ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9m05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 42 1.0
2gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, comple... 40 4.0
3gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and T... 40 4.0
4gb|BC044759.2| Mus musculus progesterone receptor membrane compo... 40 4.0
5ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor m... 40 4.0
6ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor m... 40 4.0
7ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor m... 40 4.0
8gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, com... 40 4.0
9gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosom... 40 4.0
10gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, comple... 40 4.0
11gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, co... 40 4.0
12emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23... 40 4.0
13dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDN... 40 4.0
14dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN fu... 40 4.0
15dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 4.0
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
17gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, com... 40 4.0
18gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromo... 40 4.0
19dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
20emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on ch... 40 4.0

>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
             sequence
          Length = 271546

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   aatattatttttcttggaaaa 180
             |||||||||||||||||||||
Sbjct: 37263 aatattatttttcttggaaaa 37243



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>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence
          Length = 184603

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      ttgcgaacattgatgggctg 22
              ||||||||||||||||||||
Sbjct: 127907 ttgcgaacattgatgggctg 127926



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>gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and Tnf receptor
           associated protein-like mRNA, complete sequence
          Length = 1381

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   gaacattgatgggctggatc 26
           ||||||||||||||||||||
Sbjct: 275 gaacattgatgggctggatc 294



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>gb|BC044759.2| Mus musculus progesterone receptor membrane component 2, mRNA (cDNA
            clone IMAGE:5061936), partial cds
          Length = 2951

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1580 atttttcttggaaaagaaaa 1561



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>ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor membrane component 2
            (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630



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>ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 1 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630



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>ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 3 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630



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>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence
          Length = 162417

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 26     cgtggtctataaacacacagaata 49
              |||||| |||||||||||||||||
Sbjct: 105757 cgtggtatataaacacacagaata 105734



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>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence
          Length = 167741

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ttgcgaacattgatgggctg 22
             ||||||||||||||||||||
Sbjct: 55387 ttgcgaacattgatgggctg 55406



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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ctcatgcatgagccatgcat 236
             ||||||||||||||||||||
Sbjct: 65253 ctcatgcatgagccatgcat 65234



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>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence
          Length = 200790

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   atttttcttggaaaagaaaa 185
             ||||||||||||||||||||
Sbjct: 40220 atttttcttggaaaagaaaa 40239



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>emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23 on chromosome Xq21.21-22.1,
             complete sequence
          Length = 122777

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gaatattatttttcttggaa 178
             ||||||||||||||||||||
Sbjct: 58941 gaatattatttttcttggaa 58922



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>dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230117D02 product:progesterone
            receptor membrane component 2, full insert sequence
          Length = 2972

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1619 atttttcttggaaaagaaaa 1600



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>dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched
           library, clone:G430007N18 product:progesterone receptor
           membrane component 2, full insert sequence
          Length = 1019

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 atttttcttggaaaagaaaa 185
           ||||||||||||||||||||
Sbjct: 822 atttttcttggaaaagaaaa 803



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>dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4631434O19 product:MEMBRANE ASSOCIATED
            PROGESTERONE RECEPTOR COMPONENT 2 (PROGESTERONE MEMBRANE
            BINDING PROTEIN) (STEROID RECEPTOR PROTEIN DG6) homolog
            [Homo sapiens], full insert sequence
          Length = 2558

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1538 atttttcttggaaaagaaaa 1519



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 176      gaaaagaaaaacgtgttata 195
                ||||||||||||||||||||
Sbjct: 14742155 gaaaagaaaaacgtgttata 14742136



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>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence
          Length = 183088

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ttttcttggaaaagaaaaac 187
             ||||||||||||||||||||
Sbjct: 27202 ttttcttggaaaagaaaaac 27183



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>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete
              sequence
          Length = 168606

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    atattatttttcttggaaaagaaa 184
              |||||||||||||| |||||||||
Sbjct: 164789 atattatttttctttgaaaagaaa 164812



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>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0707C02
          Length = 163609

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   gaaaagaaaaacgtgttata 195
             ||||||||||||||||||||
Sbjct: 27544 gaaaagaaaaacgtgttata 27525



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>emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on chromosome 17, complete
             sequence
          Length = 122522

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    cgtggtctataaacacacagaata 49
             |||||| |||||||||||||||||
Sbjct: 23715 cgtggtatataaacacacagaata 23692


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,778,736
Number of Sequences: 3902068
Number of extensions: 2778736
Number of successful extensions: 47837
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47795
Number of HSP's gapped (non-prelim): 42
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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