>Y4IH_RHISN (P55491) Hypothetical protein y4iH precursor|
          Length = 239

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 266 LSTEDDAL*ELPWDLADDTDCAETEAVGLSTSLSEVAGRALPLILLM 406
           ++ +D A  +LP +LAD +   E +A+  +  L E +G AL L  LM
Sbjct: 168 MTGKDAAFVQLPGELADQSSAGELKAIKATIDLKERSGDALTLDELM 214

>TRPA_NOCFA (Q5YYN3) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 266

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 495 RAMAAFSATGLDPDSALP--SDDWFIEVAQDSISRISGRARPATSEREV 355
           R +AA    G+   + +P  +DDWFI  A  ++ RI   A  +T ER V
Sbjct: 117 RDLAAAGGAGIITPNLIPEEADDWFIASATHNLDRIFLVAPSSTEERLV 165

>RUMA_XYLFT (Q87BR3) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 443

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 400 QDQREGPTGHLGEGGAQPDGLRLGAVRVVGQVPWKLLECIIF 275
           +DQR+ P    G      D  R GA+ V+ Q+P K+ E I++
Sbjct: 355 RDQRDAPWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVY 396

>RUMA_XYLFA (Q9PAY7) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 443

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 400 QDQREGPTGHLGEGGAQPDGLRLGAVRVVGQVPWKLLECIIF 275
           +DQR+ P    G      D  R GA+ V+ Q+P K+ E I++
Sbjct: 355 RDQRDAPWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVY 396

>PDR5_YEAST (P33302) Suppressor of toxicity of sporidesmin|
          Length = 1511

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 404  MLSCATSMNQSSLGSALSGSNPVAENAAIALSIMCSMTLCTC 529
            + SCA  +   S+G  +   N VAE+AA   S++ +M+L  C
Sbjct: 1329 LFSCAFYVYVGSMGLLVISFNQVAESAANLASLLFTMSLSFC 1370

>IF2_DESVH (Q72ER1) Translation initiation factor IF-2|
          Length = 1079

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = -3

Query: 529 ARAQRHTAHNR*SDGSILRYRIGS**RASERRLVHRSCTGQHQQDQREG----PTGHLGE 362
           A+ +R     R  +  + + R+ S  R     +  +    Q  Q QRE     P G   E
Sbjct: 248 AQQRRRKKKRRQPEAVVPQVRVIS--RPDPAAVAQQQMQQQAAQQQREAGGYRPGGQRPE 305

Query: 361 GGAQPDGLRLGAVRVVGQ 308
           GG +P+G R G  R  GQ
Sbjct: 306 GGYRPEGQREGGYRPEGQ 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,155,569
Number of Sequences: 219361
Number of extensions: 1274693
Number of successful extensions: 3429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3428
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)