ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14n03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.009
2ref|XM_744042.1| Aspergillus fumigatus Af293 hypothetical protei... 38 2.2
3ref|XM_773922.1| Giardia lamblia ATCC 50803 hypothetical protein... 38 2.2
4emb|AL513008.14| Human DNA sequence from clone RP11-533O20 on ch... 38 2.2
5ref|XM_686474.1| PREDICTED: Danio rerio similar to CDNA sequence... 38 2.2
6gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete seq... 36 8.6
7gb|DQ141111.1| Drosophila yakuba Dscam gene, partial sequence 36 8.6
8ref|XM_513740.1| PREDICTED: Pan troglodytes similar to tumor pro... 36 8.6
9gb|AY690428.1| Ajellomyces capsulatus lanosterol 14-alpha-demeth... 36 8.6
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 8.6
11gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 36 8.6
12gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete seq... 36 8.6
13gb|AC084212.17| Homo sapiens 3 BAC RP11-109B8 (Roswell Park Canc... 36 8.6
14gb|AC104520.2| Homo sapiens chromosome 19 clone LLNLF-137B9, com... 36 8.6
15gb|DQ317106.1| Drosophila yakuba Dscam gene, exons 3 through 24 36 8.6
16gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 36 8.6
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.6
18emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, c... 36 8.6
19gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26,... 36 8.6
20gb|AC005595.1|AC005595 Homo sapiens chromosome 19, cosmid F16601... 36 8.6

>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full
            insert sequence
          Length = 2797

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 1    cagccgcttatggtgcctatcctcccacataccctgcccaggcctac 47
            |||| ||||| || ||||||||||| |||||||| || |||||||||
Sbjct: 2386 cagctgcttacggcgcctatcctccaacataccccgctcaggcctac 2432



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>ref|XM_744042.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g03730)
           partial mRNA
          Length = 744

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  gcctatcctcccacatacc 33
           |||||||||||||||||||
Sbjct: 655 gcctatcctcccacatacc 637



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>ref|XM_773922.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_49_21919_24513) partial mRNA
          Length = 2595

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 29  ataccctgcccaggcctac 47
           |||||||||||||||||||
Sbjct: 478 ataccctgcccaggcctac 460



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>emb|AL513008.14| Human DNA sequence from clone RP11-533O20 on chromosome 6 Contains the
             5' end of a novel gene for protein similar to prodos
             protein, a novel gene and a CpG island, complete sequence
          Length = 105079

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    tcctcccacataccctgcc 38
             |||||||||||||||||||
Sbjct: 70785 tcctcccacataccctgcc 70767



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>ref|XM_686474.1| PREDICTED: Danio rerio similar to CDNA sequence BC036563 (LOC563108),
            mRNA
          Length = 2171

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 8    ttatggtgcctatcctcccacat 30
            |||||||||||||||||| ||||
Sbjct: 1757 ttatggtgcctatcctccaacat 1779



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>gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete sequence
          Length = 98801

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    atggtgcctatcctccca 27
             ||||||||||||||||||
Sbjct: 81517 atggtgcctatcctccca 81534



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>gb|DQ141111.1| Drosophila yakuba Dscam gene, partial sequence
          Length = 56981

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    cctgcccaggcctacccg 50
             ||||||||||||||||||
Sbjct: 21951 cctgcccaggcctacccg 21968



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>ref|XM_513740.1| PREDICTED: Pan troglodytes similar to tumor protein p73;
           p53-related protein (LOC457234), mRNA
          Length = 2044

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 25  ccacataccctgcccagg 42
           ||||||||||||||||||
Sbjct: 827 ccacataccctgcccagg 810



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>gb|AY690428.1| Ajellomyces capsulatus lanosterol 14-alpha-demethylase (ERG11) gene,
            complete cds
          Length = 3525

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 18   tatcctcccacataccct 35
            ||||||||||||||||||
Sbjct: 3500 tatcctcccacataccct 3517



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                                 
Query: 1       cagccgcttatggtgcctatcctcccacataccc 34
               |||| ||||| || ||||||||||| ||||||||
Sbjct: 5729639 cagctgcttacggcgcctatcctccaacataccc 5729606



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>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     cctcccacataccctgcc 38
              ||||||||||||||||||
Sbjct: 129378 cctcccacataccctgcc 129361



 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     cctcccacataccctgcc 38
              ||||||||||||||||||
Sbjct: 113635 cctcccacataccctgcc 113652



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>gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete sequence
          Length = 96721

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    atggtgcctatcctccca 27
             ||||||||||||||||||
Sbjct: 32104 atggtgcctatcctccca 32087



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>gb|AC084212.17| Homo sapiens 3 BAC RP11-109B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145318

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    cctcccacataccctgcc 38
             ||||||||||||||||||
Sbjct: 41404 cctcccacataccctgcc 41387



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>gb|AC104520.2| Homo sapiens chromosome 19 clone LLNLF-137B9, complete sequence
          Length = 31632

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    cctgcccaggcctacccg 50
             ||||||||||||||||||
Sbjct: 25773 cctgcccaggcctacccg 25756



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>gb|DQ317106.1| Drosophila yakuba Dscam gene, exons 3 through 24
          Length = 60717

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    cctgcccaggcctacccg 50
             ||||||||||||||||||
Sbjct: 22707 cctgcccaggcctacccg 22724



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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                
Query: 1      cagccgcttatggtgcctatcctcccacataccc 34
              |||| ||||| || ||||||||||| ||||||||
Sbjct: 101532 cagctgcttacggcgcctatcctccaacataccc 101565



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                                 
Query: 1       cagccgcttatggtgcctatcctcccacataccc 34
               |||| ||||| || ||||||||||| ||||||||
Sbjct: 5728852 cagctgcttacggcgcctatcctccaacataccc 5728819



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>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     tcccacataccctgccca 40
              ||||||||||||||||||
Sbjct: 216752 tcccacataccctgccca 216769



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>gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26, complete sequence
          Length = 124095

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 20     tcctcccacataccctgcccag 41
              |||||||||||||||| |||||
Sbjct: 122191 tcctcccacataccctacccag 122212



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>gb|AC005595.1|AC005595 Homo sapiens chromosome 19, cosmid F16601, complete sequence
          Length = 39303

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 33   cctgcccaggcctacccg 50
            ||||||||||||||||||
Sbjct: 7361 cctgcccaggcctacccg 7344


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 237,826
Number of Sequences: 3902068
Number of extensions: 237826
Number of successful extensions: 18077
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18053
Number of HSP's gapped (non-prelim): 24
length of query: 60
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 39
effective length of database: 17,151,101,840
effective search space: 668892971760
effective search space used: 668892971760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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