| Clone Name | bags14n03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full insert sequence Length = 2797 Score = 46.1 bits (23), Expect = 0.009 Identities = 41/47 (87%) Strand = Plus / Plus Query: 1 cagccgcttatggtgcctatcctcccacataccctgcccaggcctac 47 |||| ||||| || ||||||||||| |||||||| || ||||||||| Sbjct: 2386 cagctgcttacggcgcctatcctccaacataccccgctcaggcctac 2432
>ref|XM_744042.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g03730) partial mRNA Length = 744 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 gcctatcctcccacatacc 33 ||||||||||||||||||| Sbjct: 655 gcctatcctcccacatacc 637
>ref|XM_773922.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_49_21919_24513) partial mRNA Length = 2595 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 ataccctgcccaggcctac 47 ||||||||||||||||||| Sbjct: 478 ataccctgcccaggcctac 460
>emb|AL513008.14| Human DNA sequence from clone RP11-533O20 on chromosome 6 Contains the 5' end of a novel gene for protein similar to prodos protein, a novel gene and a CpG island, complete sequence Length = 105079 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 tcctcccacataccctgcc 38 ||||||||||||||||||| Sbjct: 70785 tcctcccacataccctgcc 70767
>ref|XM_686474.1| PREDICTED: Danio rerio similar to CDNA sequence BC036563 (LOC563108), mRNA Length = 2171 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 8 ttatggtgcctatcctcccacat 30 |||||||||||||||||| |||| Sbjct: 1757 ttatggtgcctatcctccaacat 1779
>gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete sequence Length = 98801 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 atggtgcctatcctccca 27 |||||||||||||||||| Sbjct: 81517 atggtgcctatcctccca 81534
>gb|DQ141111.1| Drosophila yakuba Dscam gene, partial sequence Length = 56981 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 33 cctgcccaggcctacccg 50 |||||||||||||||||| Sbjct: 21951 cctgcccaggcctacccg 21968
>ref|XM_513740.1| PREDICTED: Pan troglodytes similar to tumor protein p73; p53-related protein (LOC457234), mRNA Length = 2044 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 ccacataccctgcccagg 42 |||||||||||||||||| Sbjct: 827 ccacataccctgcccagg 810
>gb|AY690428.1| Ajellomyces capsulatus lanosterol 14-alpha-demethylase (ERG11) gene, complete cds Length = 3525 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 tatcctcccacataccct 35 |||||||||||||||||| Sbjct: 3500 tatcctcccacataccct 3517
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 8.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 1 cagccgcttatggtgcctatcctcccacataccc 34 |||| ||||| || ||||||||||| |||||||| Sbjct: 5729639 cagctgcttacggcgcctatcctccaacataccc 5729606
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 cctcccacataccctgcc 38 |||||||||||||||||| Sbjct: 129378 cctcccacataccctgcc 129361 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 cctcccacataccctgcc 38 |||||||||||||||||| Sbjct: 113635 cctcccacataccctgcc 113652
>gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete sequence Length = 96721 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 atggtgcctatcctccca 27 |||||||||||||||||| Sbjct: 32104 atggtgcctatcctccca 32087
>gb|AC084212.17| Homo sapiens 3 BAC RP11-109B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145318 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 cctcccacataccctgcc 38 |||||||||||||||||| Sbjct: 41404 cctcccacataccctgcc 41387
>gb|AC104520.2| Homo sapiens chromosome 19 clone LLNLF-137B9, complete sequence Length = 31632 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 33 cctgcccaggcctacccg 50 |||||||||||||||||| Sbjct: 25773 cctgcccaggcctacccg 25756
>gb|DQ317106.1| Drosophila yakuba Dscam gene, exons 3 through 24 Length = 60717 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 33 cctgcccaggcctacccg 50 |||||||||||||||||| Sbjct: 22707 cctgcccaggcctacccg 22724
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 36.2 bits (18), Expect = 8.6 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 cagccgcttatggtgcctatcctcccacataccc 34 |||| ||||| || ||||||||||| |||||||| Sbjct: 101532 cagctgcttacggcgcctatcctccaacataccc 101565
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 8.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 1 cagccgcttatggtgcctatcctcccacataccc 34 |||| ||||| || ||||||||||| |||||||| Sbjct: 5728852 cagctgcttacggcgcctatcctccaacataccc 5728819
>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence Length = 243870 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 tcccacataccctgccca 40 |||||||||||||||||| Sbjct: 216752 tcccacataccctgccca 216769
>gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26, complete sequence Length = 124095 Score = 36.2 bits (18), Expect = 8.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 20 tcctcccacataccctgcccag 41 |||||||||||||||| ||||| Sbjct: 122191 tcctcccacataccctacccag 122212
>gb|AC005595.1|AC005595 Homo sapiens chromosome 19, cosmid F16601, complete sequence Length = 39303 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 33 cctgcccaggcctacccg 50 |||||||||||||||||| Sbjct: 7361 cctgcccaggcctacccg 7344 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 237,826 Number of Sequences: 3902068 Number of extensions: 237826 Number of successful extensions: 18077 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18053 Number of HSP's gapped (non-prelim): 24 length of query: 60 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 39 effective length of database: 17,151,101,840 effective search space: 668892971760 effective search space used: 668892971760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)