ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14n08 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 114 bits (286), Expect = 2e-25 Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 14/206 (6%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 IVP V+PFI+ +I PDW R+AA AFGSILEGP +L PLV L+ KD + Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSV 421 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 VR+TTAW + R E L + + + L +L+ ++ + P VA +C A L Sbjct: 422 VVRDTTAWTVGRICELLPE-----AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 476 Query: 368 AHGYENAGSMSS--------VLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIVR 523 A A ++ LS F +V LL T DR D + + L +SAYE+L EIV+ Sbjct: 477 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 536 Query: 524 CS------SIADTLNMIVLLLQEILK 583 S ++ T +I+ LQ++L+ Sbjct: 537 NSAKDCYPAVQKTTLVIMERLQQVLQ 562
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 114 bits (285), Expect = 2e-25 Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 14/206 (6%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 IVP V+PFI+ +I PDW R+AA AFGSILEGP +L PLV L+ KD + Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVVAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSV 422 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 VR+TTAW + R E L + + + L +L+ ++ + P VA +C A L Sbjct: 423 VVRDTTAWTVGRICELLPE-----AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477 Query: 368 AHGYENAGSMSS--------VLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIVR 523 A A ++ LS F +V LL T DR D + + L +SAYE+L EIV+ Sbjct: 478 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 Query: 524 CS------SIADTLNMIVLLLQEILK 583 S ++ T +I+ LQ++L+ Sbjct: 538 NSAKDCYPAVQKTTLVIMERLQQVLQ 563
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 110 bits (276), Expect = 2e-24 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 14/206 (6%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 IVP V+PFI+ +I PDW R+AA AFG ILEGP +L PLV L+ KD + Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 422 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 VR+T AW + R E L + + + L +L+ ++ + P VA +C A L Sbjct: 423 VVRDTAAWTVGRICELLPE-----AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477 Query: 368 AHGYENAGSMSS--------VLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIVR 523 A A ++ LS F +V LL T DR D + + L +SAYE+L EIV+ Sbjct: 478 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 Query: 524 CS------SIADTLNMIVLLLQEILK 583 S ++ T +I+ LQ++L+ Sbjct: 538 NSAKDCYPAVQKTTLVIMERLQQVLQ 563
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 110 bits (274), Expect = 4e-24 Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 8/196 (4%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 IV V+ F+E NI PDWH REAA AFGS+LEGP+V L PLV L+N D Sbjct: 363 IVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGPNVAMLTPLVNQALPVLINMMVDPVI 422 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGA-LYF 364 V++TTAWAL + F+ ++ +L ++ +L + D+P + C A + Sbjct: 423 FVKDTTAWALGQISSFV-----ADAINPEIHLSPMVSALLQGLTDNPRIVANCCWAFMNL 477 Query: 365 LAHGYENAGSMSSVLSPYFGQLVSALLATAD-RSDSNNSRLCASAYETLNEIVRCSS--- 532 + H +SV++P++ ++ +LL D + + NNSR S YETL ++ SS Sbjct: 478 VCHFAPVDNHQTSVMTPFYEAIIGSLLHVTDQKGNENNSR--TSGYETLGTLITFSSDSV 535 Query: 533 ---IADTLNMIVLLLQ 571 IA+ L++I+ L+ Sbjct: 536 LPMIANVLSIILTRLE 551
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 102 bits (255), Expect = 6e-22 Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 7/183 (3%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 IVP V+PFI+ NI P+W R+AA FGS+L G L PLV+ L+ D + Sbjct: 369 IVPHVLPFIKENIESPNWRFRDAAVMTFGSVLNGLETNTLKPLVEQAMPTLIRLMYDSSV 428 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 VR+T AW R + + + + L +LE + S+K P VA +C A L Sbjct: 429 IVRDTIAWTFGRICDIIPE-----AAINETYLQTLLECFVKSLKSEPRVAANVCWAFIGL 483 Query: 368 AHGYENAGSMSS-------VLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIVRC 526 + A + LSPYF +++ LL T DRSD + L +AY+ L ++++ Sbjct: 484 SDAAWEAAVTNDGETPETYALSPYFEYIITQLLETTDRSDGAQANLRCAAYQALMDMIKN 543 Query: 527 SSI 535 S + Sbjct: 544 SPL 546
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 85.1 bits (209), Expect = 1e-16 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 2/181 (1%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 I+ V+ F+E NIT +W +REAA AFGSI++GP + V +LN DQ+ Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 V+ETTAW + R A + S+ +LP V++ L ++D P VA + L Sbjct: 426 QVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480 Query: 368 AHGYENAGSMSSVLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIVR--CSSIAD 541 + A + S + ++ LV L+ A+R D N ASA+ L +V ++A+ Sbjct: 481 VE--QLAEATPSPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTMVEYATDTVAE 537 Query: 542 T 544 T Sbjct: 538 T 538
>IMB2_SCHPO (O14089) Putative importin beta-2 subunit (Karyopherin beta-2| subunit) (Importin 104) (Transportin) (TRN) Length = 910 Score = 43.1 bits (100), Expect = 6e-04 Identities = 42/192 (21%), Positives = 81/192 (42%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 ++ +++P ++ ++T DW +EA A G+I EG ++ + + + + L+ + Sbjct: 411 LLEIILPHLKQSLTSEDWKVQEAGVLAVGAIAEG-CMDGMVQYLPELYPYFLSLLDSKKP 469 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 VR T W L R ++ S +P + ++ + ++ V E C A L Sbjct: 470 LVRTITCWTLGRYSKWASCLESEED-RQKYFVPLLQGLLRMVVDNNKKVQEAGCSAFAIL 528 Query: 368 AHGYENAGSMSSVLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIVRCSSIADTL 547 E AG L PY +++ L + N + A +TL + V S + Sbjct: 529 E---EQAGPS---LVPYLEPILTNLAFAFQKYQRKNVLILYDAVQTLADYV--GSALNDK 580 Query: 548 NMIVLLLQEILK 583 I LL+ +L+ Sbjct: 581 RYIELLITPLLQ 592
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 42.0 bits (97), Expect = 0.001 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 ++P ++P ++ + +W +E+ G+I EG ++ + P + L+ D+ Sbjct: 394 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIPHLIQCLSDKKA 452 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDS-PNVAEKICGALYF 364 VR T W LSR ++ VS + L ++ +L I DS V E C A Sbjct: 453 LVRSITCWTLSRYAHWV------VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFAT 506 Query: 365 LAHGYENAGSMSSVLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIV 520 L + L PY ++ L+ + N + A TL + V Sbjct: 507 LEE------EACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 552
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 42.0 bits (97), Expect = 0.001 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 ++P ++P ++ + +W +E+ G+I EG ++ + P + L+ D+ Sbjct: 394 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIPHLIQCLSDKKA 452 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDS-PNVAEKICGALYF 364 VR T W LSR ++ VS + L ++ +L I DS V E C A Sbjct: 453 LVRSITCWTLSRYAHWV------VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFAT 506 Query: 365 LAHGYENAGSMSSVLSPYFGQLVSALLATADRSDSNNSRLCASAYETLNEIV 520 L + L PY ++ L+ + N + A TL + V Sbjct: 507 LEE------EACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 552
>IMB2_YEAST (P38217) Importin beta-2 subunit (Karyopherin beta-2 subunit)| (Importin 104) (Transportin) (TRN) Length = 918 Score = 37.7 bits (86), Expect = 0.024 Identities = 36/144 (25%), Positives = 68/144 (47%) Frame = +2 Query: 8 IVPLVMPFIEGNITKPDWHSREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNN 187 ++ + PF+ ++ W REA A G++ EG ++ + A FL+ D+ Sbjct: 418 VMDIAFPFLREHLGSDRWFIREATILALGAMAEG-GMKYFNDGLPALIPFLVEQLNDKWA 476 Query: 188 HVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICGALYFL 367 VR+ T W LSR ++ + T +P VLE ++ ++ D ++ A+ + Sbjct: 477 PVRKMTCWTLSRFSPWI------LQDHTEFLIP-VLEPIINTLMDKKKDVQE--AAISSV 527 Query: 368 AHGYENAGSMSSVLSPYFGQLVSA 439 A ENA S V + ++ QL+++ Sbjct: 528 AVFIENADS-ELVETLFYSQLLTS 550
>YP01_HUMAN (Q7Z4Q2) Protein FLJ20718| Length = 680 Score = 33.9 bits (76), Expect = 0.35 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 3/143 (2%) Frame = +2 Query: 161 LNATKDQN-NHVRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVA 337 L KDQN N + ++ + + VS+ N LEI+L + P Sbjct: 145 LQEKKDQNRNSIENIANETVNVLWNICECSSRAVSIF---NKEGCLEIVLKYLSRFPTNV 201 Query: 338 EKICGALYFLAHGYE-NAGSMSSVLSPYFGQLVSALLATADRSDSNNSR-LCASAYETLN 511 + Y L E N + S + L SALL+ +S + L A L Sbjct: 202 DLAISVAYCLQTVTEDNPELLKSFSATALNMLESALLSPVSSMESLLLKTLVAGTIWNLK 261 Query: 512 EIVRCSSIADTLNMIVLLLQEIL 580 +I+ C S A+ +N ++ +L E+L Sbjct: 262 DIIPCKSQAEIINALLKILSEVL 284
>UVRA_YERPE (Q8ZJ07) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 947 Score = 32.7 bits (73), Expect = 0.79 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 191 VRETTAWALSRTFEFLHAPTSGVSVVTNANLPHVLEIMLTSIKDSPNVAEKICG 352 VRE A L+ +FE A + G +VV + + PHV E++ S N A ICG Sbjct: 209 VREDLAQRLAESFETALALSGGTAVVADMDDPHVEELLF-----SANFACPICG 257
>MT_STENE (P55953) Metallothionein (MT)| Length = 64 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Frame = +1 Query: 166 CNQGSK*PCQGDYCMGTFEDL*VSTC----TNQWCFCSDKCK-PSSCS 294 C +G + C+G C T E TC TN C C+D CK S CS Sbjct: 9 CKEGKECACKGKECCTTGECCKDGTCCGKCTNAACKCADGCKCGSGCS 56
>YN86_YEAST (P27514) Hypothetical 99.5 kDa protein in URK1-SMM1 intergenic| region Length = 894 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -1 Query: 210 HAVVSLTWLF*SLVAFSKKSKPA*TRGASFSTEGPSRMEPNANVAASLLCQSG--FVILP 37 H V ++ ++ +K + A T FS S++ PNAN+ S+ SG +I P Sbjct: 342 HVVWERNTVWKDMMNLERKYQSAKTDNKKFSKLSSSQLRPNANITESMAMSSGGAGIIAP 401 Query: 36 SINGIT 19 S + +T Sbjct: 402 STDSLT 407
>PALY_AMAMU (O93967) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 740 Score = 31.6 bits (70), Expect = 1.8 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = +2 Query: 68 REAATFAFGSILEGPSVEKLAPLVQAGFDFLLNATKDQNNHVRETTAWALSRTFEFLHAP 247 RE +FGS L +EKL + + F+ L+ T +N R TT A S + Sbjct: 565 REELRSSFGSFLSSEQMEKLQQNLTSAFEDHLDKTTTMDNTDRMTTMAATSSSVLLQFFT 624 Query: 248 TSGVSV 265 SG SV Sbjct: 625 DSGASV 630
>MTB_SPHGR (Q26496) Metallothionein-B (MTB) (Fragment)| Length = 67 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Frame = +1 Query: 166 CNQGSK*PCQGDYCMGTF------EDL*VSTCTNQWCFCSDKCK-PSSCS 294 C G + PC+G C T + L C+N C C+D CK S CS Sbjct: 10 CQDGEECPCKGGECCITGTCCKEGDGLCCGKCSNAACKCADGCKCGSGCS 59
>MTA_SPHGR (Q26497) Metallothionein-A (MTA) (Fragment)| Length = 67 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Frame = +1 Query: 166 CNQGSK*PCQGDYCMGTF------EDL*VSTCTNQWCFCSDKCK-PSSCS 294 C G + PC+G C T + L C+N C C+D CK S CS Sbjct: 10 CQDGKECPCKGGECCITGSCCKEGDGLCCGKCSNAACKCADGCKCGSGCS 59
>ERA_THEMA (Q9WZV1) GTP-binding protein era homolog| Length = 300 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = +2 Query: 266 VTNANLPHVLEIMLTSIKDSPNVAEKICGALYFLAHGYENAGSMSSVLSPYFGQLVSAL 442 +T +PH +++ IKD PN G LY A+ Y S +L G ++ + Sbjct: 202 LTRQEVPHSTAVVIEEIKDRPN------GVLYIRANIYVERDSQKGILIGKNGSMIKKI 254
>NF1_HUMAN (P21359) Neurofibromin (Neurofibromatosis-related protein NF-1)| [Contains: Neurofibromin truncated] Length = 2839 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -1 Query: 585 LFKISCNN-NTIMFKVSAMLLHLTISLSVSYADAQSLELLE 466 LF +SCNN N + ++S L LT+ S D +ELL+ Sbjct: 142 LFSLSCNNFNAVFSRISTRLQELTV-CSEDNVDVHDIELLQ 181
>NF1_RAT (P97526) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2820 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -1 Query: 585 LFKISCNN-NTIMFKVSAMLLHLTISLSVSYADAQSLELLE 466 LF +SCNN N + ++S L LT+ S D +ELL+ Sbjct: 142 LFSLSCNNFNAVFSRISTRLQELTV-CSEDNVDVHDIELLQ 181
>NF1_MOUSE (Q04690) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2841 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -1 Query: 585 LFKISCNN-NTIMFKVSAMLLHLTISLSVSYADAQSLELLE 466 LF +SCNN N + ++S L LT+ S D +ELL+ Sbjct: 142 LFSLSCNNFNAVFSRISTRLQELTV-CSEDNVDVHDIELLQ 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,604,795 Number of Sequences: 219361 Number of extensions: 1642004 Number of successful extensions: 4674 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4646 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
