ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYSW_SYNY3 (P74547) Sulfate transport system permease protein cysW 32 2.1
2SYI1_PSEFL (P18330) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is... 31 2.8
3OLF6_CHICK (P37072) Olfactory receptor-like protein COR6 31 2.8
4INAR1_HUMAN (P17181) Interferon-alpha/beta receptor alpha chain ... 30 6.2

>CYSW_SYNY3 (P74547) Sulfate transport system permease protein cysW|
          Length = 276

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 379 FLVQEIQPVIMSLLPLKEAARTSIVSKSWRMLWR 278
           F+ +E+ PV+  L P +E A  ++ +K W++ WR
Sbjct: 154 FVAREVIPVLEELGPEQEEAARTLGAKDWQIFWR 187



to top

>SYI1_PSEFL (P18330) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1) (IleRS-R1)
          Length = 943

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = -3

Query: 385 GHFLVQEIQPVIMSLLPLKEAARTSIVSKSWRMLWRFHCNLCFXXXXXXXXXXXDEFTHR 206
           G F+ +  QP+I  L  +    +T+ +  S+   WR    L +            E T  
Sbjct: 371 GQFIFKADQPIIEKLREVGALMQTAAIQHSYMHCWRHKTPLIYRATAQWFIGMDKEPTSG 430

Query: 205 DSTKIKQAKFIETVNCV 155
           D+ +++  K IE    V
Sbjct: 431 DTLRVRSLKAIEDTKFV 447



to top

>OLF6_CHICK (P37072) Olfactory receptor-like protein COR6|
          Length = 312

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +2

Query: 128 DS*PTMMLNNTIYSLNELCLFYFGTIPMSKLIVSVRIHIVAAVKT*ITMESPE 286
           D+ P   ++++  +LNEL +F FG++ +   I+++ I  V  + T + + S E
Sbjct: 180 DNSPLFQISSSSTALNELLVFIFGSLFVMSSIITILISYVFIILTVVRIRSKE 232



to top

>INAR1_HUMAN (P17181) Interferon-alpha/beta receptor alpha chain precursor|
           (IFN-alpha-REC)
          Length = 557

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
 Frame = -3

Query: 505 IKNTYSLHLLEFLFEIYALSPYCVYRWKLVIVKFNSPKYFGHFLVQEIQPVIMSLLPLKE 326
           I+N YS H      +IY LSP   Y  K+      S K   +  V  I+  + + LP  E
Sbjct: 180 IENIYSRH------KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPE 233

Query: 325 AARTSIVSKSWRMLWRF-HCNLCFXXXXXXXXXXXDEFTHRDSTK-IKQAKFIETVNCV 155
               S+ ++++ + W + + N+ F           +   H    K I   + ++T  CV
Sbjct: 234 NIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCV 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,874,547
Number of Sequences: 219361
Number of extensions: 1634235
Number of successful extensions: 2983
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2982
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top