| Clone Name | bags14n10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071E20, full insert sequence Length = 1236 Score = 640 bits (323), Expect = e-180 Identities = 514/577 (89%), Gaps = 3/577 (0%) Strand = Plus / Plus Query: 21 cgatgtcgtccctcaactcgctcttcaaccgctcctcccccttcggcaccaaatgcaaaa 80 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct: 75 cgatgtcgtccctcaactcgctcttcaaccgctccacc---ttcggtaccaaatgcaaaa 131 Query: 81 catgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggagatgcaac 140 ||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||| | Sbjct: 132 catgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagttgcagc 191 Query: 141 tgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtctattgcga 200 | |||||||||||||||||||||||||| ||||||||||| |||||||| || || || | Sbjct: 192 taataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcgatagcaa 251 Query: 201 ggattcgggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttg 260 |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 252 ggattcgggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttg 311 Query: 261 agcttttctgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgcc 320 ||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||| Sbjct: 312 agcttttctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgcc 371 Query: 321 ccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagact 380 |||| ||| | || || ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 372 ccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatgttcagact 431 Query: 381 tgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttg 440 |||||||||| ||||||||||||| |||||| |||||||| ||||| || || ||||||| Sbjct: 432 tgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttg 491 Query: 441 ctgctgctatggaattgcgccctgattgtggtgttaatcgcactataattgagaagcttt 500 |||| |||||||||||||| ||||| | ||||||||||| || ||||| |||||||| | Sbjct: 492 ctgcagctatggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctct 551 Query: 501 cagttaaggctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagt 560 |||| ||||| |||||||| ||||||||| |||||||| |||||||||||||||| |||| Sbjct: 552 cagtgaaggccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagt 611 Query: 561 acaatcttgattgggattcatctaataccgaagcaga 597 | ||||| ||||| ||||| ||||| |||||||| Sbjct: 612 atggccttgaatgggactcatcgaatactgaagcaga 648
>dbj|AK061158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H01, full insert sequence Length = 1162 Score = 640 bits (323), Expect = e-180 Identities = 514/577 (89%), Gaps = 3/577 (0%) Strand = Plus / Plus Query: 21 cgatgtcgtccctcaactcgctcttcaaccgctcctcccccttcggcaccaaatgcaaaa 80 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct: 72 cgatgtcgtccctcaactcgctcttcaaccgctccacc---ttcggtaccaaatgcaaaa 128 Query: 81 catgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggagatgcaac 140 ||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||| | Sbjct: 129 catgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagttgcagc 188 Query: 141 tgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtctattgcga 200 | |||||||||||||||||||||||||| ||||||||||| |||||||| || || || | Sbjct: 189 taataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcgatagcaa 248 Query: 201 ggattcgggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttg 260 |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 249 ggattcgggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttg 308 Query: 261 agcttttctgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgcc 320 ||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||| Sbjct: 309 agcttttctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgcc 368 Query: 321 ccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagact 380 |||| ||| | || || ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 369 ccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatgttcagact 428 Query: 381 tgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttg 440 |||||||||| ||||||||||||| |||||| |||||||| ||||| || || ||||||| Sbjct: 429 tgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttg 488 Query: 441 ctgctgctatggaattgcgccctgattgtggtgttaatcgcactataattgagaagcttt 500 |||| |||||||||||||| ||||| | ||||||||||| || ||||| |||||||| | Sbjct: 489 ctgcagctatggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctct 548 Query: 501 cagttaaggctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagt 560 |||| ||||| |||||||| ||||||||| |||||||| |||||||||||||||| |||| Sbjct: 549 cagtgaaggccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagt 608 Query: 561 acaatcttgattgggattcatctaataccgaagcaga 597 | ||||| ||||| ||||| ||||| |||||||| Sbjct: 609 atggccttgaatgggactcatcgaatactgaagcaga 645
>ref|NM_192107.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 414 bits (209), Expect = e-112 Identities = 344/389 (88%) Strand = Plus / Plus Query: 209 gtggagcatattattcgggagcaaaatatattggctgcctatgagattgttgagcttttc 268 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 139 gtggagcacattattcgagagcaaaatatattggctgcatatgagattgttgagcttttc 198 Query: 269 tgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgccccttagaa 328 ||||||||||| |||||| | |||||||||||||||| |||||||||||||||||| ||| Sbjct: 199 tgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgccccttcgaa 258 Query: 329 ttgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagacttgcctgag 388 | || || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct: 259 ctacgggaagcaatagctagtataatatttgcatcagggagatgttcagacttgcctgag 318 Query: 389 ctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttgctgctgct 448 || ||||||||||||| |||||| |||||||| ||||| || || ||||||||||| ||| Sbjct: 319 ctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttgctgcagct 378 Query: 449 atggaattgcgccctgattgtggtgttaatcgcactataattgagaagctttcagttaag 508 ||||||||||| ||||| | ||||||||||| || ||||| |||||||| ||||| ||| Sbjct: 379 atggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctctcagtgaag 438 Query: 509 gctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagtacaatctt 568 || |||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||| Sbjct: 439 gccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagtatggcctt 498 Query: 569 gattgggattcatctaataccgaagcaga 597 || ||||| ||||| ||||| |||||||| Sbjct: 499 gaatgggactcatcgaatactgaagcaga 527 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 23 atgtcgtccctcaactcgctcttcaaccgctcc 55 ||||||||||||||||||||||||||||||||| Sbjct: 1 atgtcgtccctcaactcgctcttcaaccgctcc 33
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 313 ggaatgccccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatg 372 |||||||||||| ||| | || || ||||||||||||||||| ||||||||||| ||||| Sbjct: 28365945 ggaatgccccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatg 28365886 Query: 373 ctcagacttgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaaga 432 ||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || || Sbjct: 28365885 ttcagacttgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaagga 28365826 Query: 433 gtttgttgctgctgctatggaattgcgccctgattgtggtgttaatcg 480 ||||||||||| |||||||||||||| ||||| | ||||||||||| Sbjct: 28365825 atttgttgctgcagctatggaattgcgtcctgacagcggtgttaatcg 28365778 Score = 167 bits (84), Expect = 5e-38 Identities = 123/136 (90%) Strand = Plus / Minus Query: 75 gcaaaacatgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggaga 134 ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 28366932 gcaaaacatgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagt 28366873 Query: 135 tgcaactgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtcta 194 |||| || |||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 28366872 tgcagctaataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcga 28366813 Query: 195 ttgcgaggattcgggt 210 | || ||||||||||| Sbjct: 28366812 tagcaaggattcgggt 28366797 Score = 155 bits (78), Expect = 2e-34 Identities = 99/106 (93%) Strand = Plus / Minus Query: 208 ggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttgagctttt 267 ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 28366177 ggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttgagctttt 28366118 Query: 268 ctgcgaatttgttctggcacgagtccctattgttgaggcccaaaag 313 |||||||||||| |||||| | |||||||||||||||| ||||||| Sbjct: 28366117 ctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaag 28366072 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 485 ataattgagaagctttcagttaaggctccatcagcggaatcaaagttgaaggttttgaaa 544 ||||| |||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||||| Sbjct: 28365645 ataatcgagaagctctcagtgaaggccccatcagctgaatcaaagctgaaggttctgaaa 28365586 Query: 545 gctattgctcatgagtacaatcttgattgggattcatctaataccgaagcaga 597 ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||||| Sbjct: 28365585 gctattgctcaagagtatggccttgaatgggactcatcgaatactgaagcaga 28365533 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 21 cgatgtcgtccctcaactcgctcttcaaccgctcc 55 ||||||||||||||||||||||||||||||||||| Sbjct: 28367693 cgatgtcgtccctcaactcgctcttcaaccgctcc 28367659
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 174 bits (88), Expect = 2e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 313 ggaatgccccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatg 372 |||||||||||| ||| | || || ||||||||||||||||| ||||||||||| ||||| Sbjct: 81045 ggaatgccccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatg 80986 Query: 373 ctcagacttgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaaga 432 ||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || || Sbjct: 80985 ttcagacttgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaagga 80926 Query: 433 gtttgttgctgctgctatggaattgcgccctgattgtggtgttaatcg 480 ||||||||||| |||||||||||||| ||||| | ||||||||||| Sbjct: 80925 atttgttgctgcagctatggaattgcgtcctgacagcggtgttaatcg 80878 Score = 167 bits (84), Expect = 5e-38 Identities = 123/136 (90%) Strand = Plus / Minus Query: 75 gcaaaacatgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggaga 134 ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 82032 gcaaaacatgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagt 81973 Query: 135 tgcaactgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtcta 194 |||| || |||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 81972 tgcagctaataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcga 81913 Query: 195 ttgcgaggattcgggt 210 | || ||||||||||| Sbjct: 81912 tagcaaggattcgggt 81897 Score = 155 bits (78), Expect = 2e-34 Identities = 99/106 (93%) Strand = Plus / Minus Query: 208 ggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttgagctttt 267 ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 81277 ggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttgagctttt 81218 Query: 268 ctgcgaatttgttctggcacgagtccctattgttgaggcccaaaag 313 |||||||||||| |||||| | |||||||||||||||| ||||||| Sbjct: 81217 ctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaag 81172 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 485 ataattgagaagctttcagttaaggctccatcagcggaatcaaagttgaaggttttgaaa 544 ||||| |||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||||| Sbjct: 80745 ataatcgagaagctctcagtgaaggccccatcagctgaatcaaagctgaaggttctgaaa 80686 Query: 545 gctattgctcatgagtacaatcttgattgggattcatctaataccgaagcaga 597 ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||||| Sbjct: 80685 gctattgctcaagagtatggccttgaatgggactcatcgaatactgaagcaga 80633 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 21 cgatgtcgtccctcaactcgctcttcaaccgctcc 55 ||||||||||||||||||||||||||||||||||| Sbjct: 82793 cgatgtcgtccctcaactcgctcttcaaccgctcc 82759
>gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complete sequence Length = 109843 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 368 agatgctcagacttgcctgagct 390 ||||||||||||||||||||||| Sbjct: 90543 agatgctcagacttgcctgagct 90565
>ref|NM_202181.1| Arabidopsis thaliana unknown protein AT1G25420 transcript variant AT1G25420.2 mRNA, complete cds Length = 1421 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 705 gattctggtgtcaatcgtactatcattgagaagctttc 742
>ref|NM_202182.1| Arabidopsis thaliana unknown protein AT1G25420 transcript variant AT1G25420.3 mRNA, complete cds Length = 1299 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 558 gattctggtgtcaatcgtactatcattgagaagctttc 595
>ref|NM_102353.2| Arabidopsis thaliana unknown protein AT1G25420 transcript variant AT1G25420.1 mRNA, complete cds Length = 1305 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 521 gattctggtgtcaatcgtactatcattgagaagctttc 558
>gb|AY143866.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, complete cds Length = 972 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 439 gattctggtgtcaatcgtactatcattgagaagctttc 476
>gb|AY095990.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, complete cds Length = 1082 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 475 gattctggtgtcaatcgtactatcattgagaagctttc 512
>emb|BX817810.1|CNS0AB5Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1296 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 555 gattctggtgtcaatcgtactatcattgagaagctttc 592
>gb|AY088569.1| Arabidopsis thaliana clone 7917 mRNA, complete sequence Length = 1306 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 464 gattgtggtgttaatcgcactataattgagaagctttc 501 |||| |||||| ||||| ||||| |||||||||||||| Sbjct: 521 gattctggtgtcaatcgtactatcattgagaagctttc 558
>ref|XM_480332.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2091 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 gggaaagagtttgttgctgctgcta 449 |||||||||||||||||||| |||| Sbjct: 521 gggaaagagtttgttgctgcagcta 545
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 208 ggtggagcatattattcgggagcaaaatatatt 240 |||||| |||||||||| | ||||||||||||| Sbjct: 1572794 ggtggaacatattattccgaagcaaaatatatt 1572826
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 43 cttcaaccgctcctcccccttcggcacca 71 ||||| ||||||||| ||||||||||||| Sbjct: 190226 cttcacccgctcctcgcccttcggcacca 190198
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 208 ggtggagcatattattcgggagcaaaatatatt 240 |||||| |||||||||| | ||||||||||||| Sbjct: 1546644 ggtggaacatattattccgaagcaaaatatatt 1546676
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 208 ggtggagcatattattcgggagcaaaatatatt 240 |||||| |||||||||| | ||||||||||||| Sbjct: 1546598 ggtggaacatattattccgaagcaaaatatatt 1546630
>gb|AC122271.4| Mus musculus BAC clone RP23-222D3 from 18, complete sequence Length = 199493 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 429 aagagtttgttgctgctgctatgga 453 ||||| ||||||||||||||||||| Sbjct: 71715 aagagcttgttgctgctgctatgga 71739
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 208 ggtggagcatattattcgggagcaaaatatatt 240 |||||| |||||||||| | ||||||||||||| Sbjct: 1571413 ggtggaacatattattccgaagcaaaatatatt 1571445
>gb|AC117524.2| Homo sapiens chromosome 5 clone RP11-114E19, complete sequence Length = 79262 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cggcaccaaatgcaaaacatg 84 ||||||||||||||||||||| Sbjct: 19781 cggcaccaaatgcaaaacatg 19761
>gb|AC018754.6| Homo sapiens chromosome 5 clone CTC-428H11, complete sequence Length = 172056 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cggcaccaaatgcaaaacatg 84 ||||||||||||||||||||| Sbjct: 25590 cggcaccaaatgcaaaacatg 25610
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 gggaaagagtttgttgctgctgcta 449 |||||||||||||||||||| |||| Sbjct: 4381158 gggaaagagtttgttgctgcagcta 4381134 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cgccactgacgatgtcgtcc 31 |||||||||||||||||||| Sbjct: 18064581 cgccactgacgatgtcgtcc 18064562
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cgccactgacgatgtcgtccc 32 ||||||||||||||||||||| Sbjct: 25504502 cgccactgacgatgtcgtccc 25504522
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 gggaaagagtttgttgctgctgcta 449 |||||||||||||||||||| |||| Sbjct: 143952 gggaaagagtttgttgctgcagcta 143928
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_B10 Length = 115074 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 gggaaagagtttgttgctgctgcta 449 |||||||||||||||||||| |||| Sbjct: 28334 gggaaagagtttgttgctgcagcta 28310
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0560B08 Length = 128098 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cgccactgacgatgtcgtccc 32 ||||||||||||||||||||| Sbjct: 41772 cgccactgacgatgtcgtccc 41792
>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0552F09 Length = 134659 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cgccactgacgatgtcgtccc 32 ||||||||||||||||||||| Sbjct: 128219 cgccactgacgatgtcgtccc 128239
>dbj|AK072367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075K04, full insert sequence Length = 2090 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 gggaaagagtttgttgctgctgcta 449 |||||||||||||||||||| |||| Sbjct: 521 gggaaagagtttgttgctgcagcta 545
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 208 ggtggagcatattattcgggagcaaaatatatt 240 |||||| |||||||||| | ||||||||||||| Sbjct: 1546521 ggtggaacatattattccgaagcaaaatatatt 1546553
>ref|NM_120364.1| Arabidopsis thaliana unknown protein AT5G02860 mRNA, complete cds Length = 2460 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tctttgcatcaggaagatgctcag 377 |||||||||||||||| ||||||| Sbjct: 877 tctttgcatcaggaagctgctcag 900
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cgccactgacgatgtcgtcc 31 |||||||||||||||||||| Sbjct: 34539332 cgccactgacgatgtcgtcc 34539313
>ref|XM_661388.1| Cryptosporidium hominis TU502 ZW18 protein (Chro.30014) partial mRNA Length = 3627 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 aatcaaagttgaaggttttg 541 |||||||||||||||||||| Sbjct: 2511 aatcaaagttgaaggttttg 2492
>emb|AL096701.14|HSA247I13 Human DNA sequence from clone RP11-247I13 on chromosome 22 Contains the 5' end of the DRG1 gene for developmentally regulated GTP binding protein 1, the EIF4ENIF1 gene foreukaryotic translation initiation factor 4E nuclear import factor 1, the 5' end of the gene for homolog of yeast Sfi1 (SFI1), a H2A histone family member Z (H2AFZ) pseudogene, a ribosomal protein S26 (RPS260) pseudogene, two novel genes and two CpG islands, complete sequence Length = 168110 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 aggagggagatgcaactgataaat 148 |||||||||||| ||||||||||| Sbjct: 162325 aggagggagatggaactgataaat 162348
>emb|AL033529.25|HS27O5 Human DNA sequence from clone RP1-27O5 on chromosome 1p34.1-35.3 Contains the 3' end of the ZBTB8 gene for zinc finger and BTB domain containing 8, the 3' end of the gene for archease (ARCH) and two CpG islands, complete sequence Length = 147167 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 ggaatcaaagttgaaggttt 539 |||||||||||||||||||| Sbjct: 25642 ggaatcaaagttgaaggttt 25661
>emb|X56779.1|LSYFISP L.stagnalis L. mRNA for Yol Fer gene Length = 1147 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 tatgggaaagagtttgttgc 441 |||||||||||||||||||| Sbjct: 51 tatgggaaagagtttgttgc 70
>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project) Length = 104769 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tctttgcatcaggaagatgctcag 377 |||||||||||||||| ||||||| Sbjct: 50454 tctttgcatcaggaagctgctcag 50477
>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence Length = 183097 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 gagaggcaatagctagtataatctttgc 360 |||||||||||||||| | ||||||||| Sbjct: 158973 gagaggcaatagctaggaaaatctttgc 158946
>emb|CR759739.2| Human DNA sequence from clone XX-NCIH2171_18I22, complete sequence Length = 252905 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 gagaggcaatagctagtataatctttgc 360 |||||||||||||||| | ||||||||| Sbjct: 160327 gagaggcaatagctaggaaaatctttgc 160300
>emb|BX663507.9| Zebrafish DNA sequence from clone DKEY-21N10 in linkage group 2, complete sequence Length = 166609 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ctattgttgaggcccaaaag 313 |||||||||||||||||||| Sbjct: 8606 ctattgttgaggcccaaaag 8587
>gb|AC161624.4| Pan troglodytes BAC clone CH251-149E7 from chromosome unknown, complete sequence Length = 180132 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 aggagggagatgcaactgataaat 148 |||||||||||| ||||||||||| Sbjct: 81322 aggagggagatggaactgataaat 81345
>gb|AC105343.4| Homo sapiens BAC clone RP11-423J7 from 4, complete sequence Length = 155217 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 tcagttaaggctccatcagcggaa 523 ||||||||||||||||||| |||| Sbjct: 87510 tcagttaaggctccatcagaggaa 87533
>ref|XM_625319.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_50), partial mRNA Length = 3627 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 aatcaaagttgaaggttttg 541 |||||||||||||||||||| Sbjct: 2511 aatcaaagttgaaggttttg 2492
>gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, region 34D-34E, BAC clone BACR09N24, complete sequence Length = 158758 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 taattgagaagctttcagtt 505 |||||||||||||||||||| Sbjct: 13319 taattgagaagctttcagtt 13300
>gb|AC092225.1|AC092225 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone BACR18J08, complete sequence Length = 186803 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 taattgagaagctttcagtt 505 |||||||||||||||||||| Sbjct: 158729 taattgagaagctttcagtt 158710
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cgccactgacgatgtcgtcc 31 |||||||||||||||||||| Sbjct: 34629404 cgccactgacgatgtcgtcc 34629385
>gb|AC017101.10| Homo sapiens BAC clone RP11-556A11 from 2, complete sequence Length = 195635 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 aaagttgaaggttttgaaag 545 |||||||||||||||||||| Sbjct: 52742 aaagttgaaggttttgaaag 52761
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cgccactgacgatgtcgtcc 31 |||||||||||||||||||| Sbjct: 104001 cgccactgacgatgtcgtcc 104020
>emb|AL662923.21| Mouse DNA sequence from clone RP23-25A3 on chromosome X, complete sequence Length = 211977 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cctattgttgaggcccaaaaggaa 316 |||||||||||||| ||||||||| Sbjct: 6289 cctattgttgaggcacaaaaggaa 6266
>dbj|AB016885.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22 Length = 77758 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 atgagtacaatcttgattgg 574 |||||||||||||||||||| Sbjct: 72593 atgagtacaatcttgattgg 72574
>dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0013H03 Length = 152998 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cgccactgacgatgtcgtcc 31 |||||||||||||||||||| Sbjct: 149616 cgccactgacgatgtcgtcc 149597
>gb|AE003642.3| Drosophila melanogaster chromosome 2L, section 51 of 83 of the complete sequence Length = 276521 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 taattgagaagctttcagtt 505 |||||||||||||||||||| Sbjct: 104916 taattgagaagctttcagtt 104935
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gcaataggagggagatgcaa 139 |||||||||||||||||||| Sbjct: 2222878 gcaataggagggagatgcaa 2222859
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 209 gtggagcatattattcgggagcaaaatatatt 240 ||||| |||||||||| | ||||||||||||| Sbjct: 1564030 gtggaacatattattccgaagcaaaatatatt 1564061
>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1090H08 Length = 200720 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cgccactgacgatgtcgtcc 31 |||||||||||||||||||| Sbjct: 68377 cgccactgacgatgtcgtcc 68358
>emb|AL845442.7| Mouse DNA sequence from clone RP23-392D9 on chromosome 2, complete sequence Length = 192013 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aaaatatattggctgcctat 250 |||||||||||||||||||| Sbjct: 15420 aaaatatattggctgcctat 15439 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,936,089 Number of Sequences: 3902068 Number of extensions: 4936089 Number of successful extensions: 103532 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102933 Number of HSP's gapped (non-prelim): 597 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)