complete sequence
          Length = 234448

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    tttattaagaaagaatttg 144
              |||||||||||||||||||
Sbjct: 113648 tttattaagaaagaatttg 113666
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>emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on chromosome 13 Contains a 60S
              ribosomal protein L12 (RPL12) pseudogene and a pseudogene
              similar to part of ribosomal protein S3A (RPS3A)(FTE1),
              complete sequence
          Length = 176939

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 120    agcaattttattaagaaag 138
              |||||||||||||||||||
Sbjct: 163461 agcaattttattaagaaag 163443
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>emb|AL109829.21|HSJ832E24 Human DNA sequence from clone RP5-832E24 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 106748

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 79796 agcaattttattaagaaag 79778
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>emb|AL022578.1|HS393P12 Human DNA sequence from clone RP3-393P12 on chromosome Xp11.21 Contains
             a C2H2 type zinc finger pseudogene, a WAS protein family
             member 2 (WASF2) pseudogene (LOC286404), a ribosomal
             protein L7 (RPL7) pseudogene and the 5' end of a gene for
             a novel zinc finger protein, complete sequence
          Length = 104597

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 42646 agcaattttattaagaaag 42664
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>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             11/17
          Length = 349284

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 124   attttattaagaaagaatt 142
             |||||||||||||||||||
Sbjct: 92509 attttattaagaaagaatt 92527
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>gb|AC183493.1| Brassica oleracea Contig B, complete sequence
          Length = 284024

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    attttattaagaaagaatt 142
              |||||||||||||||||||
Sbjct: 251874 attttattaagaaagaatt 251856
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>gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, complete sequence
          Length = 163533

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   atgcagcaaatgagtggct 49
            |||||||||||||||||||
Sbjct: 1172 atgcagcaaatgagtggct 1190
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>gb|AC009032.8| Homo sapiens chromosome 16 clone RP11-140H17, complete sequence
          Length = 184511

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ttttattaagaaagaattt 143
              |||||||||||||||||||
Sbjct: 152730 ttttattaagaaagaattt 152748
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 124     attttattaagaaagaatt 142
               |||||||||||||||||||
Sbjct: 9618692 attttattaagaaagaatt 9618710
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>gb|AC093806.2| Homo sapiens BAC clone RP11-327P24 from 2, complete sequence
          Length = 87841

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 123  aattttattaagaaagaat 141
            |||||||||||||||||||
Sbjct: 7042 aattttattaagaaagaat 7060
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>gb|AC025430.5|AC025430 Homo sapiens chromosome 15 clone CTD-2329K10 map 15q15, complete
             sequence
          Length = 87349

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 56176 agcaattttattaagaaag 56194
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>gb|AC079753.7| Homo sapiens BAC clone RP11-67L14 from 2, complete sequence
          Length = 154214

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 120  agcaattttattaagaaag 138
            |||||||||||||||||||
Sbjct: 8300 agcaattttattaagaaag 8282
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>gb|AC025614.12|AC025614 Homo sapiens chromosome 3 clone RP11-69K20, complete sequence
          Length = 172083

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 21981 agcaattttattaagaaag 21963
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>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1015H11
          Length = 156897

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 124   attttattaagaaagaatt 142
             |||||||||||||||||||
Sbjct: 16172 attttattaagaaagaatt 16190
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>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0005L24
          Length = 155365

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 124    attttattaagaaagaatt 142
              |||||||||||||||||||
Sbjct: 148722 attttattaagaaagaatt 148740
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>emb|BX005313.4| Zebrafish DNA sequence from clone CH211-119C24, complete sequence
          Length = 173719

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    agcaattttattaagaaag 138
              |||||||||||||||||||
Sbjct: 155463 agcaattttattaagaaag 155481
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>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft
             Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN
             (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 120   agcaattttattaagaaag 138
             |||||||||||||||||||
Sbjct: 84400 agcaattttattaagaaag 84382
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>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09,
             complete sequence
          Length = 141580

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 124   attttattaagaaagaatt 142
             |||||||||||||||||||
Sbjct: 69535 attttattaagaaagaatt 69553
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>emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chromosome 14, complete
              sequence
          Length = 206957

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     aattatgcagcaaatgagt 45
              |||||||||||||||||||
Sbjct: 185349 aattatgcagcaaatgagt 185367
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>emb|AJ509090.1|HSA509090 Homo sapiens WASF4 gene for Wiskott-Aldrich syndrome protein family
            member 4, exons 1-3
          Length = 9223

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 120  agcaattttattaagaaag 138
            |||||||||||||||||||
Sbjct: 6204 agcaattttattaagaaag 6222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,230,600
Number of Sequences: 3902068
Number of extensions: 1230600
Number of successful extensions: 84271
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84076
Number of HSP's gapped (non-prelim): 195
length of query: 171
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 149
effective length of database: 17,147,199,772
effective search space: 2554932766028
effective search space used: 2554932766028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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