ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9m12 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 112 bits (280), Expect = 2e-25 Identities = 53/67 (79%), Positives = 60/67 (89%) Frame = -3 Query: 389 GLGLNKVAGKVFRIGHLGHLNELQLXGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNST 210 GLGLNKVAGKVFRIGHLG++NELQL GCL GVEM+LKD+GYPV +GSGVAAA+ YL + Sbjct: 335 GLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHI 394 Query: 209 PLIPSRI 189 PLIPSRI Sbjct: 395 PLIPSRI 401
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 75.5 bits (184), Expect = 3e-14 Identities = 38/59 (64%), Positives = 43/59 (72%) Frame = -3 Query: 389 GLGLNKVAGKVFRIGHLGHLNELQLXGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNS 213 GLGLNKVAGKVFRIGHLG L+E+ + G L EM LKD G +KLGSG AAA Y S + Sbjct: 330 GLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 388
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 70.9 bits (172), Expect = 7e-13 Identities = 36/56 (64%), Positives = 42/56 (75%) Frame = -3 Query: 389 GLGLNKVAGKVFRIGHLGHLNELQLXGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 222 G GL++VAGKVFRIGH+G LNEL L G + G EM L D G V GSGVAAA++YL Sbjct: 316 GAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYL 371
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Frame = -3 Query: 383 GLNKVAGKVFRIGHLGHLNELQLXGCLGGVEMVLKDIGYP-VKLGSGVAAAAAYLSN 216 G + ++ K+FR+GHLG +++ + C+ +E+VL ++G+ G+GVAAAA SN Sbjct: 327 GQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARVFSN 383
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 45.1 bits (105), Expect = 4e-05 Identities = 24/54 (44%), Positives = 33/54 (61%) Frame = -3 Query: 383 GLNKVAGKVFRIGHLGHLNELQLXGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 222 G +AGK+FRIGH+G E ++ L VE+ LK++G+ VK SGV A L Sbjct: 330 GQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 44.3 bits (103), Expect = 7e-05 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Frame = -3 Query: 383 GLNKVAGKVFRIGHLGHLNELQLXGCLGGVEMVLKDIGYP-VKLGSGVAAAAAYLSNS 213 G + + G++FRIGHLG + + + + +E VL ++GY G+GVAAA+ LS + Sbjct: 327 GQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRVLSTA 384
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 32.3 bits (72), Expect = 0.28 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = +1 Query: 217 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWPILKTLPA--TLLSPSP 390 F R A+ + +G PM+ S S PP P + S P WP + P L P P Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWPTAASPPGGPQHLQPQP 140
>BCLF1_HUMAN (Q9NYF8) Bcl-2-associated transcription factor 1 (Btf)| Length = 920 Score = 31.2 bits (69), Expect = 0.63 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = +1 Query: 214 EFERYAAAAATPLPSFTGY------PMSLSTISTPPRQPXSCSSLRWPRWPILKTLPATL 375 EF + +A + P + Y P S S I+TPP Q SCS P+L T+ + Sbjct: 201 EFNKSSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDA-----PMLSTVHSAK 255 Query: 376 LSPS 387 +PS Sbjct: 256 NTPS 259
>VL2_HPV44 (Q80918) Minor capsid protein L2| Length = 460 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +1 Query: 241 ATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWPILKTLPATL-LSPSP 390 A P P T P+SLS ++ P Q S S+ W + +LPA + + P P Sbjct: 353 AEPDPDVTEEPVSLSFSTSTPFQRSSVSATPWGNTTVPLSLPADMFVQPGP 403
>VL2_HPV55 (Q80939) Minor capsid protein L2| Length = 460 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +1 Query: 241 ATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWPILKTLPATL-LSPSP 390 A P P FT P+ LS ++ P Q S S+ W + +LP + + P P Sbjct: 353 AEPDPDFTEEPVPLSFSTSTPFQRSSVSATPWGNTTVPLSLPGDMFVQPGP 403
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -2 Query: 306 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 139 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = +1 Query: 193 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWPILKTLPAT 372 L G + ER A LP+ T Y + T P QP +W RW ++ LP Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRVM-ILPIL 142 Query: 373 LL 378 L+ Sbjct: 143 LI 144
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/66 (28%), Positives = 30/66 (45%) Frame = +1 Query: 187 QILEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWPILKTLP 366 Q+ + ++ Y + A P G P+S +++ TPPR P S+ P +L P Sbjct: 119 QLGSQLSAMQINSYGSGMAPPSQGPPG-PLSATSLQTPPRPPQ--PSILQPGSQVLPPPP 175 Query: 367 ATLLSP 384 TL P Sbjct: 176 TTLNGP 181
>F100A_MOUSE (Q6P3B2) Protein FAM100A| Length = 176 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +1 Query: 271 PMSLSTISTPPRQPXSCSSLRWPRWPILKTLP 366 PM+ S S PP P + S P WP + P Sbjct: 99 PMATSATSPPPHFPHATGSFATPSWPTAASPP 130
>GATA_MYCTU (O53258) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 494 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +1 Query: 235 AAATPLPS-FTGYPMSLSTISTPPRQPXSCSSLRWPRW--PILKTLPATL 375 AA PLPS G P++L + T P +C S W P TL A L Sbjct: 64 AAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRSPYDATLTARL 113
>GATA_MYCBO (Q7TXG2) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 494 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +1 Query: 235 AAATPLPS-FTGYPMSLSTISTPPRQPXSCSSLRWPRW--PILKTLPATL 375 AA PLPS G P++L + T P +C S W P TL A L Sbjct: 64 AAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRSPYDATLTARL 113
>PPOB_LYCES (Q08304) Polyphenol oxidase B, chloroplast precursor (EC 1.10.3.1)| (PPO) (Catechol oxidase) Length = 596 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 193 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPXSC 321 L G+ GV AA+ATP+PS +TIS P P SC Sbjct: 71 LGGLYGVANAIPLAASATPIPSPDLKTCGRATISDGPLVPYSC 113
>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)| Length = 320 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 221 RGTPPRPPRRCQASPGT 271 R PP PRRC+A+P T Sbjct: 147 RAVPPAAPRRCEAAPAT 163
>FA24B_HUMAN (Q8N5W8) Protein FAM24B precursor| Length = 94 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/38 (31%), Positives = 16/38 (42%) Frame = +2 Query: 68 NTTPALLCSAVCPAADPSRAHCTCLFFSSRPPCFCAWN 181 N+ + + CPA + C F S PPC C N Sbjct: 54 NSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDIN 91
>RGAP1_HUMAN (Q9H0H5) Rac GTPase-activating protein 1 (MgcRacGAP)| Length = 632 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/27 (48%), Positives = 20/27 (74%) Frame = -3 Query: 275 IGYPVKLGSGVAAAAAYLSNSTPLIPS 195 IG PVK+G G+ A ++S ++P+IPS Sbjct: 340 IGTPVKIGEGM--LADFVSQTSPMIPS 364
>SYNG_RAT (Q9JKC9) AP1 gamma subunit-binding protein 1 (Gamma-synergin)| (Fragment) Length = 700 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 241 ATPLPSFTGYPMSLSTISTPPRQPXSCSS 327 A P+P+ +G+PM T+ TP QP + +S Sbjct: 301 AAPIPTLSGFPM---TLPTPVSQPTAMTS 326
>CT160_HUMAN (Q9NUG4) Protein C20orf160| Length = 571 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -2 Query: 297 GGDGAQGHRVPGEAWQRR----GGRGGVPLEFHAPHPL 196 GG G G PG +W+RR GG G P+PL Sbjct: 253 GGGGGGGAGKPGGSWERRQAGSGGGGSWERRHPGPNPL 290
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 303 RRGGDGAQGHRVPGEAWQRRGGRGGVP 223 ++GG G G + PG QR GGR G P Sbjct: 190 QQGGQGRPGGQRPGAPAQRPGGRPGGP 216
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = -2 Query: 312 GLPRRGGDGAQGHRV-PGEAWQRRGGRGGVP 223 G PR GG+ QG + P E R GGRGG P Sbjct: 204 GGPRPGGNRPQGGQGGPAERAPRPGGRGGQP 234
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 21/57 (36%) Frame = +3 Query: 132 VRVCSSPRDPLAFVRGICSDSXXXXXXXXXXXXXXXXHAAAKLHRVPDVLEHHLHPA 302 +R S DPL+ VR IC +L R+ D L HH PA Sbjct: 586 LRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQPA 642
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 21/57 (36%) Frame = +3 Query: 132 VRVCSSPRDPLAFVRGICSDSXXXXXXXXXXXXXXXXHAAAKLHRVPDVLEHHLHPA 302 +R S DPL+ VR IC +L R+ D L HH PA Sbjct: 586 LRAWESRSDPLSRVRDICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQPA 642
>CWC25_ASHGO (Q75AR4) Pre-mRNA-splicing factor CWC25| Length = 138 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = -2 Query: 291 DGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNKH 136 D +G P E RGG+ G P+E A P +K A+ +GG H Sbjct: 89 DAPEGTCSPDETAAARGGQQGAPVEVSAKSP----AKAVAEARGGPGSSGVH 136
>BCLF1_MOUSE (Q8K019) Bcl-2-associated transcription factor 1 (Btf)| Length = 919 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 271 PMSLSTISTPPRQPXSCSSLRWPRWPILKTLPATLLSPS 387 P S S I+TPP Q SCS P+L T+ + +PS Sbjct: 225 PHSPSPIATPPSQSSSCSDA-----PMLSTVHSAKNTPS 258
>ATG18_CRYNE (Q5KGQ2) Autophagy-related protein 18| Length = 423 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 220 ERYAAAAATPLPSFTGYPMSLSTISTPPRQPXS 318 ER A +P+PS + P+S S I PP P + Sbjct: 149 ERSYLAYPSPVPSASSTPLSSSAIPAPPPAPTT 181
>PGLR1_ASPAC (O74213) Polygalacturonase 1 precursor (EC 3.2.1.15) (PG-1)| (Pectinase 1) Length = 378 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Frame = -2 Query: 288 GAQGHRVPGEA---WQRRGGRGG-VPLEFHAPHPLQN 190 GA GH + G+ W GG GG +F A H L N Sbjct: 117 GASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTN 153
>NOV_HUMAN (P48745) Protein NOV homolog precursor (NovH) (Nephroblastoma| overexpressed gene protein homolog) Length = 357 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/45 (40%), Positives = 20/45 (44%) Frame = +2 Query: 146 FSSRPPCFCAWNLLRFWRG*GAWNSRGTPPRPPRRCQASPGTRCP 280 F R C C LL G A R PP+ P RC A+P T P Sbjct: 9 FCLRKQCLCLTFLLLHLLGQVAATQR-CPPQCPGRCPATPPTCAP 52
>NRG3_HUMAN (P56975) Pro-neuregulin-3, membrane-bound isoform precursor| (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)] Length = 720 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +1 Query: 223 RYAAAAATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWP 348 R AA AT +PS T S ST+ + P P + S+ P WP Sbjct: 185 RNTAAPAT-VPSTTAPFFSSSTLGSRPPVPGTPSTQAMPSWP 225
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +1 Query: 226 YAAAAATPLPSFTGYPMSLSTISTPPRQPXSCSSLRWPRWPILKTLPATLLSP 384 Y AA AT Y +SLS ++ P P S + P+L++ P+T L P Sbjct: 90 YGAARATQ----DIYSLSLSARNSQPHSPTSSLTAGASSLPLLQSPPSTRLPP 138
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = +1 Query: 193 LEGMRGVEFERYAAAAATPLPSFTGYPMS----LSTISTPPRQPXSCSSLRWPRWPILKT 360 LEG+RG++F+ ++P P P S S + PPR S P P T Sbjct: 754 LEGLRGLDFDPLTFRCSSPTPGDPAPPASPAPPASASAFPPRATPQALSPHGPTKPASPT 813
>TAF6_XENLA (Q91857) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-60) (TAFII60) Length = 618 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Frame = +1 Query: 184 AQILEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPXSC---SSLRWPRWPIL 354 A+ ++G + R P P+ T + +++ PR P SSL P ++ Sbjct: 459 ARAQSALQGPQVNRTTLTVTQPRPTLT-LSQASGSLTPSPRTPSIIKVPSSLTLPVQTLM 517 Query: 355 KTLPATLLSPSP 390 PAT PSP Sbjct: 518 SARPATPTQPSP 529
>VP48_NPVAC (Q00732) p48 protein (p45 protein)| Length = 387 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +2 Query: 50 YIQREYNTTP-----ALLCSAVCPAADPSRAHCTCLFFSS 154 Y+Q+ YN TP A++C + PA C C + +S Sbjct: 109 YLQKYYNPTPAPDVDAIMCQSCKPANKIQCFECKCKYLAS 148
>XKR5_PANTR (Q49LS3) XK-related protein 5| Length = 686 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 312 GLPRRGGDGAQGHRVPGEAWQRRGGRG 232 G P+ G D G + G Q+RGG G Sbjct: 510 GTPKEGADAVSGTQGKGTGGQQRGGEG 536
>XKR5_HUMAN (Q6UX68) XK-related protein 5| Length = 686 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 312 GLPRRGGDGAQGHRVPGEAWQRRGGRG 232 G P+ G D G + G Q+RGG G Sbjct: 510 GTPKEGADAVSGTQGKGTGGQQRGGEG 536
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Frame = +1 Query: 193 LEGMRGVEFERYAAAAATPLPSFTGYPMS----LSTISTPPRQPXSCSSLRWPRWPILKT 360 LEG+RG++F+ ++P P P S + PPR S PR P Sbjct: 732 LEGLRGLDFDPLTFRCSSPTPGDPAPPASPAPPAPASAFPPRVTPQAIS---PRGPTSPA 788 Query: 361 LPATL 375 PA L Sbjct: 789 SPAAL 793
>MMP25_HUMAN (Q9NPA2) Matrix metalloproteinase-25 precursor (EC 3.4.24.-)| (MMP-25) (Membrane-type matrix metalloproteinase 6) (MT-MMP 6) (Membrane-type-6 matrix metalloproteinase) (MT6-MMP) (Leukolysin) Length = 562 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +1 Query: 202 MRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQP 312 +RG ++ RY AAA P P GYP LS P P Sbjct: 431 VRGRQYWRYDEAAARPDP---GYPRDLSLWEGAPPSP 464
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Frame = -2 Query: 312 GLPRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQ-------NLSKFHAQKQGGR 154 G PRRGG ++G G + RG GG+P + +L Q QG Sbjct: 277 GTPRRGGQSSRG----GRGGRGRGRGGGLPFVIKFVSRAKKVKMGQLSLGLESGQGQGQH 332 Query: 153 EEKNKHVQCALLGSAAG 103 EE + V +GS G Sbjct: 333 EESWQDVPQRRVGSGQG 349
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +2 Query: 212 WNSRGTPPRPPRR-CQASPGT 271 W S PPR PR+ C+ +PGT Sbjct: 1577 WQSTPQPPRGPRKTCRGAPGT 1597
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +1 Query: 229 AAAAATPLPSFTGYPMSLSTISTPPRQPXS 318 A AAA P P T P S T STP P + Sbjct: 13 ATAAAAPAPVVTAAPASAPTPSTPAPTPAA 42
>SYNG_MOUSE (Q5SV85) AP1 gamma subunit-binding protein 1 (Gamma-synergin)| Length = 1306 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 241 ATPLPSFTGYPMSLSTISTPPRQPXSCSS 327 A P+P+ +G+PM T+ TP QP + S Sbjct: 380 AAPIPTLSGFPM---TLPTPVSQPTAMPS 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,007,488 Number of Sequences: 219361 Number of extensions: 1123304 Number of successful extensions: 4293 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 4069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4282 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
