Clone Name	bags14n14
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	115	1e-25
2	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	114	1e-25
3	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	114	2e-25
4	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	109	6e-24
5	YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12	83	6e-16
6	YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4	82	1e-15
7	SGN1_YEAST (P40561) RNA-binding protein SGN1	82	1e-15
8	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	67	4e-11
9	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	62	1e-09
10	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	62	1e-09
11	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	59	7e-09
12	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	59	1e-08
13	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	58	2e-08
14	NOP12_ASHGO (Q75BJ7) Nucleolar protein 12	58	2e-08
15	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	57	3e-08
16	NOP12_YEAST (Q08208) Nucleolar protein 12	56	6e-08
17	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	56	8e-08
18	SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ...	54	3e-07
19	SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ...	54	4e-07
20	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	54	4e-07
21	SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ...	53	5e-07
22	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	53	5e-07
23	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	53	7e-07
24	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	52	9e-07
25	RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin...	52	1e-06
26	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	52	1e-06
27	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	52	1e-06
28	NOP12_SCHPO (O13741) Nucleolar protein 12	51	2e-06
29	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	50	6e-06
30	DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4	50	6e-06
31	NUCL_XENLA (P20397) Nucleolin (Protein C23)	50	6e-06
32	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	50	6e-06
33	DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1	50	6e-06
34	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	50	6e-06
35	DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2	50	6e-06
36	DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3	50	6e-06
37	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	50	6e-06
38	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	49	7e-06
39	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	49	7e-06
40	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	49	7e-06
41	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	49	7e-06
42	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	49	9e-06
43	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	49	9e-06
44	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	49	9e-06
45	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	49	1e-05
46	NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2	49	1e-05
47	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	49	1e-05
48	ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (...	48	2e-05
49	GAR2_SCHPO (P41891) Protein gar2	48	2e-05
50	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	48	2e-05
51	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	48	2e-05
52	ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ...	47	3e-05
53	NUCL_CHICK (P15771) Nucleolin (Protein C23)	47	3e-05
54	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	47	3e-05
55	NUCL_PONPY (Q5RF26) Nucleolin	47	5e-05
56	NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2	46	6e-05
57	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	46	8e-05
58	NUCL_MACFA (Q4R4J7) Nucleolin	46	8e-05
59	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	45	1e-04
60	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	45	1e-04
61	YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i...	45	2e-04
62	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	45	2e-04
63	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	45	2e-04
64	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	45	2e-04
65	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	44	2e-04
66	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	44	2e-04
67	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	44	3e-04
68	BOLL_MACFA (Q8WP23) Protein boule-like	44	3e-04
69	BOLL_HUMAN (Q8N9W6) Protein boule-like	44	3e-04
70	RNP4F_DROME (Q9W4D2) RNA-binding protein 4F	44	3e-04
71	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	44	3e-04
72	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	44	3e-04
73	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	44	3e-04
74	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	44	4e-04
75	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	44	4e-04
76	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	44	4e-04
77	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	44	4e-04
78	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	44	4e-04
79	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	44	4e-04
80	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	43	5e-04
81	BOLL_MOUSE (Q924M5) Protein boule-like	43	5e-04
82	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	43	5e-04
83	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	43	5e-04
84	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	43	5e-04
85	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	43	5e-04
86	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	43	5e-04
87	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	43	5e-04
88	DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei...	43	5e-04
89	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	43	7e-04
90	SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)	43	7e-04
91	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	43	7e-04
92	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	43	7e-04
93	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	43	7e-04
94	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	42	9e-04
95	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	42	9e-04
96	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	42	9e-04
97	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	42	9e-04
98	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	42	0.001
99	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	42	0.001
100	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	42	0.001
101	SXL_MUSDO (O17310) Sex-lethal homolog	42	0.002
102	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	42	0.002
103	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	42	0.002
104	SXL_CHRRU (O97018) Sex-lethal homolog	42	0.002
105	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	42	0.002
106	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	42	0.002
107	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
108	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
109	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
110	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
111	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
112	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
113	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	41	0.002
114	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	41	0.002
115	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	41	0.003
116	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	41	0.003
117	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	41	0.003
118	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	41	0.003
119	HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (...	40	0.003
120	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	40	0.003
121	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	40	0.003
122	DAZ1_CAEEL (Q20870) DAZ protein 1	40	0.003
123	SXL_MEGSC (O01671) Sex-lethal homolog	40	0.003
124	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	40	0.003
125	RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U...	40	0.003
126	HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn...	40	0.004
127	FCA_ARATH (O04425) Flowering time control protein FCA	40	0.004
128	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	40	0.004
129	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	40	0.004
130	HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (...	40	0.004
131	BOULE_DROME (Q24207) Protein boule	40	0.004
132	PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin...	40	0.004
133	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	40	0.004
134	NOP12_CANAL (Q5AHI7) Nucleolar protein 12	40	0.004
135	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	40	0.006
136	NUCL_MESAU (P08199) Nucleolin (Protein C23)	40	0.006
137	NUCL_RAT (P13383) Nucleolin (Protein C23)	40	0.006
138	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	40	0.006
139	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	40	0.006
140	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	40	0.006
141	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	40	0.006
142	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	40	0.006
143	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	39	0.007
144	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	39	0.007
145	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	39	0.007
146	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	39	0.007
147	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	39	0.007
148	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	39	0.007
149	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	39	0.007
150	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	39	0.010
151	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	39	0.010
152	HSH49_YEAST (Q99181) Protein HSH49	39	0.010
153	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	39	0.010
154	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	39	0.010
155	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	39	0.010
156	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	39	0.010
157	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	39	0.010
158	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	39	0.010
159	TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein	39	0.013
160	SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)	39	0.013
161	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	39	0.013
162	MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos...	39	0.013
163	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	39	0.013
164	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	39	0.013
165	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	39	0.013
166	YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ...	38	0.017
167	MODU_DROME (P13469) DNA-binding protein modulo	38	0.017
168	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	38	0.017
169	SXL_DROSU (Q24668) Protein sex-lethal	38	0.017
170	SXL_DROME (P19339) Protein sex-lethal	38	0.017
171	IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN...	38	0.022
172	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	38	0.022
173	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	38	0.022
174	FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protei...	37	0.028
175	FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protei...	37	0.028
176	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	37	0.028
177	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	37	0.028
178	RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p...	37	0.028
179	NOP12_DEBHA (Q6BTS9) Nucleolar protein 12	37	0.028
180	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	37	0.028
181	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	37	0.037
182	MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos...	37	0.037
183	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	37	0.037
184	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	37	0.037
185	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	37	0.037
186	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	37	0.037
187	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	37	0.037
188	RSD1_SCHPO (O13845) RNA-binding protein rsd1	37	0.037
189	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	37	0.037
190	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	37	0.037
191	RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi...	37	0.037
192	RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi...	37	0.037
193	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	37	0.037
194	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	37	0.037
195	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	37	0.037
196	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	37	0.037
197	SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (S...	37	0.049
198	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	37	0.049
199	U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 aux...	37	0.049
200	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	37	0.049
201	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	37	0.049
202	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	37	0.049
203	U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux...	36	0.063
204	U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux...	36	0.063
205	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	36	0.063
206	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	36	0.083
207	HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (...	36	0.083
208	HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (...	36	0.083
209	SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Ser...	36	0.083
210	SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (S...	36	0.083
211	GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)	36	0.083
212	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	36	0.083
213	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	36	0.083
214	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	36	0.083
215	GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)	36	0.083
216	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	36	0.083
217	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	36	0.083
218	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	35	0.11
219	U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux...	35	0.11
220	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	35	0.11
221	G3BP_SCHPO (O94260) Putative G3BP-like protein	35	0.11
222	RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri...	35	0.11
223	HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' ...	35	0.11
224	PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6...	35	0.14
225	IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H ...	35	0.14
226	IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H ...	35	0.14
227	HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' ...	35	0.14
228	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	35	0.14
229	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	34	0.24
230	RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin...	34	0.24
231	THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1...	34	0.31
232	THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and expor...	34	0.31
233	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	34	0.31
234	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	34	0.31
235	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	33	0.41
236	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	33	0.41
237	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	33	0.41
238	MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos...	33	0.41
239	YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c...	33	0.41
240	RBP1_DROME (Q02427) RNA-binding protein 1	33	0.54
241	PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5....	33	0.54
242	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	33	0.70
243	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	33	0.70
244	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	33	0.70
245	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	33	0.70
246	SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7	33	0.70
247	SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp...	33	0.70
248	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	32	0.92
249	REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2	32	0.92
250	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	32	1.2
251	CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associate...	32	1.2
252	MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos...	32	1.6
253	RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-bindin...	31	2.0
254	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	31	2.0
255	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	31	2.0
256	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	31	2.0
257	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	31	2.0
258	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	31	2.0
259	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	31	2.0
260	SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pr...	31	2.0
261	SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pr...	31	2.0
262	NOP12_GIBZE (Q4IQW0) Nucleolar protein 12	31	2.0
263	RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p...	31	2.7
264	RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p...	31	2.7
265	SPEN_DROME (Q8SX83) Protein split ends	30	3.5
266	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	30	3.5
267	NOP12_EMENI (Q5BDC8) Nucleolar protein 12	30	4.5
268	ZG14_MOUSE (Q9D1C9) Gastric cancer antigen Zg14 homolog	29	7.8
269	ZG14_HUMAN (Q9Y3A4) Gastric cancer antigen Zg14	29	7.8
270	GAGJ_DROFU (P21331) Nucleic-acid-binding protein from mobile ele...	29	7.8
271	PLSB_RAT (P97564) Glycerol-3-phosphate acyltransferase, mitochon...	29	7.8
272	PLSB_HUMAN (Q9HCL2) Glycerol-3-phosphate acyltransferase, mitoch...	29	7.8
273	PLSB_MOUSE (Q61586) Glycerol-3-phosphate acyltransferase, mitoch...	29	7.8

---

>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score =  115 bits (287), Expect = 1e-25
 Identities = 75/188 (39%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
 Frame = +3

Query: 9   PNRPRVRLGRGE*IGLGAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDX 188
           P RPR   G     G G    A    EE E  G         +  G  GD A +  EL+ 
Sbjct: 73  PPRPRAPPGAP---GPGPGSGAPGNQEEEEESG---------LVEGDPGDGAIEDPELEA 120

Query: 189 XXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAKEEMDSRSVFVGNVDY 350
                             Q +V K+M    P           E K E D+RS++VGNVDY
Sbjct: 121 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 180

Query: 351 ACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQ 527
             T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+++ ++ L ES   GRQ
Sbjct: 181 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 240

Query: 528 IKVAPKRT 551
           IKV PKRT
Sbjct: 241 IKVIPKRT 248

---

>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score =  114 bits (286), Expect = 1e-25
 Identities = 75/188 (39%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
 Frame = +3

Query: 9   PNRPRVRLGRGE*IGLGAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDX 188
           P RPR   G     G G    A    EE E  G         +  G  GD A +  EL+ 
Sbjct: 73  PPRPRAPPGAP---GPGPGSGAPGSQEEEEEPG---------LVEGDPGDGAIEDPELEA 120

Query: 189 XXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAKEEMDSRSVFVGNVDY 350
                             Q +V K+M    P           E K E D+RS++VGNVDY
Sbjct: 121 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 180

Query: 351 ACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQ 527
             T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+++ ++ L ES   GRQ
Sbjct: 181 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 240

Query: 528 IKVAPKRT 551
           IKV PKRT
Sbjct: 241 IKVIPKRT 248

---

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score =  114 bits (285), Expect = 2e-25
 Identities = 76/188 (40%), Positives = 96/188 (51%), Gaps = 7/188 (3%)
 Frame = +3

Query: 9   PNRPRVRLGRGE*IGLGAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDX 188
           P RPR   G     G G    A    EE E  G    V+A+       GD A +  EL+ 
Sbjct: 69  PPRPRAPPGAP---GPGPGSGAPGSQEEEEEPGL---VEADP------GDGAIEDPELEA 116

Query: 189 XXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAKEEMDSRSVFVGNVDY 350
                             Q +V K+M    P           E K E D+RS++VGNVDY
Sbjct: 117 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDY 176

Query: 351 ACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQ 527
             T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+++ ++ L ES   GRQ
Sbjct: 177 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 236

Query: 528 IKVAPKRT 551
           IKV PKRT
Sbjct: 237 IKVIPKRT 244

---

>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score =  109 bits (272), Expect = 6e-24
 Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 479
           KE +D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   
Sbjct: 49  KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108

Query: 480 IQEAVKLSESELHGRQIKVAPKRT 551
           +  A+ L+ S LH R +KV PKRT
Sbjct: 109 VPNALLLNGSMLHERPLKVTPKRT 132

---

>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12|
          Length = 197

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           Q K+AK ++       T E ++ +D++SVF+GNVD+  T EEV++HF  CG + R TI  
Sbjct: 35  QNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPK 94

Query: 423 DKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRT 551
           DKF  + K FAY+EF ++ +I+ A+ ++ S    R I V  KRT
Sbjct: 95  DKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 138

---

>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4|
          Length = 237

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           Q K+AK ++       T E ++ +D++SVF+GNVD+  T EE+++HF  CG + + TI  
Sbjct: 75  QNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPK 134

Query: 423 DKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRT 551
           DKF  + K FAY+EF ++ +I+ A+ ++ S    R I V  KRT
Sbjct: 135 DKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 178

---

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
 Frame = +3

Query: 273 GDPNATTSEAKEEM-------DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 428
           G P  +   +KEE        DSRS+FVGN+    TPE+++ HF  CG + R+T+L D+ 
Sbjct: 41  GTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRN 100

Query: 429 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRT 551
            G PKG+ Y+EF      ++A++L+  EL G++I V+ KRT
Sbjct: 101 TGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRT 141

---

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 491
           D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   +++  A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344

Query: 492 VKLSESELHGRQIKV 536
           +KL+ SEL GR+++V
Sbjct: 345 LKLNNSELMGRKLRV 359

---

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 491
           D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   +A+  A
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342

Query: 492 VKLSESELHGRQIKV 536
           +KL+ SEL GR+++V
Sbjct: 343 LKLNNSELMGRKLRV 357

---

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 491
           D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   +A+  A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348

Query: 492 VKLSESELHGRQIKV 536
           +KL+ SEL GR+++V
Sbjct: 349 LKLNNSELMGRKLRV 363

---

>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 497
           RSVFVGN+D+    E + +HF  CG +  V I+ D K    KGFAYV+F + +++ +A+ 
Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418

Query: 498 LSESELH 518
           L E ++H
Sbjct: 419 LHEKKIH 425

---

>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 26/73 (35%), Positives = 46/73 (63%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E++ +F   GTV  V I+TD+ G  KG+ +V F++   +Q+ V+ S
Sbjct: 37  TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95

Query: 504 ESELHGRQIKVAP 542
           +  +HG+++K+ P
Sbjct: 96  QISVHGKRLKLGP 108

---

>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 497
           RSVFVGN+D+    E + +HF +CG++  V I+ D K    KGFAYV+F E +++ +A+ 
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287

Query: 498 LSESEL 515
           L+E  +
Sbjct: 288 LNEKPM 293

---

>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12|
          Length = 426

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 497
           RSVFVGN+D+  + E + +HF SCG +  V I+ D K    KGFAYV+F +  ++ +A+ 
Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318

Query: 498 LSESEL---HGRQIKV 536
           L++ ++    GR+++V
Sbjct: 319 LNDKKMAVGKGRKLRV 334

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V NV+ A T EE+++HF+ CGT+    ++ D+ G+ KGF +V F   E   +AVK  
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364

Query: 504 ESEL-HGRQIKVA 539
             ++ HG+ + VA
Sbjct: 365 HGQMFHGKPLYVA 377



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/80 (22%), Positives = 37/80 (46%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ 437
           KE+  G     T   K E    ++++ N+D   + + +++ F   G +  + I  D+   
Sbjct: 180 KEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL 239

Query: 438 PKGFAYVEFVEAEAIQEAVK 497
            +G+A+V F   E  + A +
Sbjct: 240 CRGYAFVNFDNPEDARRAAE 259

---

>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 497
           RS+FVGN+D+    E + +HF  CG +  V I+ D K    KGFAYV+F + +++ +A+ 
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338

Query: 498 LSESELHGRQ 527
           L+E  +  ++
Sbjct: 339 LNEKPMKSQK 348

---

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
 Frame = +3

Query: 252 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 419
           V++E      +ATTS+     + ++   +VFVG +D      E++  F   G+V  V I+
Sbjct: 13  VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72

Query: 420 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
           TD+ G  KG+ +V F     +Q+ V+ S+   HG+++K+ P
Sbjct: 73  TDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 112

---

>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3)
          Length = 981

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = +3

Query: 276  DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
            +P+         ++   +F+  + ++CT EE+++   + GTV  + ++T++ G+PKG AY
Sbjct: 804  NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 863

Query: 456  VEFV-EAEAIQEAVKLSESELHGRQIKVA 539
            VE+  E++A Q  +K+    +    IKVA
Sbjct: 864  VEYENESQASQAVMKMDGMTIKENVIKVA 892



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 488
           DS +VFV N+ Y+    + +    F +CG V ++  +    G  +G+ YVEF E ++  +
Sbjct: 720 DSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQ 779

Query: 489 AVKLSESELHGRQIKVAP 542
           A+++    + GR + V+P
Sbjct: 780 ALEMDRKSVEGRPMFVSP 797

---

>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
            (Tip110)
          Length = 963

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = +3

Query: 276  DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
            +P+         ++   +F+  + ++CT EE+++   + GTV  + ++T++ G+PKG AY
Sbjct: 786  NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 845

Query: 456  VEFV-EAEAIQEAVKLSESELHGRQIKVA 539
            VE+  E++A Q  +K+    +    IKVA
Sbjct: 846  VEYENESQASQAVMKMDGMTIKENIIKVA 874



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 488
           DS +VFV N+ Y+    + +    F +CG V ++  +    G  +G+ YVEF E ++  +
Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 761

Query: 489 AVKLSESELHGRQIKVAP 542
           A+++    + GR + V+P
Sbjct: 762 ALEMDRKSVEGRPMFVSP 779

---

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
 Frame = +3

Query: 252 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 419
           +++E      +A TS+     + ++   +VFVG +D      E++  F   G+V  V I+
Sbjct: 13  ISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72

Query: 420 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
           TD+ G  KG+ +V F     +Q+ V+ S+   HG+++K+ P
Sbjct: 73  TDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGP 112

---

>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +3

Query: 312  MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQE 488
            ++   +F+  + ++CT EE++    + GTV  + ++T++ G+PKG AYVE+  E++A Q 
Sbjct: 798  LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857

Query: 489  AVKLSESELHGRQIKVA 539
             +K+    +    IKVA
Sbjct: 858  VMKMDGMTIRENVIKVA 874



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 6/168 (3%)
 Frame = +3

Query: 57   GAQHAAAMEDEEHEVYGQEI---PVDAEDVEMG-AGGDDAAKLHELDXXXXXXXXXXXXX 224
            GA      EDEE+E +G+E    P      E   A G+ +A   E +             
Sbjct: 620  GADKRREDEDEENE-WGEEEEEQPSKRRRTENSLASGEASAMKEETELSGKCLTIDVGPP 678

Query: 225  XXXXXXQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQH--FNSCGT 398
                   A + ++M    P      +K   DS +VFV N+ Y+    EV+    F  CG 
Sbjct: 679  SKQKEKAASLKRDM----PKVAHDSSK---DSVTVFVSNLPYSIEEPEVKLRPLFEVCGE 731

Query: 399  VNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
            V ++  +    G  +G+ YVEF E ++ Q+A++L    + GR + V+P
Sbjct: 732  VVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSP 779

---

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
 Frame = +3

Query: 246 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 425
           A  A    G   N + +  + + D R +FVG + +  T +E++ HF   G +  + + TD
Sbjct: 32  AGAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90

Query: 426 -KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 548
            + G+ +GFA++ F   EAI +     E  ++ +  KV PK+
Sbjct: 91  PQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK--KVDPKK 130



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 503
           +FVG +    + EE++ +F   G +  V +  DK   Q KGF ++ F   + + + +K  
Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTP 197

Query: 504 ESELHGRQIKV 536
           + ++ G+++ V
Sbjct: 198 KQKIAGKEVDV 208

---

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
 Frame = +3

Query: 252 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 419
           +++E      +A TS+     + ++   +VFVG +D      E++  F   G+V  V I+
Sbjct: 13  ISREANTQSSSAATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKII 72

Query: 420 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
           TD+ G  KG+ +V F     +Q+ V+ S+   HG+++K+ P
Sbjct: 73  TDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGP 112

---

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E++  F   G+V  V I+TD+ G  KG+ +V F     +Q+ V+ S
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE-S 99

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 100 QINFHGKKLKLGP 112

---

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +3

Query: 300 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 479
           A+EE D R+VFVGN++     E + + F   G + +VTI  D+ G+PK F +V F   E+
Sbjct: 4   AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62

Query: 480 IQEAVKLSES-ELHGRQIKV 536
           +  A+ L     L+GR I V
Sbjct: 63  VSYAIALLNGIRLYGRPINV 82

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 482
           E   S  +FVG + + C   E++++FN  G V  V ++ D   Q P+GF ++ F + +++
Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168

Query: 483 QEAVKLSESELHGRQIKV 536
            +AV +   ++ G++++V
Sbjct: 169 DQAVNMHFHDIMGKKVEV 186

---

>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = +3

Query: 249 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 428
           K A++++  DPN   +   +    +++FV  ++Y  +  ++++ F S G + RV ++TD+
Sbjct: 116 KAAEDLKKYDPNNDPNATGDPY--KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173

Query: 429 F-GQPKGFAYVEFVEAEAIQEAVKLSESE-LHGRQIKVAPKR 548
              +PKG+A++E++    ++ A K ++ + + GR++ V  +R
Sbjct: 174 LTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVER 215

---

>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 497
           R VFVGN+ +    E + ++F  CG+++ V I+ D K    KGFAY++F +   + +A+ 
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329

Query: 498 LSESEL-HGRQIKV 536
           L+E ++  GR +++
Sbjct: 330 LNEKKMPEGRTLRI 343

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           RSVFVGN+ Y  T E+++  F+  G+V    ++ D+  G+PKG+ + E+ + E    A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 498 -LSESELHGRQIKV 536
            L+  E  GR ++V
Sbjct: 76  NLNGREFSGRALRV 89

---

>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 265 QIHFHGKKLKLGP 277



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112

---

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 26/97 (26%), Positives = 50/97 (51%)
 Frame = +3

Query: 246 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 425
           AK  KEM    P A  ++     +  S+F+GN++     +E++       +   +TI   
Sbjct: 207 AKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDI 266

Query: 426 KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
           + G  K F YV+F   E +++A+KL+  ++ G ++K+
Sbjct: 267 RIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKI 303



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
 Frame = +3

Query: 108 QEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQG----- 272
           QEI  +A+D+ +  G D + K                        + K   E++G     
Sbjct: 341 QEIFENAKDIRIPTGKDGSNK-------GIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 393

Query: 273 ---GDPNATTSEAK-EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
              G+ +  +   K  E DS+ + V N+ Y+ T + +++ F    ++     +    G+ 
Sbjct: 394 DFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRA 449

Query: 441 KGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 536
           KGFA++EF  AE  ++A+   + +E+ GR I++
Sbjct: 450 KGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 482



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +3

Query: 267 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 446
           QGG P         +  S+++FV  +    T E +++ F+  G+VN   +     G  KG
Sbjct: 486 QGGGPQGGGRGGSAQ--SKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKG 541

Query: 447 FAYVEFVEAEAIQEAVK-LSESELHGRQI 530
           F +V+F  AE  + A + + + E+ G ++
Sbjct: 542 FGFVDFSTAEDAKAAKEAMEDGEIDGNKV 570

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +3

Query: 285 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVE 461
           A+   +K+E  S  +FVGN+D+  T  ++++HF   G + RV ++T +  G+ KGF +V+
Sbjct: 217 ASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275

Query: 462 FVEAEAIQEAVKLSES 509
           F + +   +A++L  +
Sbjct: 276 FPDIDTCMKAMELGHN 291



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +3

Query: 423 DKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
           +K  Q KGFAYV+F   +A++ A++ SE  L+GR I +
Sbjct: 159 EKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILI 196

---

>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 429

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 430 QIHFHGKKLKLGP 442



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 265 QIHFHGKKLKLGP 277



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112

---

>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 500
           R++FVGN++   T E + + F+  G V +V I  DK G+PK FA+V F    ++  A+ L
Sbjct: 10  RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69

Query: 501 SES-ELHGRQIKV 536
               +L+GR IK+
Sbjct: 70  LNGIKLYGRPIKI 82

---

>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112

---

>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 504 ESELHGRQIKVAP 542
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           RSVFVGN+ Y  T E+++  F+  G+V    ++ D+  G+PKG+ + E+ + E    A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 498 -LSESELHGRQIKV 536
            L+  E  GR ++V
Sbjct: 76  NLNGREFSGRALRV 89

---

>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 494
           R VFVG +D+    E + + F+SCG V  V I+ D K    KGFAYV+F +  ++++A+ 
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333

Query: 495 -------KLSESELHGRQIKVA 539
                  +LS+S  + R+++V+
Sbjct: 334 LNGKGINELSKSTTNKRKLRVS 355

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +3

Query: 288 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 464
           T  +   +   RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+
Sbjct: 5   TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64

Query: 465 VEAEAIQEAVK-LSESELHGRQIKV 536
            + E    A++ L+  E  GR ++V
Sbjct: 65  QDQETALSAMRNLNGREFSGRALRV 89

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +3

Query: 288 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 464
           T  +   +   RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+
Sbjct: 5   TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64

Query: 465 VEAEAIQEAVK-LSESELHGRQIKV 536
            + E    A++ L+  E  GR ++V
Sbjct: 65  QDQETALSAMRNLNGREFSGRALRV 89

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +3

Query: 288 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 464
           T  +   +   RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+
Sbjct: 5   TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64

Query: 465 VEAEAIQEAVK-LSESELHGRQIKV 536
            + E    A++ L+  E  GR ++V
Sbjct: 65  QDQETALSAMRNLNGREFSGRALRV 89

---

>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
 Frame = +3

Query: 255 AKEMQGGDPNATTSEAKEEM--DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 428
           A  +Q  + N +  E   ++  +++ +F+ N+ Y+C  ++++  F   G + +V +  DK
Sbjct: 299 ASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358

Query: 429 -FGQPKGFAYVEFVEA-EAIQEAVKLSESELHGRQIKVAPKR 548
               PKGFAY++F +A +A++  ++L      GR + V P +
Sbjct: 359 KTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 503
           + + N+ +  T ++VQ    + G +  V +        +GFA+ EFV A     A++ L 
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782

Query: 504 ESELHGRQI 530
            + L GR +
Sbjct: 783 NTHLLGRHL 791

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+ + E    A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 498 -LSESELHGRQIKV 536
            L+  E  GR ++V
Sbjct: 76  NLNGREFSGRALRV 89

---

>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 476
           +A +     S+FV N+ + CTPE++++ F + G V    I+T K G  +G   VEF + E
Sbjct: 114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNE 172

Query: 477 AIQEAVKLSESEL 515
           ++Q+A+   +  L
Sbjct: 173 SVQDAISKFDGAL 185



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +3

Query: 303 KEEMDSR-SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-VEAE 476
           +EE+D+   VF+ N+ Y+   + ++  F  CG V R  +  D  G  +GF  V +  E E
Sbjct: 212 REEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDE 271

Query: 477 AIQEAVKLSESELHGRQIKVAPKR 548
            I+     +  E+ GR ++V   R
Sbjct: 272 MIRAIDTFNGMEVEGRVLEVREGR 295

---

>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 500
           R++FVGN++   T E + + F+  G V +V I  DK G+PK FA+V F    ++  A+ L
Sbjct: 10  RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69

Query: 501 SES-ELHGRQIKV 536
               +L GR IK+
Sbjct: 70  LNGIKLFGRPIKI 82

---

>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2|
          Length = 208

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFA 452
           +PN    E +E M S +++VGN+ +  + E++ + F+ CGT+ R+ +  D+F   P GF 
Sbjct: 32  NPNGL-QELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFC 90

Query: 453 YVEF-VEAEAIQEAVKLSESELHGRQIKV 536
           ++ +    EA+     LS+++L  + I +
Sbjct: 91  FIIYSCPDEALNALKYLSDTKLDEKTITI 119

---

>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%)
 Frame = +3

Query: 282 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 461
           ++T  E      S S+FVGN+ Y  TPE++ + F+  G V R  I+T + G  +G   VE
Sbjct: 123 DSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVE 181

Query: 462 FVEAEAIQEAVK 497
           F  ++ +  A++
Sbjct: 182 FTNSDDVDRAIR 193



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 464
           +R ++  N+ ++    ++   F + G VN   +  D  G P G A VE+
Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEY 398

---

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 446
           G D +       E    R +F+G +DY  T E ++ HF   G +  V ++ D +  + +G
Sbjct: 14  GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRG 73

Query: 447 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 548
           F ++ +  +  I EA K    ++ GR ++  PKR
Sbjct: 74  FGFITYSHSSMIDEAQKSRPHKIDGRVVE--PKR 105



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +      + ++ +F   G +  + I+ DK  G+ +GFA+VEF + + + + V 
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181

Query: 498 LSESELHGRQIKV 536
             + +L+G+ + V
Sbjct: 182 QKQHQLNGKMVDV 194

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 494
           S +VFVGN+ +  T +++   F  CG +  + + TD + G+ KGF YV F + ++ ++ V
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424

Query: 495 KLSESELHGRQIKV 536
           +++   + GR  ++
Sbjct: 425 EMNGHFIAGRPCRL 438



 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +3

Query: 279 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAY 455
           P   T  +++  ++ +VFVG + +    + + Q F   GT+    ++ D + G+ KG+ Y
Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308

Query: 456 VEFVEAEAIQEAVKLS-ESELHGRQIKV 536
           V+F   EA + AV  +   E+ GR + +
Sbjct: 309 VDFETPEAAKAAVAANGTKEIDGRMVNL 336

---

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV-KL 500
           VFVGN+ Y  + +++ + FN  G V    ++ D + G  KG+ + EF ++E    AV KL
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 501 SESELHGRQIKV 536
           + SEL  R+I+V
Sbjct: 69  NNSELGPRKIRV 80

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
 Frame = +3

Query: 297 EAKEEMDSRSV-----FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYV 458
           E +E ++S SV     +VGN+ ++ T  ++ + F   GTV  V I+ D+   + +GFA+V
Sbjct: 101 EKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160

Query: 459 EFVEAEAIQEAVKLSE-SELHGRQIKV 536
                E  +EA++L + S++ GR +KV
Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKV 187



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHF-NSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++V N+ +A T + ++  F +  G ++   I     G+ +GF ++ F  AEA+  A+  +
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278

Query: 501 SESELHGRQIKV 536
           +E EL GR +++
Sbjct: 279 NEVELEGRPLRL 290

---

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 497
           R +F+G +DY  T E ++QHF   G +  V ++ D K  + +GF ++ +  A  + +A  
Sbjct: 17  RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76

Query: 498 LSESELHGRQIKVAPKR 548
               ++ GR ++  PKR
Sbjct: 77  ARPHKVDGRVVE--PKR 91



 Score = 38.1 bits (87), Expect = 0.017
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVK 497
           + +FVG +       +++ +F   GTV    I+ DK  + K GFA+VEF + + + +   
Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICL 167

Query: 498 LSESELHGRQIKV 536
               ++ G+ I V
Sbjct: 168 SRNHQIRGKHIDV 180

---

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +3

Query: 309 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 488
           E +S+++ V N+ YA + E +Q+ F    ++    +  +  G+PKG+A+VEF  AE  +E
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKE 513

Query: 489 AV-KLSESELHGRQIKV 536
           A+   + +E+ GR I++
Sbjct: 514 ALNSCNNTEIEGRAIRL 530



 Score = 37.7 bits (86), Expect = 0.022
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +3

Query: 249 KVAKEMQGGD-PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 425
           K  KEM     P A   + +    + S+FV N+      EE++           + +   
Sbjct: 256 KRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV 315

Query: 426 KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
           + G  K F YV+F+ AE + +A++L+  +L G +IK+
Sbjct: 316 RIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKL 352



 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF---VEAEAIQE 488
           S+++FV  +    T E +++ F   G+++   +     G  KGF +V+F    +A+A +E
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKE 609

Query: 489 AVKLSESELHGRQI 530
           A  + + E+ G ++
Sbjct: 610 A--MEDGEIDGNKV 621

---

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           QA  A+E+Q   P+   + AK +   R +F+ N+ Y+ T ++ ++ F+  G +  V +  
Sbjct: 300 QATPAEELQEEIPDEEQAIAKIQKTGR-LFLRNILYSSTEDDFKKLFSPYGELKEVHVAV 358

Query: 423 D-KFGQPKGFAYVEFVE-AEAIQEAVKLSESELHGRQIKV 536
           D + G  KGFAYV F +  EA+Q  ++L +    GR + +
Sbjct: 359 DTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHI 398



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = +3

Query: 249  KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 428
            K+  ++     NA + E K+  + + + V N+ +  T ++V + FNS G +  V +    
Sbjct: 715  KIQLKLSHRQGNAGSQEKKKAKNGK-IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF 773

Query: 429  FGQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKVAP 542
                +GFA+VEFV  +  + A+ +L    L GR++ + P
Sbjct: 774  DKSARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQP 812

---

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 34/159 (21%), Positives = 71/159 (44%)
 Frame = +3

Query: 60  AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 239
           A++ A  EDEE +   ++   D +D       DD     E D                  
Sbjct: 228 AKNVAEDEDEEEDDEDEDDDDDDDD-------DDEDDEDEDDEEEEEEEEEEPVKEAPGK 280

Query: 240 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 419
            + ++AK+    +      E  E   + ++FVGN+++  +  E++   +     N + ++
Sbjct: 281 RKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 340

Query: 420 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 341 DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 541

Query: 495 -KLSESELHGRQIKV 536
              ++ E+ GR I++
Sbjct: 542 NSCNKREIEGRAIRL 556



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
 Frame = +3

Query: 261 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 431
           E+QG  G PNA +  +K      ++FV  +    T E +++ F+  G+V R  I+TD+  
Sbjct: 557 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 607

Query: 432 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 530
           G  KGF +V+F    +A+A +EA  + + E+ G ++
Sbjct: 608 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 641

---

>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 22/82 (26%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEFVEA 473
           E ++ M S +++VGN+ +  + E++ + F+ CG++ ++ +  D+F   P GF ++ +   
Sbjct: 38  ELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTP 97

Query: 474 EAIQEAVK-LSESELHGRQIKV 536
           +    A+K LS+++L  R+I +
Sbjct: 98  QEALAALKYLSKTKLDDREITI 119

---

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 35/159 (22%), Positives = 69/159 (43%)
 Frame = +3

Query: 60  AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 239
           A++ A  EDEE          D ED +     DD     E D                  
Sbjct: 228 AKNVAEDEDEEE---------DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGK 278

Query: 240 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 419
            + ++AK+    +      E  E   + ++FVGN+++  +  E++   +     N + ++
Sbjct: 279 RKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 338

Query: 420 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 339 DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 539

Query: 495 -KLSESELHGRQIKV 536
              ++ E+ GR I++
Sbjct: 540 NSCNKREIEGRAIRL 554



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
 Frame = +3

Query: 261 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 431
           E+QG  G PNA +  +K      ++FV  +    T E +++ F+  G+V R  I+TD+  
Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 605

Query: 432 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 530
           G  KGF +V+F    +A+A +EA  + + E+ G ++
Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 639

---

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 32/159 (20%), Positives = 73/159 (45%)
 Frame = +3

Query: 60  AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 239
           A++ A  EDEE +   ++   D +D +     +D  +  E +                  
Sbjct: 229 AKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEAPGKR-------- 280

Query: 240 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 419
            + ++AK+    +      E  E   + ++FVGN+++  +  E++   +     N + ++
Sbjct: 281 -KKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 339

Query: 420 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 340 DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 540

Query: 495 -KLSESELHGRQIKV 536
              ++ E+ GR I++
Sbjct: 541 NSCNKREIEGRAIRL 555



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
 Frame = +3

Query: 261 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 431
           E+QG  G PNA +  +K      ++FV  +    T E +++ F+  G+V R  I+TD+  
Sbjct: 556 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 606

Query: 432 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 530
           G  KGF +V+F    +A+A +EA  + + E+ G ++
Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 640

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 482
           EE D+R+VF   +     P ++++ F++ G V  V +++D+  +  KG AYVEFV+  ++
Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207

Query: 483 QEAVKLSESELHGRQIKV 536
             A+ L+   + G  I V
Sbjct: 208 PLAIGLTGQRVLGVPIIV 225

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 45/82 (54%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 476
           EA ++  S +++V N+D + + E++++ F+  GTV    ++ D  G  KG  +V F   E
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPE 369

Query: 477 AIQEAVKLSESELHGRQIKVAP 542
              EA+    S+L G+ I+  P
Sbjct: 370 EATEAM----SQLSGKMIESKP 387



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++F+ N+D +   + +   F+S G +    +  D  GQ KG+ +V++   E+ Q+A+ KL
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184

Query: 501 SESELHGRQIKVAP 542
           +   L+ +Q+ V P
Sbjct: 185 NGMLLNDKQVYVGP 198



 Score = 38.1 bits (87), Expect = 0.017
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKE-----------EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR 407
           ++QG  PN +T+               +  + S++VG++D+  T  ++   F   GTV  
Sbjct: 5   QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64

Query: 408 VTILTDKFGQPK-GFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 536
           V +  D   +   G+ YV F   +    A+ +L+   L+G+ I+V
Sbjct: 65  VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV 109

---

>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVEFVEAEAIQEAV 494
           SR +FVGN+ +  T + +++HF  CG + ++ + T +  G+ KGFA+++F   E     +
Sbjct: 238 SRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNEL 297

Query: 495 K-LSESELHGRQIKV 536
           K  S  ++ GR +++
Sbjct: 298 KDKSCRKIAGRPLRM 312



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN--------------- 404
           G +      + K++ +   V++GN+ +  T +++ + F +    N               
Sbjct: 108 GDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRL 167

Query: 405 ---RVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
              RV        + KGF Y+ F   E ++  ++LSES L+GR + +
Sbjct: 168 SMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 482
           EE D+R+VF   +     P ++++ F++ G V  V +++D+  +  +G AYVEFV+  ++
Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSV 207

Query: 483 QEAVKLSESELHGRQIKV 536
           + A+ L+   + G  I V
Sbjct: 208 RLAIGLTGQRVLGVPIIV 225

---

>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 500
           R++FVGN++   T E + + F+  G V +V I  DK G+ K FA+V F    ++  A+ L
Sbjct: 10  RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69

Query: 501 SES-ELHGRQIKV 536
               +L GR IK+
Sbjct: 70  LNGIKLFGRPIKI 82

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLS 503
           +FVG +++    + ++ HF+S G ++ V ++ D+  Q  +GF ++ F   E   +A++  
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query: 504 ESE-LHGRQIKV 536
             E L GRQI+V
Sbjct: 68  NGESLDGRQIRV 79

---

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N+D   T +E    F   G +  ++++ D+  +P+GF +V +   E  Q+AV +L
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321

Query: 501 SESELHGRQIKV 536
           ++ E  G+++ V
Sbjct: 322 NDKEYKGKKLYV 333



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++F+ N+      E ++  F++ GT+    I+TD+ G+ KGF +V +   E   +AV ++
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424

Query: 501 SESELHGRQIKVA 539
           ++  L G+ + VA
Sbjct: 425 NQRMLAGKPLYVA 437



 Score = 36.6 bits (83), Expect = 0.049
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +3

Query: 309 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 488
           +M + +VF+ N+D A   + +   F++ G +    +  D+ G  KG+ +V F   E+   
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223

Query: 489 AVK 497
           A++
Sbjct: 224 AIE 226



 Score = 33.1 bits (74), Expect = 0.54
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAV 494
           S S++VG +D + T   + + FNS G V  + +  D   +   G+AYV F   E  ++A+
Sbjct: 79  SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138

Query: 495 -KLSESELHGRQIKV 536
            +L+ + + GR  ++
Sbjct: 139 DELNYTLIKGRPCRI 153

---

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
 Frame = +3

Query: 84  DEEHEVYGQEIPVDAED---VEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKV 254
           +E+H+   Q+ PV  E    VE  A  D +++                         ++ 
Sbjct: 5   EEQHQQQQQQQPVAVETPSAVEAPASADPSSE-----------------QSVAVEGNSEQ 47

Query: 255 AKEMQG-GDPNATTSEA---KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           A++ QG  DP+   + A     E   R ++VGN+D A T + ++Q+F   G +  + I+ 
Sbjct: 48  AEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI 107

Query: 423 DKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIK 533
           DK  +   +A+VE+ ++     A++     L+G+QI+
Sbjct: 108 DKNNKNVNYAFVEYHQSHDANIALQ----TLNGKQIE 140

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 473
           E  E    R +F+G +DY  T + ++ HF   G +  V ++ D K  + +GF ++ + ++
Sbjct: 16  EITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQS 75

Query: 474 EAIQEAVKLSESELHGRQIKVAPKR 548
             I  A      ++ GR ++  PKR
Sbjct: 76  YMIDNAQNARPHKIDGRTVE--PKR 98



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
 Frame = +3

Query: 303 KEEMDS-------RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYV 458
           ++E+DS       + +FVG +      E ++++F   G +  V I++DK  G+ +GFA++
Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161

Query: 459 EFVEAEAIQEAVKLSESELHGRQIKV 536
           EF + + + + +      +  + + V
Sbjct: 162 EFDDYDPVDKIILQKTHSIKNKTLDV 187

---

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = +3

Query: 282 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 461
           N T++     +    +FVG +D+     ++++ F+  G+V  V I+ D+ G  KG+ +V 
Sbjct: 20  NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79

Query: 462 FVEAE----AIQEAVKLSESELHGRQIKVAP 542
           F   E     +QEA KL+  +   +++ + P
Sbjct: 80  FETQEDAQKILQEAEKLNYKD---KKLNIGP 107

---

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = +3

Query: 282 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 461
           N T++     +    +FVG +D+     ++++ F+  G+V  V I+ D+ G  KG+ +V 
Sbjct: 20  NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79

Query: 462 FVEAE----AIQEAVKLSESELHGRQIKVAP 542
           F   E     +QEA KL+  +   +++ + P
Sbjct: 80  FETQEDAQKILQEAEKLNYKD---KKLNIGP 107

---

>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F|
          Length = 941

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +3

Query: 273 GDPNATTSEAK----EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           G  NA   E+       M+   +FV N+  AC+ EE+ + F+  GT+  V ++     Q 
Sbjct: 704 GPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQF 763

Query: 441 KGFAYVEFVEAEAIQEAV 494
           KG AYVEF +    Q AV
Sbjct: 764 KGIAYVEFEKPGEAQRAV 781

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E +++ F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 501 SESELHGRQIKV 536
           +  EL+G+QI V
Sbjct: 252 NGKELNGKQIYV 263



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 504 ESELHGRQIKVAP 542
            +E++GR +   P
Sbjct: 351 -TEMNGRIVATKP 362

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E +++ F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 501 SESELHGRQIKV 536
           +  EL+G+QI V
Sbjct: 252 NGKELNGKQIYV 263



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 504 ESELHGRQIKVAP 542
            +E++GR +   P
Sbjct: 351 -TEMNGRIVATKP 362

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
 Frame = +3

Query: 288 TTSEAKEEMDSRSV------FVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 446
           T+ E++EE   + +      F+ N+ Y  T ++ ++ F+  G +  V I  D + GQ KG
Sbjct: 313 TSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKG 372

Query: 447 FAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 542
           FAYV F  A+ A    V+L +    GR + + P
Sbjct: 373 FAYVLFKNADNAATAFVELDKQIFQGRLLHILP 405



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 273 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 452
           G      S  K++ +   + V N+ +  T ++V + F+S G +  V +        +GFA
Sbjct: 736 GTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFA 795

Query: 453 YVEFVEAEAIQEAV-KLSESELHGRQI 530
           +VEF+  +  + A+ +L    L GR++
Sbjct: 796 FVEFLLPKEAENAMDQLQGVHLLGRRL 822

---

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = +3

Query: 294 SEAKEEMDS-RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFV 467
           SEA  E +  R +F+G + +  T E +++HF   GT+    ++ D    + +GF +V ++
Sbjct: 4   SEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYL 63

Query: 468 EAEAIQEAVKLSESELHGRQIKVAPKR 548
             + +  A+     ++ GR ++  PKR
Sbjct: 64  STDEVDAAMTARPHKVDGRVVE--PKR 88



 Score = 38.1 bits (87), Expect = 0.017
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV- 494
           + +FVG +      + ++++F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVI 164

Query: 495 -KLSESELHGRQIKVA 539
            K      H  Q++ A
Sbjct: 165 QKYHTVNNHNSQVRKA 180

---

>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 479
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176

---

>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 479
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176

---

>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 479
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F +  ++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 163

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176

---

>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 479
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176

---

>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 479
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
 Frame = +3

Query: 261 EMQGGDPNATTSE--AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KF 431
           +    +P  T  E  A++  ++  +F+ N+ Y  + E+ +  F+  G +  V I  D + 
Sbjct: 288 QQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRT 347

Query: 432 GQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 542
           G+ KGF YV+F++ E    A + L +    GR + + P
Sbjct: 348 GKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILP 385



 Score = 33.1 bits (74), Expect = 0.54
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 357 TPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           T E++++ F+  G V  V ++  + G+ + FA++ +  A+A + AVK
Sbjct: 14  TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVK 60



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 288 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEF 464
           + S  K+   S  + + N+ +  T +++ + F + G +  V +   KF Q  +GFA+VEF
Sbjct: 706 SASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRV-PKKFDQSARGFAFVEF 764

Query: 465 -VEAEAIQEAVKLSESELHGRQI 530
            +  EA     +L    L GR++
Sbjct: 765 NLMKEAETAMSQLEGVHLLGRRL 787

---

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE----AIQEAV 494
           +FVG +D+     ++++ F+  G+V  V I+ D+ G  KG+ ++ F   E     +QEA 
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94

Query: 495 KLSESELHGRQIKVAP 542
           KL+  +   +++ + P
Sbjct: 95  KLNYKD---KKLNIGP 107

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLS 503
           +FVG +++    + ++ HF+S G ++ V ++ D+  Q  +GF ++ F   E    A++  
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query: 504 ESE-LHGRQIKV 536
             E L GRQI+V
Sbjct: 68  NGESLDGRQIRV 79

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E ++  F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 501 SESELHGRQIKV 536
           +  EL+G+QI V
Sbjct: 252 NGKELNGKQIYV 263



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 504 ESELHGRQIKVAP 542
            +E++GR +   P
Sbjct: 351 -TEMNGRIVATKP 362



 Score = 32.7 bits (73), Expect = 0.70
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++FV N+D +   + +    ++ G +    ++ D+ G  KG+ +V F   EA + A+ K+
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKM 158

Query: 501 SESELHGRQIKV 536
           +   L+GR++ V
Sbjct: 159 NGMLLNGRKVFV 170

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E ++  F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 501 SESELHGRQIKV 536
           +  EL+G+QI V
Sbjct: 252 NGKELNGKQIYV 263



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 504 ESELHGRQIKVAP 542
            +E++GR +   P
Sbjct: 351 -TEMNGRIVATKP 362

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E ++  F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 501 SESELHGRQIKV 536
           +  EL+G+QI V
Sbjct: 252 NGKELNGKQIYV 263



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 504 ESELHGRQIKVAP 542
            +E++GR +   P
Sbjct: 351 -TEMNGRIVATKP 362

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-L 500
           V+VGN+ +      ++  F+  G V    ++ D+  G+ KGF +V +  ++ +Q A+K L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query: 501 SESELHGRQIKVA 539
             ++L GRQI+V+
Sbjct: 266 DGADLDGRQIRVS 278

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +3

Query: 291 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 470
           T+E K+ +DS+ + + N+ +  T ++VQ+ F + G++  V +      + +GFA+ E+V 
Sbjct: 694 TTETKKAIDSK-ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVS 752

Query: 471 AEAIQEAVK-LSESELHGRQI 530
           A+  + A+  L  + L GR++
Sbjct: 753 AKEAEHAMSALQGTHLLGRRL 773



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSV---------FVGNVDYACTPEEVQQHFNSCGTVNRV 410
           K+ +G  P A T   +E  +  ++         F+ N+ Y    E+ +Q F+  G +  V
Sbjct: 271 KKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEV 330

Query: 411 TI-LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESEL-HGRQIKVAP 542
            + +  K GQ KGFA+V+F + E    A +  + ++  GR + + P
Sbjct: 331 HLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILP 376

---

>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = +3

Query: 309 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 488
           +M   ++FVG +D      E+++ F   G+V  V I+T + G  KG+ +V F E   IQ 
Sbjct: 43  KMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQT 102

Query: 489 AVKLSESELHGRQIKVAP 542
            V    S   G+++K+ P
Sbjct: 103 IVDQPIS-FKGKKLKLGP 119

---

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           Q +V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+ ++ 
Sbjct: 79  QQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136

Query: 423 DK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 548
            K  G+P+G+A++E+     +  A K ++  ++ GR++ V  +R
Sbjct: 137 SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180

---

>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)|
          Length = 261

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 497
           S+F+ NV  A  PE++++ F   G +  V I  D + + P+GFAYV+F +    ++A+  
Sbjct: 11  SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70

Query: 498 LSESELHGRQIKV 536
           L+   + GRQI++
Sbjct: 71  LNRKWVCGRQIEI 83

---

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKG 446
           GGD  A    A +     S+ + N+ Y  TP ++++ F   G +  V I  DK+  Q KG
Sbjct: 6   GGDRRA----APDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61

Query: 447 FAYVEFVEAEAIQEAVKLSESEL-HGRQIKV 536
           F +V F E    + A+  ++ +L  GR+++V
Sbjct: 62  FGFVRFYERRDAEHALDRTDGKLVDGRELRV 92

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE-AIQEAVKL 500
           +F+ N+ Y  T E+ +Q F+  G +  V +  D + GQ KGFAYV F + E A    ++L
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362

Query: 501 SESELHGRQIKVAP 542
            +    GR + + P
Sbjct: 363 DKQIFQGRLLHILP 376



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +3

Query: 291 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-V 467
           TS+  ++  S  + V N+ +  T ++V + F+S G +  V +        +GFA+VEF +
Sbjct: 702 TSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLL 761

Query: 468 EAEAIQEAVKLSESELHGRQI 530
            +EA     +L    L GR++
Sbjct: 762 PSEAENAMDQLQGVHLLGRRL 782

---

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           Q +V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+ ++ 
Sbjct: 79  QQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136

Query: 423 DK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 548
            K  G+P+G+A++E+     +  A K ++  ++ GR++ V  +R
Sbjct: 137 SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
 Frame = +3

Query: 273 GDPNATT---------SEAKEEM-DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           G P +TT         +E +E++ DS  +FV N+ Y  + E++++ F++ G ++ +    
Sbjct: 374 GPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI 433

Query: 423 DKFGQ-PKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 542
           D   + PKGFA+V F+  E A++   ++      GR + V P
Sbjct: 434 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 475



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ----PKGFAYVEF 464
           E +E +   ++F+ N++++ T E ++  F+  G +   TI   K         GF +VE+
Sbjct: 714 EEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 773

Query: 465 VEAEAIQEAVKLSESEL---HGRQIKVAPKRT 551
            + E  Q+A+K  +      H  +++++ + T
Sbjct: 774 KKPEQAQKALKQLQGHTVDGHKLEVRISERAT 805

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +3

Query: 294 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVE 470
           S+A    +S  +F+G +++  T + ++++F   GTV  + I+ D   G+ +GF ++ F +
Sbjct: 150 SKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEK 209

Query: 471 AEAIQEAVKLSESELHGRQIKVAPKR 548
             ++ E VK ++  L G+ I   PKR
Sbjct: 210 PSSVDEVVK-TQHILDGKVID--PKR 232



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAI 482
           E+  +  +FVG +     P+E ++ F+  GT+    ++ DK  GQ +GF +V +  A+A+
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297

Query: 483 QEAVKLSESELHGRQIKV 536
               +    +   R+I++
Sbjct: 298 DRVCQNKFIDFKDRKIEI 315

---

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           Q  V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+ ++ 
Sbjct: 79  QQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136

Query: 423 DK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 548
           +K  G+P+G+A++E+     +  A K ++  ++ GR++ V  +R
Sbjct: 137 NKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180

---

>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 422
           Q  V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+ I+ 
Sbjct: 79  QQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVY 136

Query: 423 DK----FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 548
           +K     G+P+G+A++E+     +  A K ++  ++ GR++ V  +R
Sbjct: 137 NKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 183

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++VGN+ +      ++  FN  G V    ++ D+  G+ KGF +V    ++ +Q+A+  L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318

Query: 501 SESELHGRQIKVA 539
           + ++L GRQI+V+
Sbjct: 319 NGADLDGRQIRVS 331

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 294 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 473
           SE    ++ R +F+G +   CT  +++  F+S G +    IL    G  +G A+V F   
Sbjct: 99  SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158

Query: 474 EAIQEAVK 497
              Q A+K
Sbjct: 159 TMAQTAIK 166

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 294 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 473
           SE    ++ R +F+G +   CT  +++  F+S G +    IL    G  +G A+V F   
Sbjct: 99  SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158

Query: 474 EAIQEAVK 497
              Q A+K
Sbjct: 159 AMAQTAIK 166

---

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E +   +++V N+    T +E+++ F   G + +  IL DK  G+P+G A+V F + E  
Sbjct: 183 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEA 242

Query: 483 QEAV 494
           QEA+
Sbjct: 243 QEAI 246



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 446
           GGD     ++A   ++  ++ V  +    T  E+   F +CG +N   I+ D K G   G
Sbjct: 88  GGDGGGGDTQA---VNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFG 144

Query: 447 FAYVEFVEAEAIQEAVK-LSESELHGRQIKVAPKR 548
           +A+V+F      Q A+K ++   +  +++KV+  R
Sbjct: 145 YAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR 179

---

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 446
           GG P  +     +      VFVG +      +E+   F   G +  + ++ D   GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207

Query: 447 FAYVEFVEAEAIQEAVKLSES 509
           +A++ F   EA QEAVKL +S
Sbjct: 208 YAFITFCGKEAAQEAVKLCDS 228

---

>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV-- 494
           S++VGN+ Y  +  ++   F   G+V RV + TD+  G+ +GF +VE +EA+A + A   
Sbjct: 2   SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVE-LEADAEETAAIE 60

Query: 495 KLSESELHGRQIKV 536
            L  +E  GR +KV
Sbjct: 61  ALDGAEWMGRDLKV 74

---

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E +   +++V N+    T +E+++ F   G + +  IL DK  G+P+G A+V F + E  
Sbjct: 166 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEA 225

Query: 483 QEAV 494
           QEA+
Sbjct: 226 QEAI 229



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 357 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 530
           T  E+   F +CG +N   I+ D K G   G+A+V+F      Q A+K L+   +  +++
Sbjct: 97  TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRL 156

Query: 531 KVAPKR 548
           KV+  R
Sbjct: 157 KVSYAR 162

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +VF+ N+D +   + + + F+S GT+    +  D  G+ KG+ +V+F + E  Q A+ KL
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192

Query: 501 SESELHGRQIKV 536
           +   L+ +Q+ V
Sbjct: 193 NGMLLNDKQVFV 204



 Score = 37.0 bits (84), Expect = 0.037
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 285 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 464
           A  +EA +   + S++VG++D +     +   FN    V+ + +  D   +  G+AYV F
Sbjct: 33  AAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNF 92

Query: 465 VEAEAIQEAVK-LSESELHGRQIKV 536
              E    A++ L+ + +  R I++
Sbjct: 93  ANPEDASRAMESLNYAPIRDRPIRI 117



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 16/74 (21%), Positives = 39/74 (52%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 485
           E++   ++++ N+D +   E++++ F+  G V    ++ +  G  +GF +V +   E   
Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEAL 382

Query: 486 EAVKLSESELHGRQ 527
            A+K    ++ GR+
Sbjct: 383 LAMKEMNGKMIGRK 396

---

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           +S+++ + N+ Y+ T E +++ F     +    +  +  G+PKG+A++EF   E  +EA+
Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 540

Query: 495 -KLSESELHGRQIKV 536
              ++ E+ GR I++
Sbjct: 541 NSCNKMEIEGRTIRL 555



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 33/163 (20%), Positives = 70/163 (42%)
 Frame = +3

Query: 48  IGLGAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXX 227
           + + A+  A  ED+E E    E   D +D E     DD  +  E                
Sbjct: 231 VPMKAKSVAEEEDDEEEDEDDE---DEDDEEEDDEDDDEEEEEE-----------EPVKA 276

Query: 228 XXXXXQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR 407
                + ++ K+ +  +      E  E     ++F+GN++   +  E++   +     N 
Sbjct: 277 APGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKND 336

Query: 408 VTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
           + ++  + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 337 LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF---VEAEAIQ 485
           S+++FV  +    T E +++ F   G+V R  I+TD+  G  KGF +V+F    +A+A +
Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 623

Query: 486 EAVKLSESELHGRQI 530
           EA  + + E+ G ++
Sbjct: 624 EA--MEDGEIDGNKV 636

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 456 VEFVEAEAIQEAVKLSESELHGRQI 530
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 456 VEFVEAEAIQEAVKLSESELHGRQI 530
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 456 VEFVEAEAIQEAVKLSESELHGRQI 530
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 456 VEFVEAEAIQEAVKLSESELHGRQI 530
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 456 VEFVEAEAIQEAVKLSESELHGRQI 530
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 455
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 456 VEFVEAEAIQEAVKLSESELHGRQI 530
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264

---

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +F+ N+ Y  T ++V++HF   G +  V +  D  G  KGFA + + +  +   A +   
Sbjct: 310 LFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQTDG 369

Query: 507 SELHGRQIKVAP 542
           +   GR + + P
Sbjct: 370 TVFQGRIVHILP 381

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEA 473
           +A+ + +  SVFV NV Y  T E +  HF+  G+V     + DK  G  KG A+V F + 
Sbjct: 282 KAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQ 341

Query: 474 EAIQEAVK 497
               E +K
Sbjct: 342 YTYNECIK 349

---

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 473
           + KE    R +F+G + +  T + +++HF   GT+    ++ D +  + +GF +V +   
Sbjct: 27  DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86

Query: 474 EAIQEAVKLSESELHGRQIKVAPKR 548
           E +  A+     ++ GR ++  PKR
Sbjct: 87  EEVDAAMCARPHKVDGRVVE--PKR 109

---

>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 494
           S  +FV N+ Y     E++  F+  G +  + +  D +F   KGFAYV++ + +A  EA 
Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353

Query: 495 KLSESEL-HGRQIKVAP 542
           +  + ++  GR + + P
Sbjct: 354 RNLDGKIFQGRLLHILP 370



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 434
           K M   +       AK+    R+ + + N+ +  T ++V+  F + G +  V +      
Sbjct: 675 KGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 734

Query: 435 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 530
             +GF + +FV A   + A+  L  + L GR++
Sbjct: 735 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 767

---

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 473
           + KE    R +F+G + +  T + +++HF   GT+    ++ D +  + +GF +V +   
Sbjct: 27  DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86

Query: 474 EAIQEAVKLSESELHGRQIKVAPKR 548
           E +  A+     ++ GR ++  PKR
Sbjct: 87  EEVDAAMCARPHKVDGRVVE--PKR 109

---

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 473
           + KE    R +F+G + +  T + +++HF   GT+    ++ D +  + +GF +V +   
Sbjct: 27  DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86

Query: 474 EAIQEAVKLSESELHGRQIKVAPKR 548
           E +  A+     ++ GR ++  PKR
Sbjct: 87  EEVDAAMCARPHKVDGRVVE--PKR 109

---

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFV N+DY    +++++ F+  G V R  IL DK G+ +G   V F ++    +A+ + 
Sbjct: 203 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMF 262

Query: 504 ESEL 515
             +L
Sbjct: 263 NGQL 266



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +FV N+ +  T + ++  FN CG V    I  +  G+ KG   V+F   E  + A ++  
Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 711

Query: 507 S-ELHGRQIKV 536
             +L GR+I V
Sbjct: 712 GMKLSGREIDV 722

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV- 494
           S ++F+ N+      + +   F+  G +    I TD+ G+ KGF +V F E  A +EA+ 
Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 183

Query: 495 KLSESELHGRQIKVAP 542
            L+   L+G++I VAP
Sbjct: 184 ALNGMLLNGQEIYVAP 199



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++FV N+D +   E++++ F   GT+    ++  + G+ KGF +V F   E   +A+ + 
Sbjct: 322 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 381

Query: 501 SESELHGRQIKVA 539
           ++  + G+ + VA
Sbjct: 382 NQQIVAGKPLYVA 394

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
 Frame = +3

Query: 279 PNATTSEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 449
           P  T  E   E  +++  +F+ N+ Y    E+ ++ F+  G +  V +  D + GQ KGF
Sbjct: 329 PQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGF 388

Query: 450 AYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 542
           AYV F +++ A+   V+L +    GR + + P
Sbjct: 389 AYVLFKDSKNAVNAYVELDKQIFQGRLLHILP 420



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +3

Query: 294 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 473
           ++ K    S  + V N+ +  T ++V + FNS G +  V +        +GFA+VEF+  
Sbjct: 754 TKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLP 813

Query: 474 EAIQEAVKLSESELHG 521
           +  + A+     +LHG
Sbjct: 814 KEAENAM----DQLHG 825

---

>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 21/76 (27%), Positives = 37/76 (48%)
 Frame = +3

Query: 309 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 488
           E+    +FVG    + T  E+++HF     V  V ++    GQ KG+ ++ F   +  +E
Sbjct: 63  ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122

Query: 489 AVKLSESELHGRQIKV 536
             KL+  +L  R  K+
Sbjct: 123 IRKLTPKQLEFRSRKL 138

---

>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E++   +++V N+  + T E+++  F   G + +  IL DK  G P+G A++ F + E  
Sbjct: 159 EQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEA 218

Query: 483 QEAV 494
           QEA+
Sbjct: 219 QEAI 222

---

>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
 Frame = +3

Query: 291 TSEAKEEMD--------SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 443
           +S  +EE+D        S  +FV N+ Y  +  +++  F+  G +  + +  D +    K
Sbjct: 283 SSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSK 342

Query: 444 GFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 542
           GFAYV+++E +A  +A K L      GR + + P
Sbjct: 343 GFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILP 376



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 434
           K M   +       AK+    R+ + + N+ +  T ++V+  F + G +  V +      
Sbjct: 680 KAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 739

Query: 435 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 530
             +GF + +FV A   + A+  L  + L GR++
Sbjct: 740 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 772

---

>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 18/89 (20%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
 Frame = +3

Query: 249 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 428
           K+ +E+   DP    +  ++    R++F+  ++Y  +  ++++ F   G + ++ ++ D+
Sbjct: 80  KLEREIALWDPTEIKNATEDPF--RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQ 137

Query: 429 -FGQPKGFAYVEFVEAEAIQEAVKLSESE 512
             G+PKG+A++E+     +  A K ++ +
Sbjct: 138 ESGKPKGYAFIEYEHERDMHAAYKHADGK 166

---

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFV N+DY    +++++ F+  G V R  IL DK G+ +G   V F ++    +A+ + 
Sbjct: 164 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 223

Query: 504 ESEL 515
             +L
Sbjct: 224 NGQL 227



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +FV N+ +  T + ++  FN CG V    I  +  G+ KG   V+F   E  + A ++  
Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 672

Query: 507 S-ELHGRQIKV 536
             +L GR+I V
Sbjct: 673 GMKLSGREIDV 683

---

>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 288 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 464
           T ++  +   +  +FVG+V    T EE++ +F   G V  V ++ DK  GQ +G  +V++
Sbjct: 109 TGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168

Query: 465 VEAEAIQEAVKLSESEL 515
             ++    A++   +++
Sbjct: 169 ATSKDADRAIRALHNQI 185

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +       ++ +HF+  GTV +  I+ DK  G+ +GF +V F   +A  +A  
Sbjct: 98  KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157

Query: 498 LSESELHGRQIKV 536
           +    + G +++V
Sbjct: 158 VKFHPIQGHRVEV 170

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 330 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-LS 503
           FVG + +A   E ++Q F + G V    ++TD+  G+ +GF +V F   +++ +A++ ++
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 504 ESELHGRQIKV 536
             EL GR I V
Sbjct: 71  GKELDGRNITV 81

---

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +VFV N+DY    +++++ F+  G V R  IL DK G+ +G   V F ++    +A+ + 
Sbjct: 204 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 263

Query: 504 ESEL 515
             +L
Sbjct: 264 NGQL 267



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +FV N+ +  T + ++  FN CG V    I  +  G+ KG   V+F   E  + A ++  
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 712

Query: 507 S-ELHGRQIKV 536
             +L GR+I V
Sbjct: 713 GMKLSGREIDV 723

---

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +FVG +    T  ++ + F++ GTV    I+ D+ G  KG+ +V F   E  QEA +L  
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTF---ETEQEAQRLQA 91

Query: 507 S----ELHGRQIKVAP 542
                 L  R++ +AP
Sbjct: 92  DGECVVLRDRKLNIAP 107

---

>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein|
           crp79) (Poly(A)-binding protein) (PABP) (Meiotic
           expression up-regulated protein 5)
          Length = 710

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 13/76 (17%)
 Frame = +3

Query: 309 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV-TILTDK---------FGQPKG---F 449
           E +S +++VGN+D   + EE+ +HF+  G V  +   L D          F  PK    +
Sbjct: 13  EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72

Query: 450 AYVEFVEAEAIQEAVK 497
            +V+FV AE+I+E +K
Sbjct: 73  GFVKFVNAESIEEVLK 88

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 494
           ++ +FVG +    T E+V+Q+F   G V+   ++ DK   + +GF +V F   + +++  
Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167

Query: 495 KLSESELHGRQI---KVAPK 545
           ++   E++ + +   K  PK
Sbjct: 168 EIHFHEINNKMVECKKAQPK 187

---

>NOP12_CANAL (Q5AHI7) Nucleolar protein 12|
          Length = 454

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQ 485
           + R++FVGN+D+    E + ++FNS     V  V I+ D K    KGFA V+F +  ++ 
Sbjct: 263 NKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVN 322

Query: 486 EAVKLSESELH------GRQIKVA 539
           +A+ L++  L       GR+++++
Sbjct: 323 KALLLNDKPLETGTQKKGRKLRIS 346

---

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 267 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 443
           QG DP       KE    R +F+G + +  T + +++HF   G +    ++ D +  + +
Sbjct: 16  QGHDP-------KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSR 68

Query: 444 GFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 548
           GF +V +   E +  ++     ++ GR ++  PKR
Sbjct: 69  GFGFVTYSCVEEVDASMSARPHKVDGRVVE--PKR 101

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 539

Query: 495 -KLSESELHGRQIKV 536
              ++ E+ GR I++
Sbjct: 540 NSCNKMEIEGRTIRL 554



 Score = 37.4 bits (85), Expect = 0.028
 Identities = 20/96 (20%), Positives = 50/96 (52%)
 Frame = +3

Query: 249 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 428
           ++ K+ +  +      E  E     ++F+GN++   +  E++   +     N + ++  +
Sbjct: 283 EMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVR 342

Query: 429 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
            G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 343 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
 Frame = +3

Query: 261 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 431
           E+QG  G PNA +  +K      ++FV  +    T E +++ F   G+V R  I+TD+  
Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 605

Query: 432 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 530
           G  KGF +V+F    +A+A +EA  + + E+ G ++
Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 639

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           +S+++ + N+ Y+ T E +Q+ F     +    +  +  G+ KG+A++EF   E  +EA+
Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEAL 542

Query: 495 -KLSESELHGRQIKV 536
              ++ E+ GR I++
Sbjct: 543 NSCNKMEIEGRTIRL 557



 Score = 37.4 bits (85), Expect = 0.028
 Identities = 20/96 (20%), Positives = 49/96 (51%)
 Frame = +3

Query: 249 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 428
           ++ K+ +  +      E  E     ++F+GN++   +  E++   +     N +  +  +
Sbjct: 286 EMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVR 345

Query: 429 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
            G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 346 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
 Frame = +3

Query: 261 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 431
           E+QG  G PNA +  +K      ++FV  +    T E +++ F   G+V R  I+TD+  
Sbjct: 558 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 608

Query: 432 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 530
           G  KGF +V+F    +A+A +EA  + + E+ G ++
Sbjct: 609 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 642

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           ++F+ N+D +   + + + F+S GT+    +  D  G+ KG+ +V+F + E+ Q A+ KL
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196

Query: 501 SESELHGRQIKV 536
           +   ++ +Q+ V
Sbjct: 197 NGMLMNDKQVFV 208



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 485
           E+    ++++ N+D +   E++++ F+  G V    ++ +  G  +GF +V +   E   
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEAL 386

Query: 486 EAVKLSESELHGRQIKVAP 542
            A+    SE++G+ I   P
Sbjct: 387 RAL----SEMNGKMIGRKP 401

---

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 273 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 449
           G P  + S    + D   +F+G + +  +P+ ++ +F+  G +    ++ D    + +GF
Sbjct: 5   GSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64

Query: 450 AYVEFVEAEAIQEAVKLSESELHGRQI--KVA-PKR 548
            +V F +  ++ + +     EL  + I  KVA P+R
Sbjct: 65  GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR 100



 Score = 37.7 bits (86), Expect = 0.022
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 494
           ++ +FVG +      E+V+Q+F   G V    ++ DK   + +GF +V F   + +++  
Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168

Query: 495 KLSESELHGRQI---KVAPK 545
           ++   E++ + +   K  PK
Sbjct: 169 EIHFHEINNKMVECKKAQPK 188

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 434
           ++++ GD      E +       +FVGN+ ++     + + F   G V  V ++ DK  G
Sbjct: 68  EDVEDGDDGV--EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTG 125

Query: 435 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 536
           + +GF +V     E ++ A  + +  EL GR ++V
Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160

---

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +3

Query: 279 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAY 455
           P       +  +  + +FVG +      E ++++F   G V  V +LTDK  G+ +GFA+
Sbjct: 109 PRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAF 168

Query: 456 VEFVEAEAIQEAV 494
           VEF + +A+ +A+
Sbjct: 169 VEFDDYDAVDKAI 181

---

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 473
           E KE    R +F+G + +  T + +++HF   G +    ++ D +  + +GF +V +   
Sbjct: 19  EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78

Query: 474 EAIQEAVKLSESELHGRQIKVAPKR 548
           E +  ++     ++ GR ++  PKR
Sbjct: 79  EEVDASMSARPHKVDGRVVE--PKR 101

---

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 446
           GG P  +    ++      +FVG +      +E+   F   G +  + ++ D   G  +G
Sbjct: 55  GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114

Query: 447 FAYVEFVEAEAIQEAVKL 500
           +A+V F   EA QEAVKL
Sbjct: 115 YAFVTFCTKEAAQEAVKL 132

---

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 446
           GG P  +    ++      +FVG +      +E+   F   G +  + ++ D   G  +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204

Query: 447 FAYVEFVEAEAIQEAVKL 500
           +A+V F   EA QEAVKL
Sbjct: 205 YAFVTFCTKEAAQEAVKL 222

---

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 446
           GG P  +    ++      +FVG +      +E+   F   G +  + ++ D   G  +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204

Query: 447 FAYVEFVEAEAIQEAVKL 500
           +A+V F   EA QEAVKL
Sbjct: 205 YAFVTFCTKEAAQEAVKL 222

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = +3

Query: 282 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYV 458
           ++T S + +   +R ++VGN+      +E++      G +    ++ DK+ G+ + F +V
Sbjct: 71  SSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130

Query: 459 EFVEAEAIQEAV-KLSESELHGRQIKV 536
                E     + KL+++E+ GR+IKV
Sbjct: 131 TMKTVEDANAVIEKLNDTEIGGRKIKV 157

---

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 503
           +FVG + Y  T   ++++F   G +    ++TD+  G+ +G+ +V   +  A + A K  
Sbjct: 13  IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query: 504 ESELHGRQIKV 536
              + GR+  V
Sbjct: 73  NPIIDGRKANV 83

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEA 473
           E ++  +S  +FV N+ Y  T E++++ F+  G ++ +    D   + PKGFA++ F+  
Sbjct: 394 EEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453

Query: 474 E-AIQEAVKLSESELHGRQIKVAP 542
           E A++   ++      GR + V P
Sbjct: 454 EHAVKAYSEVDGQVFQGRMLHVLP 477



 Score = 37.7 bits (86), Expect = 0.022
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ----PKGFAYVEF 464
           E +E +   ++F+ N+++  T E++++ F+  GTV   +I   K         GF +VE+
Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEY 781

Query: 465 VEAEAIQEAVKLSESEL---HGRQIKVAPKRT 551
            + E  Q+A+K  +  +   H  +++++ + T
Sbjct: 782 RKPEQAQKALKQLQGHVVDGHKLEVRISERAT 813

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +VF+ N+D A   + +   F++ G +    + TD+ G  KG+ +V F   EA   ++ K+
Sbjct: 91  NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150

Query: 501 SESELHGRQIKV 536
           +   L+G+++ V
Sbjct: 151 NGMLLNGKKVYV 162



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     + ++  F+  G +    ++TD+ G+ KGF +V F  A     AV   
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAV--- 344

Query: 504 ESELHGRQIKVAP 542
            +EL+GR +   P
Sbjct: 345 -TELNGRVVGSKP 356

---

>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA-EAIQEAVKL 500
           ++FV N+D+    +++++ F+  GTV R  I  DK G+ +G   V F +A EA+Q     
Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293

Query: 501 SESELHGRQIKV 536
           +   L  R + V
Sbjct: 294 NGQFLFDRPMHV 305



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = +3

Query: 294 SEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 467
           S  +E + S+   +FV N+ +  T +++++ F+ CG V    I  +  G+ KG   V F 
Sbjct: 512 SGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFD 570

Query: 468 EAEAIQEAVKLSES-ELHGRQIKV 536
             E+ ++A ++    ++ GR+I V
Sbjct: 571 SPESAEKACRIMNGIKISGREIDV 594

---

>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP--KGFAYVEFVEAEAIQEAVK 497
           + F+GN+ Y  T E +++ F     ++ V +  +       KGF Y EF + +++  A+ 
Sbjct: 97  TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 155

Query: 498 LSESELHGRQIKV 536
           L+E  L  R+I+V
Sbjct: 156 LNEESLGNRRIRV 168

---

>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVKL 500
           +V+VGN+D   T E++ + F     V R+    DK  Q  +G+A++EF      Q A+K+
Sbjct: 10  TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69

Query: 501 SES--ELHGRQIKV 536
             +   L+ R IKV
Sbjct: 70  MNNTVRLYDRLIKV 83

---

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA-EAIQEAVKL 500
           ++FV N+D+    +++++ F+  GTV R  I  DK G+ +G   V F +A EA+Q     
Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284

Query: 501 SESELHGRQIKV 536
           +   L  R + V
Sbjct: 285 NGQFLFDRPMHV 296



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +FV N+ +  T +++++ F+ CG V    I  +  G+ KG   V F  AE+ ++A ++  
Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAESAEKACRIMN 574

Query: 507 S-ELHGRQIKV 536
             ++ GR+I V
Sbjct: 575 GIKISGREIDV 585

---

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           + + V+VGN+      +EV+  F+  G +  V I   K G+   FA+VEF +    ++AV
Sbjct: 7   EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAV 63

Query: 495 KLSES-ELHGRQIKV 536
           +  +  E  GR+I+V
Sbjct: 64  RARDGYEFDGRRIRV 78

---

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = +3

Query: 333 VGNVDYACTPEEVQQHFNSCGTVNRVTI--LTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           VGN+ +  T  ++   F    T  R+ I  LT++    +GF YVEF  A+ +  A+ LS 
Sbjct: 98  VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTER---SRGFGYVEFETADTLSAALALSG 154

Query: 507 SELHGRQIKVA---PKRT 551
            +L GR +++    P+R+
Sbjct: 155 EDLMGRPVRITVAEPRRS 172

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE-AEAIQEAVKLS 503
           +F+G ++     + ++  F   G ++ V ++ D+  + +GFA++ F   A+A   A  ++
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69

Query: 504 ESELHGRQIKV 536
              LHG+ IKV
Sbjct: 70  GKSLHGKAIKV 80

---

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 300 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 476
           ++++     +FVG + Y  T   ++++F   G +    ++TD+  G+ +G+ +V   +  
Sbjct: 25  SRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 84

Query: 477 AIQEAVKLSESELHGRQIKV 536
           A   A K     + GR+  V
Sbjct: 85  AADRACKDPNPIIDGRKANV 104

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +3

Query: 330 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-LS 503
           FVG + +A + E ++  F S G +    ++TD+  G+ +GF +V F    ++ +A++ ++
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 504 ESELHGRQIKV 536
             EL GR I V
Sbjct: 71  GKELDGRNITV 81

---

>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein|
          Length = 348

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-----PKGFAYVEFVE 470
           ++ D   VFVG +  +    E++  F + GTV +VTI   +  +     P G A+V F  
Sbjct: 39  QQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98

Query: 471 AEAIQEAVK-LSESELHGRQIKVAPKR 548
            E + +A++ L+   L  R+I V   R
Sbjct: 99  QEDVDKAIETLNGKTLDDREIVVQKAR 125

---

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E +   +++V N+    T +++   F   G + +  IL DK  G+P+G A+V F + E  
Sbjct: 191 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEA 250

Query: 483 QEAV 494
           QEA+
Sbjct: 251 QEAI 254



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 357 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 530
           T  E+   F + G +N   I+ D K G   G+A+V+F      Q A+K L+   +  +++
Sbjct: 122 TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRL 181

Query: 531 KVAPKR 548
           KV+  R
Sbjct: 182 KVSYAR 187

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 434
           ++++ GD      E +       +FVGN+ ++     + + F   G V  V ++ DK  G
Sbjct: 68  EDVEDGDEGV--EEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTG 125

Query: 435 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 536
           + +GF +V     E ++ A  + +  EL GR ++V
Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160

---

>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 464
           +++G++  +    ++Q++FN  GTV R+ +  + K G  KG+AYVE+
Sbjct: 43  IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89

---

>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++++F   G ++ + I+TDK  G+ +GFA+V F + + + + V 
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVL 159

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 160 QKYHTINGHNAEV 172



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEFVEAEA 479
           +E+   R +F+G + +  T E ++ ++   GT+    ++ D    + +GF +V F     
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNE 62

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
           +  A+      + GR ++  PKR
Sbjct: 63  VDAAMATRPHTIDGRVVE--PKR 83

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 494
           SR V++G++ Y  T E++    ++ G V  + ++ D + G+ KG+A++EF + E+   AV
Sbjct: 17  SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76

Query: 495 K-LSESELHGRQIK 533
           + L+  +L  R +K
Sbjct: 77  RNLNGYQLGSRFLK 90

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E +++ F   G    V ++TD  G+ +GF +V F   E  Q+AV  +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251

Query: 501 SESELHGRQIKV 536
           +  +L+G+ I V
Sbjct: 252 NGKDLNGKAIFV 263

---

>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +3

Query: 312 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 491
           +D RS+FVG +D   T EE+ + F++ G +  + ++   F     FA++++   EA   A
Sbjct: 343 IDKRSIFVGQLDKETTREELNRRFSTHGKIQDINLI---FKPTNIFAFIKYETEEAAAAA 399

Query: 492 VKLSESELH 518
           +   ESE H
Sbjct: 400 L---ESENH 405

---

>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = +3

Query: 243 QAKVAKEMQGGDPNATTSEA--KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 416
           QAK  K +  GD   + S+   KEE + R+V VG +    T ++++  F     V  VTI
Sbjct: 231 QAK-PKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTI 289

Query: 417 LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
            +++   P+  A+V     + I +A+KL  +EL  R I V
Sbjct: 290 SSNRL-MPR--AFVRLASVDDIPKALKLHSTELFSRFITV 326

---

>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +3

Query: 285 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSC-GTVNRVTILTDKFGQPKGFAYVE 461
           A T  AK E   R+V+VGN+       EV + FN   G V    + +     P  +AYVE
Sbjct: 151 ADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVE 210

Query: 462 FVEAEAIQEAVKLSESELHGRQIKVAPKR 548
           F +  ++  A++    E   R +K+   R
Sbjct: 211 FSQQASVCNALQNDGFEFKERPLKIQHSR 239

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E +   +++V N+    T +++   F   G++ +  IL DK  G+P+G A+V + + E  
Sbjct: 208 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 267

Query: 483 QEAV 494
           QEA+
Sbjct: 268 QEAI 271



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAI 482
           +   + ++ V  +    T  E+   F + G +N   I+ D K G   G+A+V+F      
Sbjct: 122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 181

Query: 483 QEAVK-LSESELHGRQIKVAPKR 548
           Q A+K L+   +  +++KV+  R
Sbjct: 182 QRAIKVLNGITVRNKRLKVSYAR 204

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E +   +++V N+    T +++   F   G++ +  IL DK  G+P+G A+V + + E  
Sbjct: 206 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 265

Query: 483 QEAV 494
           QEA+
Sbjct: 266 QEAI 269



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 357 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 530
           T  E+   F + G +N   I+ D K G   G+A+V+F      Q A+K L+   +  +++
Sbjct: 137 TDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 196

Query: 531 KVAPKR 548
           KV+  R
Sbjct: 197 KVSYAR 202

---

>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 434
           KE+Q G  +   S   E  D+  +++GN++   T  ++   F+  G    V +  D+  G
Sbjct: 10  KELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69

Query: 435 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV-----APKRT 551
           + +GFAY+++ +  +   AV  L+  ++ GR +K+      PKR+
Sbjct: 70  ESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRS 114

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 500
           +V++ N       E +++ F   G    V ++TD  G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 501 SESELHGRQIKV 536
           +  +++G+ + V
Sbjct: 252 NGKDMNGKSMFV 263

---

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 494
           ++ +FVG +      E+V+Q+F   G V    ++ DK   + +GF +V F   + +++  
Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168

Query: 495 KLSESELHGRQI---KVAPK 545
           ++   E++ + +   K  PK
Sbjct: 169 EIHFHEINNKMVECKKAQPK 188

---

>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (Neural-specific SR pro
          Length = 262

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 497
           S+FV NV      E++++ F   G +  V +  D + + P+GFAYV+F +    ++A+  
Sbjct: 11  SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70

Query: 498 LSESELHGRQIKV 536
           L    + GRQI++
Sbjct: 71  LDRKWICGRQIEI 83

---

>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (40 kDa SR-repressor pr
          Length = 262

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 497
           S+FV NV      E++++ F   G +  V +  D + + P+GFAYV+F +    ++A+  
Sbjct: 11  SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70

Query: 498 LSESELHGRQIKV 536
           L    + GRQI++
Sbjct: 71  LDRKWICGRQIEI 83

---

>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 503
           V+VGN+      ++++  F   G +N V I  +    P GFA+VEF   +  ++A   L+
Sbjct: 9   VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN----PPGFAFVEFEHRDDAEKACDILN 64

Query: 504 ESELHGRQIKV 536
            SEL G Q++V
Sbjct: 65  GSELLGSQLRV 75

---

>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCG-TVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 500
           + F+GN+ Y  T + ++  F     +  R+        + KGF Y EF + +++  A+ L
Sbjct: 97  TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156

Query: 501 SESELHGRQIKV 536
           +E  L  R+I+V
Sbjct: 157 NEESLGNRRIRV 168

---

>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (DXS8237E)
          Length = 929

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +3

Query: 267 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR-VTILTDKF-GQP 440
           QG +      E +EE  S  V +  +  A T ++++    S G   R V ++ +K  GQ 
Sbjct: 111 QGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS 170

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQI 530
           +GFA+VEF     +Q+A +  E+  H   I
Sbjct: 171 RGFAFVEF---SHLQDATRWMEANQHSLNI 197

---

>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12|
          Length = 462

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQ 485
           + R++FVGN+D+    E + ++FNS     V  V ++ D K    KGFA V+F +  ++ 
Sbjct: 264 NKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSVN 323

Query: 486 EAVKLSESEL 515
           +++ L++  +
Sbjct: 324 KSLLLNDKPM 333

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +3

Query: 282 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYV 458
           N  T +  ++     VF+G +    T  +++  FN  G V  V I+ D+  +  +GF ++
Sbjct: 83  NPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFL 142

Query: 459 EFVEAEAIQEAVKLSESELHGRQIKV 536
            F E  +++         L+G+Q+++
Sbjct: 143 SFEEESSVEHVTNERYINLNGKQVEI 168

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 476
           +AK       + + N+ + C+ ++++  F   GTV  V I     G+ +GFA+V+F    
Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLL 164

Query: 477 AIQEAVK-LSESELHGRQIKV 536
              +A+K  +  E+ GR + V
Sbjct: 165 EAGKALKGANMKEIKGRTVAV 185



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVK 497
           ++FVG +  +   +++++ F+  G V +  ++T+K  +  +GF YV F   E +Q A+K
Sbjct: 4   TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62

---

>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 464
           +++G++  A    +++++F+  GTV R+ +  + K G  KG+AYVEF
Sbjct: 43  IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89

---

>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/92 (27%), Positives = 44/92 (47%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           E++ G            +++  +FVGNV  ACT +E++  F   G V    ++ D     
Sbjct: 59  ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             F ++E  EA+A     +L+  E+ G++I V
Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 327 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGALRAIE-- 53

Query: 504 ESELHGRQIK 533
              LHG +++
Sbjct: 54  --ALHGHELR 61

---

>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/92 (27%), Positives = 44/92 (47%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           E++ G            +++  +FVGNV  ACT +E++  F   G V    ++ D     
Sbjct: 59  ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             F ++E  EA+A     +L+  E+ G++I V
Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 327 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGAVRAIE-- 53

Query: 504 ESELHGRQIK 533
              LHG +++
Sbjct: 54  --ALHGHELR 61

---

>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/92 (27%), Positives = 44/92 (47%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           E++ G            +++  +FVGNV  ACT +E++  F   G V    ++ D     
Sbjct: 59  ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             F ++E  EA+A     +L+  E+ G++I V
Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 327 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGALRAIE-- 53

Query: 504 ESELHGRQIK 533
              LHG +++
Sbjct: 54  --ALHGHELR 61

---

>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/92 (27%), Positives = 44/92 (47%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           E++ G            +++  +FVGNV  ACT +E++  F   G V    ++ D     
Sbjct: 59  ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
             F ++E  EA+A     +L+  E+ G++I V
Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 327 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGAVRAIE-- 53

Query: 504 ESELHGRQIK 533
              LHG +++
Sbjct: 54  --ALHGHELR 61

---

>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 300 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 479
           A  E+    + V N+ +  T E+V+  F   G +  V +  D   + KGF Y+++    +
Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392

Query: 480 IQEAV-KLSESELHGRQIKV 536
            + A+ K++  +L GR ++V
Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412

---

>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 564

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 485
           ++  +R++F+GN+D++ +  E+++ F   G +  V I     GQ   +A+++F   +   
Sbjct: 5   DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAH 64

Query: 486 EAVKLSESELHGR 524
            A       + GR
Sbjct: 65  RAKVAMSGRVIGR 77

---

>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 485
           ++  +R++F+GN+D++ +  E+++ F   G +  V I     GQ   +A+++F   +   
Sbjct: 5   DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAH 64

Query: 486 EAVKLSESELHGR 524
            A       + GR
Sbjct: 65  RAKVAMSGRVIGR 77

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = +3

Query: 273 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           G+      + K+E  +R    +++V N+D     + +++ F+  GT+    ++T+  G  
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHS 332

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
           KGF +V F   E   +AV    +E++GR +   P
Sbjct: 333 KGFGFVCFSSPEEATKAV----TEMNGRIVSTKP 362



 Score = 30.0 bits (66), Expect = 4.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           +VF+ N+D +   + +   F++ G +    ++ D+ G  +G+ +V F   EA   A++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRAIQ 156

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = +3

Query: 273 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           G+      + K+E  +R    +++V N+D     + +++ F+  GT+    ++T+  G  
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHS 332

Query: 441 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
           KGF +V F   E   +AV    +E++GR +   P
Sbjct: 333 KGFGFVCFSSPEEATKAV----TEMNGRIVSTKP 362



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           +VF+ N+D +   + +   F++ G +    ++ D++G  +G+ +V F   EA   A++
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQ 156

---

>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
 Frame = +3

Query: 276 DPNATT-------------SEAKEEMDSRSVFVGNVD-YACTPEEVQQHFNSCGTVNRVT 413
           DPN TT               +K +   R+V+VGN++    T +++ + F   G V  V 
Sbjct: 41  DPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVR 100

Query: 414 ILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
           +  D+  QP  FA+VEF +  ++  A+  +      R +K+
Sbjct: 101 MAGDET-QPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +3

Query: 294 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVE 470
           +E  E  +   +FVGN+ Y    + +   F   GTV    ++ ++   Q +GF +V    
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200

Query: 471 AEAIQEAV-KLSESELHGRQI---KVAPK 545
            +  + AV K +  +L+GR +   K AP+
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPR 229



 Score = 36.2 bits (82), Expect = 0.063
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-L 500
           V+VGN+ +      ++Q F+  G V    ++ D+  G+ +GF +V   + + + EA+  L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305

Query: 501 SESELHGRQIKV 536
               L GR I+V
Sbjct: 306 DGQNLEGRAIRV 317

---

>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEFVEAEA 479
           SR ++VGN+ + C  E +   FN     CG        IL  +    K FA++EF   + 
Sbjct: 183 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDE 242

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
               +        G+Q+KV   R
Sbjct: 243 TTAGMAFDGINFMGQQLKVRRPR 265



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           +  +F+G +    T ++V++   S G +   ++  D  G  KG+A+ E+++     +A+ 
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 349

Query: 498 -LSESELHGRQIKV 536
            L+  +L  +Q+ V
Sbjct: 350 GLNGMQLGDKQLVV 363

---

>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112

Query: 441 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
             +A+V    AE   EA++ L  +E  G+++ V
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVK 497
           ++FVG +  +   E++++ F+  G V +  ++T+K  +  +GF YV F   E +Q A+K
Sbjct: 4   TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 297 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 476
           +AK       + + N+ + C+ ++++  F   G V  V I     G+ +GF +V+F    
Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLL 164

Query: 477 AIQEAVK-LSESELHGRQIKV 536
              +A+K ++  E+ GR + V
Sbjct: 165 EAGKALKGMNMKEIKGRTVAV 185

---

>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEFVEAEA 479
           +R ++VGN+ +  T E +   FN+   +  +T      +L  +  Q K FA++EF   + 
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207

Query: 480 IQEAVKLSESELHGRQIKV 536
             +A+        G+ +K+
Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAV 494
           +  +F+G +      ++V++   S G +    ++ D   G  KG+A+ E+V+     +A+
Sbjct: 258 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 317

Query: 495 KLSESELHGRQI 530
               + L+G Q+
Sbjct: 318 ----AGLNGMQL 325

---

>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEFVEAEA 479
           +R ++VGN+ +  T E +   FN+   +  +T      +L  +  Q K FA++EF   + 
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207

Query: 480 IQEAVKLSESELHGRQIKV 536
             +A+        G+ +K+
Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAV 494
           +  +F+G +      ++V++   S G +    ++ D   G  KG+A+ E+V+     +A+
Sbjct: 258 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 317

Query: 495 KLSESELHGRQI 530
               + L+G Q+
Sbjct: 318 ----AGLNGMQL 325

---

>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           SR+V+VGN+       EV+  F+  G V ++ +      +P G+A+VEF +A   ++A+ 
Sbjct: 6   SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAI- 62

Query: 498 LSESELHGR 524
                 HGR
Sbjct: 63  ------HGR 65

---

>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 491
           ++R ++VGN+      E++ +HF   G V  V IL  +  +    A+V+FV+ ++ Q+A
Sbjct: 4   ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62

---

>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           V V  + ++C+ +EVQ+ F+ C   N    +  +  + G+P G A+VE    + ++ A+K
Sbjct: 12  VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71

Query: 498 LSESELHGRQIKV 536
                +  R ++V
Sbjct: 72  KDRETMGHRYVEV 84

---

>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           V V  + ++C+ +EVQ+ F+ C   N    +  +  + G+P G A+VE    + ++ A+K
Sbjct: 12  VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71

Query: 498 LSESELHGRQIKV 536
                +  R ++V
Sbjct: 72  KDRETMGHRYVEV 84

---

>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVD-YACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           R+V+VGN++    T +++ + F   G V  V +  D+  QP  FA+VEF +  ++  A+ 
Sbjct: 69  RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 127

Query: 498 LSESELHGRQIKV 536
            +      R +K+
Sbjct: 128 FNGVMFGDRPLKI 140

---

>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVD-YACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           R+V+VGN++    T +++ + F   G V  V +  D+  QP  FA+VEF +  ++  A+ 
Sbjct: 66  RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 124

Query: 498 LSESELHGRQIKV 536
            +      R +K+
Sbjct: 125 FNGVMFGDRPLKI 137

---

>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)|
          Length = 447

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 YACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVKLSESELHGR 524
           Y+C  +++   F     V+ +T + D  G+ K G AYV+F E E   +A+     E+  R
Sbjct: 226 YSCNEKDIVDFFAGLNIVD-ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 284

Query: 525 QIKVAPKR 548
            I++ P R
Sbjct: 285 YIEIFPSR 292

---

>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 303 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 479
           +   D  +  V N+      +E++  F   G V R+ I  DK  G PKGFA+V F   + 
Sbjct: 170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229

Query: 480 IQEAV-KLSESELHGRQIKV 536
              A+ +L++  ++   +KV
Sbjct: 230 AARAIAELNDIRMYHMVLKV 249

---

>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +3

Query: 315 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 491
           ++R ++VGN+      E++ +HF   G V  V IL  +  +    A+V+FV+ ++ Q+A
Sbjct: 4   ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62

---

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +3

Query: 252 VAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 428
           VA+E + G P A  +  K       +FVG +        ++ +F   G ++ + I+TD+ 
Sbjct: 97  VARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 148

Query: 429 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
            G+ +GF +V F + + + + V      ++G   +V
Sbjct: 149 SGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 184

---

>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)|
          Length = 479

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 YACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVKLSESELHGR 524
           Y+C  +++   F     V+ +T + D  G+ K G AYV+F E E   +A+     E+  R
Sbjct: 258 YSCNEKDIVDFFAGLNIVD-ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 316

Query: 525 QIKVAPKR 548
            I++ P R
Sbjct: 317 YIEIFPSR 324

---

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +3

Query: 252 VAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 428
           VA+E + G P A  +  K       +FVG +        ++ +F   G ++ + I+TD+ 
Sbjct: 85  VARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136

Query: 429 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
            G+ +GF +V F + + + + V      ++G   +V
Sbjct: 137 SGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 172

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
 Frame = +3

Query: 261 EMQGGDPNATTSEAKEEMDSRS-----VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 425
           +M    P      AK+  D+ S     +F+GN+ +    + + + F   G V  V I T 
Sbjct: 242 DMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTH 301

Query: 426 -KFGQPKGFAYVEFVEAEAIQEAVKLSESE 512
            +  QPKGF YV+F   E  ++A+   + E
Sbjct: 302 PETEQPKGFGYVQFSNMEDAKKALDALQGE 331

---

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 497
           + +FVG +        ++++F   G +    I+TDK  G+ +GF +V F + + + + V 
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVL 159

Query: 498 LSESELHGRQIKV 536
                ++G   +V
Sbjct: 160 QKYHTINGHNAEV 172

---

>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +3

Query: 276 DPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 452
           D NA    +   +DS + +F+G +    T ++V++   S G +   ++  D  G  KG+A
Sbjct: 266 DMNARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 325

Query: 453 YVEFVEAEAIQEAVK-LSESELHGRQIKV 536
           + E+++     +A+  L+  +L  +Q+ V
Sbjct: 326 FAEYLDPTLTDQAIAGLNGMQLGDKQLVV 354



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEFVEAEA 479
           SR ++VGN+ + C  E +   FN     C         IL  +    K FA++EF   + 
Sbjct: 174 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDE 233

Query: 480 IQEAVKLSESELHGRQIKVAPKR 548
               +        G+Q+KV   R
Sbjct: 234 TTAGMAFDGINFMGQQLKVRRPR 256

---

>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFN------SCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 479
           +R ++VGN+ +  T EE+ + FN               +L  +    K FA++EF   + 
Sbjct: 92  ARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDE 151

Query: 480 IQEAVKLSESELHGRQIKV 536
             +A+      L G+ +K+
Sbjct: 152 TTQAMAFDGINLKGQSLKI 170

---

>G3BP_SCHPO (O94260) Putative G3BP-like protein|
          Length = 434

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 23/94 (24%), Positives = 46/94 (48%)
 Frame = +3

Query: 267 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 446
           Q   P A  +++ E +++ SVFV N+    +   ++   +  G V  +     +F + KG
Sbjct: 298 QTQQPTAPYTQSNELLET-SVFVKNIPPETSDVSLKSAMSIFGPVKAI-----EFARRKG 351

Query: 447 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 548
            AYV+FV  E +Q A+     +++   + +  +R
Sbjct: 352 TAYVDFVNHECVQLALNKKTLQINNATLNIEERR 385

---

>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = +3

Query: 312 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 491
           MD++ V+VG +    T +E+++ F+  G + +V +      +P GFA+VE+ +    ++A
Sbjct: 1   MDAK-VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR----RPPGFAFVEYDDVRDAEDA 55

Query: 492 VK-LSESELHGRQIKV 536
           V+ L  S + G + +V
Sbjct: 56  VRALDGSRICGVRARV 71

---

>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
          Length = 449

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           V V  + ++C+ EEV + F+ C   N    V  +  + G+P G A+VE    + ++ A+K
Sbjct: 13  VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72

Query: 498 LSESELHGRQIKV 536
                +  R ++V
Sbjct: 73  KDRETMGHRYVEV 85

---

>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAV-KL 500
           V+VG++ +    + ++  F   G +  + +  D   Q  KGFA+VE+   E  Q A+ ++
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191

Query: 501 SESELHGRQIKV 536
           + + + GR IKV
Sbjct: 192 NGALMGGRNIKV 203

---

>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein
           homolog)
          Length = 247

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
 Frame = +3

Query: 273 GDPNATTSEAKEEMDSR---SVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL----TDKF 431
           G      S +++E+ +    + +VGN+ +     ++   F    ++  V ++    TDKF
Sbjct: 22  GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKF 80

Query: 432 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
              KGF YVEF E ++++EA+    + L  R ++V
Sbjct: 81  ---KGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 112

---

>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein)
          Length = 247

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
 Frame = +3

Query: 273 GDPNATTSEAKEEMDSR---SVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL----TDKF 431
           G      S +++E+ +    + +VGN+ +     ++   F    ++  V ++    TDKF
Sbjct: 22  GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKF 80

Query: 432 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 536
              KGF YVEF E ++++EA+    + L  R ++V
Sbjct: 81  ---KGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 112

---

>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
           (FTP-3)
          Length = 449

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           V V  + ++C+ +EV + F+ C   N    +  +  + G+P G A+VE    E ++ A+K
Sbjct: 13  VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72

Query: 498 LSESELHGRQIKV 536
                +  R ++V
Sbjct: 73  KDRETMGHRYVEV 85

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 503
           +++V N+D     + +++ F   GT+    ++T+  G  KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAV--- 350

Query: 504 ESELHGRQIKVAP 542
            +E++GR +   P
Sbjct: 351 -TEMNGRIVSTKP 362



 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +3

Query: 324 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           +VF+ N+D +   + +   F++ G +    ++ D+ G  +G+ +V F   EA   A++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQ 156

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E     +V+VG +D   +   + + F   G V    +  D+  GQ +G+ +VEF+  E  
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 483 QEAVKLSES-ELHGRQIKV 536
             A+K+    +L+G+ I+V
Sbjct: 68  DYAIKIMNMIKLYGKPIRV 86

---

>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 270 GGDPNATTSEAKEEMD---SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 440
           G  P     E   E D   +R++F+GN+D   T  ++++ F+  G +  V I     GQ 
Sbjct: 354 GAAPFREVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQT 413

Query: 441 KGFAYVEF 464
             + +++F
Sbjct: 414 STYGFLKF 421

---

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 503
           + V N+D+  +  ++Q+ F   GT+ +  +  D+ G+  G A V F  +A+A++   + +
Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 166

Query: 504 ESELHGRQIKV 536
              L GR + +
Sbjct: 167 GVPLDGRPMNI 177

---

>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 503
           + V N+D+  +  ++Q+ F   GT+ +  +  D+ G+  G A V F  +A+A++   + +
Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 165

Query: 504 ESELHGRQIKV 536
              L GR + +
Sbjct: 166 GVPLDGRPMNI 176

---

>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 27/95 (28%), Positives = 41/95 (43%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ 437
           + M G  P     E   E+ +  +FV          E+ + F   G +  V IL      
Sbjct: 106 EHMHGRPPMHHRQEG--ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN----- 158

Query: 438 PKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 542
             GFA+VEF EAE+  +A++    E+HG+     P
Sbjct: 159 --GFAFVEFEEAESAAKAIE----EVHGKSFANQP 187

---

>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ--PKGFAYVEFVEAEAIQEAVK- 497
           V +G +    T + + + F++ G +  + +  D++     KG+AYVEF   E  ++A+K 
Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199

Query: 498 LSESELHGRQI 530
           +   ++ G++I
Sbjct: 200 MDGGQIDGQEI 210

---

>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 494
           R ++VG +      + +   F   G +  + I  D +  + +GFA+VEF  AE    A+ 
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 495 KLSESELHGRQIKV 536
            ++ESEL GR I+V
Sbjct: 66  NMNESELFGRTIRV 79

---

>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 321 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 494
           R ++VG +      + +   F   G +  + I  D +  + +GFA+VEF  AE    A+ 
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 495 KLSESELHGRQIKV 536
            ++ESEL GR I+V
Sbjct: 66  NMNESELFGRTIRV 79

---

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 506
           +FVGN+      E + Q F+   ++ +  ++ D+ G+ +GF +V F +++   +A +   
Sbjct: 32  LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91

Query: 507 SELHG-RQIKVA 539
            +  G R +K++
Sbjct: 92  GKYIGSRPVKLS 103

---

>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +3

Query: 258 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 434
           KE+       T  + +E++    V+V ++       ++  +F+  GTV R  +   K  G
Sbjct: 24  KEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTG 83

Query: 435 QPKGFAYVEFVEAEAIQEAVKLSESELHGRQI 530
             KG+A+VEF   +  +   +   + L G ++
Sbjct: 84  NSKGYAFVEFESEDVAKIVAETMNNYLFGERL 115

---

>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 497
           SR+VF+GN+  +   +E+++ F   G +  + IL+      K  A+V F+    I++A+K
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS-----KKNIAFVHFLN---IRDAIK 349

Query: 498 L 500
           +
Sbjct: 350 V 350

---

>RBP1_DROME (Q02427) RNA-binding protein 1|
          Length = 144

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 503
           V+VGN+  + +  E++  F   G +  V +  +    P GFA+VEF +    ++A + L 
Sbjct: 13  VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN----PPGFAFVEFEDRRDAEDATRALD 68

Query: 504 ESELHGRQIKV 536
            +   G +I+V
Sbjct: 69  GTRCCGTRIRV 79

---

>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 441 KGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 536
           +GFA+VEF E E    A+  ++ESE+ GR I+V
Sbjct: 11  RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRV 43

---

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           S S+ V N+    + E +++ F+  G V R  ++ D  G+P G   VEF    A ++A+
Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 207

---

>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           S S+ V N+    + E +++ F+  G V R  ++ D  G+P G   VEF    A ++A+
Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205

---

>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           S S+ V N+    + E +++ F+  G V R  ++ D  G+P G   VEF    A ++A+
Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205

---

>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 318 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 494
           S S+ V N+    + E +++ F+  G V R  ++ D  G+P G   VEF    A ++A+
Sbjct: 152 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 210

---

>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 503
           V+VGN+       E+++ F+  G +  V I  +    P GFA+VEF +    ++AV+ L 
Sbjct: 42  VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 97

Query: 504 ESELHGRQIKV 536
              + G +++V
Sbjct: 98  GKVICGSRVRV 108

---

>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 503
           V+VGN+       E+++ F+  G +  V I  +    P GFA+VEF +    ++AV+ L 
Sbjct: 13  VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 68

Query: 504 ESELHGRQIKV 536
              + G +++V
Sbjct: 69  GKVICGSRVRV 79

---

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +3

Query: 282 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV-TILTD-KFGQPKGFAY 455
           N  ++  K      ++FVGN+D     + +   F++ G + +V  I+ D   G  KGFA+
Sbjct: 87  NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146

Query: 456 VEFVEAEAIQEAVKLSESE-LHGRQIKVA 539
           + F   EA   A++    + L  R I V+
Sbjct: 147 INFASFEASDTALEAMNGQFLCNRAITVS 175



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +3

Query: 306 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 482
           E     +++VG +D   +   + +     G V  V +  D+     +GF +VEF+  E  
Sbjct: 8   ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67

Query: 483 QEAVK-LSESELHGRQIKV 536
             A+K L+  +L+G+ IKV
Sbjct: 68  DYAIKILNMIKLYGKPIKV 86

---

>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2|
          Length = 218

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 327 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 503
           + V N+D+  +  ++Q+ F   GT+ +  +  D+ G+  G A V F   A+A++   +  
Sbjct: 77  LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 136

Query: 504 ESELHGRQIKV 536
              L GR + +
Sbjct: 137 GVPLDGRPMDI 147

---

>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 264 MQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK 443
           + G   N   S+ K +  ++ + VGN+  +CT +E++  F   G V    I+ D      
Sbjct: 60  LNGMAMNVEMSKGKPKTSTK-LHVGNISSSCTNQELRAKFEEYGPVVECDIVKD------ 112

Query: 444 GFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 536
            +A+V     E   EA+  L  +   G+ + V
Sbjct: 113 -YAFVHMERVEDAMEAISGLDNTAFQGKLMSV 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,515,990
Number of Sequences: 219361
Number of extensions: 744927
Number of successful extensions: 2862
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 2674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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