| Clone Name | bags15b22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187347.2| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 448 bits (226), Expect = e-122 Identities = 397/454 (87%) Strand = Plus / Plus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 252 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 311 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggttgatatggta 177 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct: 312 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggttgacatggta 371 Query: 178 atggtaccggctacaactggcctgatgggtattttgccaggccatgtttccacaattgca 237 || ||||| || |||||||| | ||||||| ||||||||||||| ||||||||||| ||| Sbjct: 372 attgtaccagcaacaactggtcagatgggtgttttgccaggccacgtttccacaatcgca 431 Query: 238 gagctcaagcctggtgttatgtctgtacacgagggaaatgatgttacaaagtactttgtg 297 |||||||||||||||||| | || |||||||||||||| ||| | || |||||||||||| Sbjct: 432 gagctcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtg 491 Query: 298 agcagtggctttgcattcatccatgcaaactccattactgatgttgtggctgttgaggct 357 ||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||| Sbjct: 492 agcagtggctttgcatttgtccatgcaaactccatcgctgatatcgtggctgttgaggct 551 Query: 358 gtcccccttgatcagattgaccaaagcttggtccagaaaggtcttgctgaattcactgcc 417 |||||||| || ||||| |||| | | ||||||| | ||||| || ||||||| ||| Sbjct: 552 gtccccctggaccagatcgacccagccgcggtccagcagggtctcgcggaattcaacgcc 611 Query: 418 aagcttggatcagcctcgactgacctaaagaaggcggaagctcagatcggagtggatgtt 477 ||||||||||| ||||| ||||| || ||||||| ||||||||||| |||||||||||| Sbjct: 612 aagcttggatcggcctcaactgaactggagaaggccgaagctcagattggagtggatgtt 671 Query: 478 cacagtgcgctcaatgctgcattgactggttgat 511 ||||||||||||||||| || ||| ||||||||| Sbjct: 672 cacagtgcgctcaatgccgctttggctggttgat 705 Score = 103 bits (52), Expect = 7e-19 Identities = 86/95 (90%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 542 catctacatctttagaatgtgagttgaagcctgcaaactcaatgaatga--ggatggagg 599 ||||| ||| ||||||||||||| ||||| |||||||||| || |||| ||||||||| Sbjct: 744 catcttcatttttagaatgtgagctgaagtttgcaaactca-tggatgatgggatggagg 802 Query: 600 gaatgatcttaaataaattatactccatctcaaag 634 ||||||||||||||||||||||||||||||||||| Sbjct: 803 gaatgatcttaaataaattatactccatctcaaag 837
>dbj|AK070990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O13, full insert sequence Length = 935 Score = 448 bits (226), Expect = e-122 Identities = 397/454 (87%) Strand = Plus / Plus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 252 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 311 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggttgatatggta 177 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct: 312 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggttgacatggta 371 Query: 178 atggtaccggctacaactggcctgatgggtattttgccaggccatgtttccacaattgca 237 || ||||| || |||||||| | ||||||| ||||||||||||| ||||||||||| ||| Sbjct: 372 attgtaccagcaacaactggtcagatgggtgttttgccaggccacgtttccacaatcgca 431 Query: 238 gagctcaagcctggtgttatgtctgtacacgagggaaatgatgttacaaagtactttgtg 297 |||||||||||||||||| | || |||||||||||||| ||| | || |||||||||||| Sbjct: 432 gagctcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtg 491 Query: 298 agcagtggctttgcattcatccatgcaaactccattactgatgttgtggctgttgaggct 357 ||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||| Sbjct: 492 agcagtggctttgcatttgtccatgcaaactccatcgctgatatcgtggctgttgaggct 551 Query: 358 gtcccccttgatcagattgaccaaagcttggtccagaaaggtcttgctgaattcactgcc 417 |||||||| || ||||| |||| | | ||||||| | ||||| || ||||||| ||| Sbjct: 552 gtccccctggaccagatcgacccagccgcggtccagcagggtctcgcggaattcaacgcc 611 Query: 418 aagcttggatcagcctcgactgacctaaagaaggcggaagctcagatcggagtggatgtt 477 ||||||||||| ||||| ||||| || ||||||| ||||||||||| |||||||||||| Sbjct: 612 aagcttggatcggcctcaactgaactggagaaggccgaagctcagattggagtggatgtt 671 Query: 478 cacagtgcgctcaatgctgcattgactggttgat 511 ||||||||||||||||| || ||| ||||||||| Sbjct: 672 cacagtgcgctcaatgccgctttggctggttgat 705 Score = 103 bits (52), Expect = 7e-19 Identities = 86/95 (90%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 542 catctacatctttagaatgtgagttgaagcctgcaaactcaatgaatga--ggatggagg 599 ||||| ||| ||||||||||||| ||||| |||||||||| || |||| ||||||||| Sbjct: 744 catcttcatttttagaatgtgagctgaagtttgcaaactca-tggatgatgggatggagg 802 Query: 600 gaatgatcttaaataaattatactccatctcaaag 634 ||||||||||||||||||||||||||||||||||| Sbjct: 803 gaatgatcttaaataaattatactccatctcaaag 837
>gb|AY104575.1| Zea mays PCO138774 mRNA sequence Length = 1041 Score = 446 bits (225), Expect = e-122 Identities = 384/437 (87%) Strand = Plus / Plus Query: 72 catgaagccccgcccgcccacgccggcctccatcccatctaagctcaccgtcaacttcgt 131 |||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct: 283 catgcagccgcgcccgcccacgccggctaccatccccactaagctcaccgtcaacttcgt 342 Query: 132 cctcccctacaagtccgagatcaccaataaggaggttgatatggtaatggtaccggctac 191 |||||||||||||||||||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct: 343 cctcccctacaagtccgagatcgccaacaaggaggtggacatggtaattgtaccagctac 402 Query: 192 aactggcctgatgggtattttgccaggccatgtttccacaattgcagagctcaagcctgg 251 |||||| | |||||| ||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 403 aactggtcagatgggcgttttgccaggccatgttgccacgattgcagagctcaagcctgg 462 Query: 252 tgttatgtctgtacacgagggaaatgatgttacaaagtactttgtgagcagtggctttgc 311 |||| | || ||||| ||||| || ||||| || |||||||||||||||||||| ||||| Sbjct: 463 tgttctctcagtacatgaggggaacgatgtgaccaagtactttgtgagcagtggatttgc 522 Query: 312 attcatccatgcaaactccattactgatgttgtggctgttgaggctgtcccccttgatca 371 ||| ||||||||||||||||| ||||| |||||||||||||||||||||| | ||||| Sbjct: 523 tttcgtccatgcaaactccattgctgatattgtggctgttgaggctgtccctgtggatca 582 Query: 372 gattgaccaaagcttggtccagaaaggtcttgctgaattcactgccaagcttggatcagc 431 ||| |||| | || || ||||| ||||| ||||||||||||||||||||||| || || Sbjct: 583 gatcgacccagcttttgttcagaagggtctcgctgaattcactgccaagcttggttcggc 642 Query: 432 ctcgactgacctaaagaaggcggaagctcagatcggagtggatgttcacagtgcgctcaa 491 ||| |||||||| ||||||| || ||||||||||| || |||||||||||||||||||| Sbjct: 643 ctctactgacctggagaaggctgaggctcagatcggtgtcgatgttcacagtgcgctcaa 702 Query: 492 tgctgcattgactggtt 508 |||||||||||| |||| Sbjct: 703 tgctgcattgaccggtt 719 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gtggaggcgtggaagaaggt 31 |||||||||||||||||||| Sbjct: 224 gtggaggcgtggaagaaggt 243
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 325 bits (164), Expect = 1e-85 Identities = 302/348 (86%) Strand = Plus / Minus Query: 164 aggttgatatggtaatggtaccggctacaactggcctgatgggtattttgccaggccatg 223 ||||||| |||||||| ||||| || |||||||| | ||||||| ||||||||||||| | Sbjct: 18479545 aggttgacatggtaattgtaccagcaacaactggtcagatgggtgttttgccaggccacg 18479486 Query: 224 tttccacaattgcagagctcaagcctggtgttatgtctgtacacgagggaaatgatgtta 283 |||||||||| ||||||||||||||||||||| | || |||||||||||||| ||| | | Sbjct: 18479485 tttccacaatcgcagagctcaagcctggtgttctctcggtacacgagggaaacgatatca 18479426 Query: 284 caaagtactttgtgagcagtggctttgcattcatccatgcaaactccattactgatgttg 343 | ||||||||||||||||||||||||||||| |||||||||||||||| ||||| | | Sbjct: 18479425 ccaagtactttgtgagcagtggctttgcatttgtccatgcaaactccatcgctgatatcg 18479366 Query: 344 tggctgttgaggctgtcccccttgatcagattgaccaaagcttggtccagaaaggtcttg 403 |||||||||||||||||||||| || ||||| |||| | | ||||||| | ||||| | Sbjct: 18479365 tggctgttgaggctgtccccctggaccagatcgacccagccgcggtccagcagggtctcg 18479306 Query: 404 ctgaattcactgccaagcttggatcagcctcgactgacctaaagaaggcggaagctcaga 463 | ||||||| |||||||||||||| ||||| ||||| || ||||||| |||||||||| Sbjct: 18479305 cggaattcaacgccaagcttggatcggcctcaactgaactggagaaggccgaagctcaga 18479246 Query: 464 tcggagtggatgttcacagtgcgctcaatgctgcattgactggttgat 511 | ||||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 18479245 ttggagtggatgttcacagtgcgctcaatgccgctttggctggttgat 18479198 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 18487527 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 18487468 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 18487467 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 18487418 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 18481252 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 18481193 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 18481192 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 18481143 Score = 103 bits (52), Expect = 7e-19 Identities = 86/95 (90%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 542 catctacatctttagaatgtgagttgaagcctgcaaactcaatgaatga--ggatggagg 599 ||||| ||| ||||||||||||| ||||| |||||||||| || |||| ||||||||| Sbjct: 18479159 catcttcatttttagaatgtgagctgaagtttgcaaactca-tggatgatgggatggagg 18479101 Query: 600 gaatgatcttaaataaattatactccatctcaaag 634 ||||||||||||||||||||||||||||||||||| Sbjct: 18479100 gaatgatcttaaataaattatactccatctcaaag 18479066
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 325 bits (164), Expect = 1e-85 Identities = 302/348 (86%) Strand = Plus / Minus Query: 164 aggttgatatggtaatggtaccggctacaactggcctgatgggtattttgccaggccatg 223 ||||||| |||||||| ||||| || |||||||| | ||||||| ||||||||||||| | Sbjct: 8301 aggttgacatggtaattgtaccagcaacaactggtcagatgggtgttttgccaggccacg 8242 Query: 224 tttccacaattgcagagctcaagcctggtgttatgtctgtacacgagggaaatgatgtta 283 |||||||||| ||||||||||||||||||||| | || |||||||||||||| ||| | | Sbjct: 8241 tttccacaatcgcagagctcaagcctggtgttctctcggtacacgagggaaacgatatca 8182 Query: 284 caaagtactttgtgagcagtggctttgcattcatccatgcaaactccattactgatgttg 343 | ||||||||||||||||||||||||||||| |||||||||||||||| ||||| | | Sbjct: 8181 ccaagtactttgtgagcagtggctttgcatttgtccatgcaaactccatcgctgatatcg 8122 Query: 344 tggctgttgaggctgtcccccttgatcagattgaccaaagcttggtccagaaaggtcttg 403 |||||||||||||||||||||| || ||||| |||| | | ||||||| | ||||| | Sbjct: 8121 tggctgttgaggctgtccccctggaccagatcgacccagccgcggtccagcagggtctcg 8062 Query: 404 ctgaattcactgccaagcttggatcagcctcgactgacctaaagaaggcggaagctcaga 463 | ||||||| |||||||||||||| ||||| ||||| || ||||||| |||||||||| Sbjct: 8061 cggaattcaacgccaagcttggatcggcctcaactgaactggagaaggccgaagctcaga 8002 Query: 464 tcggagtggatgttcacagtgcgctcaatgctgcattgactggttgat 511 | ||||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 8001 ttggagtggatgttcacagtgcgctcaatgccgctttggctggttgat 7954 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 16283 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 16224 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 16223 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 16174 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 10008 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 9949 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 9948 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 9899 Score = 103 bits (52), Expect = 7e-19 Identities = 86/95 (90%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 542 catctacatctttagaatgtgagttgaagcctgcaaactcaatgaatga--ggatggagg 599 ||||| ||| ||||||||||||| ||||| |||||||||| || |||| ||||||||| Sbjct: 7915 catcttcatttttagaatgtgagctgaagtttgcaaactca-tggatgatgggatggagg 7857 Query: 600 gaatgatcttaaataaattatactccatctcaaag 634 ||||||||||||||||||||||||||||||||||| Sbjct: 7856 gaatgatcttaaataaattatactccatctcaaag 7822
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_B11 Length = 102824 Score = 325 bits (164), Expect = 1e-85 Identities = 302/348 (86%) Strand = Plus / Minus Query: 164 aggttgatatggtaatggtaccggctacaactggcctgatgggtattttgccaggccatg 223 ||||||| |||||||| ||||| || |||||||| | ||||||| ||||||||||||| | Sbjct: 71393 aggttgacatggtaattgtaccagcaacaactggtcagatgggtgttttgccaggccacg 71334 Query: 224 tttccacaattgcagagctcaagcctggtgttatgtctgtacacgagggaaatgatgtta 283 |||||||||| ||||||||||||||||||||| | || |||||||||||||| ||| | | Sbjct: 71333 tttccacaatcgcagagctcaagcctggtgttctctcggtacacgagggaaacgatatca 71274 Query: 284 caaagtactttgtgagcagtggctttgcattcatccatgcaaactccattactgatgttg 343 | ||||||||||||||||||||||||||||| |||||||||||||||| ||||| | | Sbjct: 71273 ccaagtactttgtgagcagtggctttgcatttgtccatgcaaactccatcgctgatatcg 71214 Query: 344 tggctgttgaggctgtcccccttgatcagattgaccaaagcttggtccagaaaggtcttg 403 |||||||||||||||||||||| || ||||| |||| | | ||||||| | ||||| | Sbjct: 71213 tggctgttgaggctgtccccctggaccagatcgacccagccgcggtccagcagggtctcg 71154 Query: 404 ctgaattcactgccaagcttggatcagcctcgactgacctaaagaaggcggaagctcaga 463 | ||||||| |||||||||||||| ||||| ||||| || ||||||| |||||||||| Sbjct: 71153 cggaattcaacgccaagcttggatcggcctcaactgaactggagaaggccgaagctcaga 71094 Query: 464 tcggagtggatgttcacagtgcgctcaatgctgcattgactggttgat 511 | ||||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 71093 ttggagtggatgttcacagtgcgctcaatgccgctttggctggttgat 71046 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 79375 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 79316 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 79315 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 79266 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 73100 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 73041 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 73040 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 72991 Score = 103 bits (52), Expect = 7e-19 Identities = 86/95 (90%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 542 catctacatctttagaatgtgagttgaagcctgcaaactcaatgaatga--ggatggagg 599 ||||| ||| ||||||||||||| ||||| |||||||||| || |||| ||||||||| Sbjct: 71007 catcttcatttttagaatgtgagctgaagtttgcaaactca-tggatgatgggatggagg 70949 Query: 600 gaatgatcttaaataaattatactccatctcaaag 634 ||||||||||||||||||||||||||||||||||| Sbjct: 70948 gaatgatcttaaataaattatactccatctcaaag 70914
>ref|NM_187349.1| Oryza sativa (japonica cultivar-group), mRNA Length = 327 Score = 131 bits (66), Expect = 3e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 58 acgcctatgtcggccatgaagccccgcccgcccacgccggcctccatcccatctaagctc 117 ||||| |||||| |||| |||||||||| ||||||||||| ||||||| || |||||| Sbjct: 172 acgcccatgtcgctcatgcagccccgcccccccacgccggcggccatcccctccaagctc 231 Query: 118 accgtcaacttcgtcctcccctacaagtccgagatcaccaataaggaggt 167 |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 232 accgtcaacttcgtcctcccctacaagtccgagatcgccaacaaggaggt 281
>gb|AC124966.33| Medicago truncatula clone mth2-8i15, complete sequence Length = 121141 Score = 75.8 bits (38), Expect = 2e-10 Identities = 134/166 (80%) Strand = Plus / Plus Query: 164 aggttgatatggtaatggtaccggctacaactggcctgatgggtattttgccaggccatg 223 |||||||| ||||||| | || || ||||| |||| ||||||||| | ||||| |||| Sbjct: 89761 aggttgatctggtaataatcccagccacaacaggccagatgggtatcctcccaggacatg 89820 Query: 224 tttccacaattgcagagctcaagcctggtgttatgtctgtacacgagggaaatgatgtta 283 |||| |||||||||||| | || ||||| || ||| |||||| || || |||||| | Sbjct: 89821 tttcaacaattgcagagttgaaacctggggtcatgattgtacaagaagggaatgattcga 89880 Query: 284 caaagtactttgtgagcagtggctttgcattcatccatgcaaactc 329 | ||||| ||||| ||||||||||| || ||| ||||||||||||| Sbjct: 89881 ccaagtattttgtaagcagtggcttcgctttcgtccatgcaaactc 89926
>dbj|D10660.1|IPBF1ATP Sweet potato mitochondrial F1-ATPase delta subunit mRNA, complete cds Length = 936 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 227 ccacaattgcagagctcaagcctggtgttatgtctgtacacgagggaaatgatgttacaa 286 |||| ||||| ||||| ||||||||||| ||||| || ||||| || |||||||| | | Sbjct: 408 ccacgattgctgagctgaagcctggtgtcatgtcggttcacgaaggtaatgatgtgtcca 467 Query: 287 agtactttgtgagcagtggctttgcattcatccatgcaaa 326 | ||||||||||| | ||||| || |||||||||||||| Sbjct: 468 aatactttgtgagtggcggcttcgctttcatccatgcaaa 507 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 98 cctccatcccatctaagctcaccgtcaacttcgtcct 134 |||||||||| || |||||||||||||| |||||||| Sbjct: 279 cctccatcccctccaagctcaccgtcaatttcgtcct 315
>gb|BT014114.1| Lycopersicon esculentum clone 133218F, mRNA sequence Length = 937 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 229 acaattgcagagctcaagcctggtgttatgtctgtacacgagggaaatgatgttacaaag 288 |||||||| ||||| ||||||||| || | || || |||||||| |||||||| | ||| Sbjct: 421 acaattgctgagctgaagcctggtattttatcagttcacgagggcaatgatgtgaacaag 480 Query: 289 tactttgtgagcagtggctttgcatt 314 ||||||||||| |||| |||||||| Sbjct: 481 tactttgtgagtggtggatttgcatt 506
>gb|BT018156.1| Zea mays clone EL01N0556B05.c mRNA sequence Length = 429 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 404 ctgaattcactgccaagcttggatcagcctcgactgacctaaagaaggcggaagctcaga 463 |||||||| || |||||||||| | |||| | |||||| ||||||| || || || | Sbjct: 19 ctgaattccctcccaagcttggtttggcctttaatgacctggagaaggctgaggcccaaa 78 Query: 464 tcggagtggatgttcacagtgcgctcaatgctgcattg 501 ||||||| ||||||| |||||| | ||||||||||||| Sbjct: 79 tcggagtcgatgttcccagtgcccccaatgctgcattg 116
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 gccccgcccgcccacgccggcc 99 |||||||||||||||||||||| Sbjct: 808304 gccccgcccgcccacgccggcc 808283
>gb|L13320.1|PEAATPASE Pisum sativum F1-ATPase delta-prime subunit gene, complete cds Length = 3009 Score = 44.1 bits (22), Expect = 0.55 Identities = 61/74 (82%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtggctttgcattcatccatgcaaactccattactgatgttgtg 345 ||||| ||||| ||||||||||| ||||||||| |||||||| || ||||| || | Sbjct: 2593 aagtattttgtaagcagtggcttccgattcatccacgcaaactctgttgctgatattatt 2652 Query: 346 gctgttgaggctgt 359 ||||| |||||||| Sbjct: 2653 gctgtagaggctgt 2666
>ref|XM_520988.1| PREDICTED: Pan troglodytes similar to radixin (LOC465550), mRNA Length = 649 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 266 cttgctgaattcactgccaag 286
>ref|XM_522176.1| PREDICTED: Pan troglodytes similar to radixin (LOC466776), mRNA Length = 1788 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1297 cttgctgaattcactgccaag 1317
>ref|NM_204751.1| Gallus gallus radixin (RDX), mRNA Length = 2179 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1497 cttgctgaattcactgccaag 1517
>ref|NM_002906.3| Homo sapiens radixin (RDX), mRNA Length = 4498 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1571 cttgctgaattcactgccaag 1591
>emb|AJ249838.1|GGA249838 Gallus gallus mRNA for radixin (rdx gene) Length = 2179 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1497 cttgctgaattcactgccaag 1517
>ref|NM_174259.2| Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA Length = 2948 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 ttgaagcctgcaaactcaatg 585 ||||||||||||||||||||| Sbjct: 2032 ttgaagcctgcaaactcaatg 2012
>ref|XM_857605.1| PREDICTED: Canis familiaris similar to radixin, transcript variant 6 (LOC479446), mRNA Length = 2006 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1401 cttgctgaattcactgccaag 1421
>ref|XM_536581.2| PREDICTED: Canis familiaris similar to radixin, transcript variant 1 (LOC479446), mRNA Length = 2065 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1344 cttgctgaattcactgccaag 1364
>gb|BC047109.1| Homo sapiens radixin, mRNA (cDNA clone MGC:48283 IMAGE:5284438), complete cds Length = 4412 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1471 cttgctgaattcactgccaag 1491
>emb|AL137751.1|HSM802383 Homo sapiens mRNA; cDNA DKFZp434I0812 (from clone DKFZp434I0812); partial cds Length = 3658 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 728 cttgctgaattcactgccaag 748
>gb|AC092318.2| Homo sapiens chromosome 5 clone RPCI-1_86A12, complete sequence Length = 91803 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 ttaaataaattatactccatc 628 ||||||||||||||||||||| Sbjct: 39922 ttaaataaattatactccatc 39942
>gb|M86444.1|PIGMOESB Sus scrofa moesin B mRNA, complete cds Length = 2320 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1471 cttgctgaattcactgccaag 1491
>ref|NM_001009576.1| Sus scrofa moesin B (RDX), mRNA Length = 2320 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1471 cttgctgaattcactgccaag 1491
>gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Human BAC Library) complete sequence Length = 185638 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 102665 cttgctgaattcactgccaag 102685
>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete sequences Length = 203521 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tgaggatggagggaatgatct 608 ||||||||||||||||||||| Sbjct: 39596 tgaggatggagggaatgatct 39616
>emb|BX648536.1|HSM808684 Homo sapiens mRNA; cDNA DKFZp779D2226 (from clone DKFZp779D2226) Length = 3215 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 287 cttgctgaattcactgccaag 307
>gb|AF221129.1|AF221129 Bos taurus micromolar calcium-dependent neutral protease large subunit (CAPN1) mRNA, complete cds Length = 2948 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 ttgaagcctgcaaactcaatg 585 ||||||||||||||||||||| Sbjct: 2032 ttgaagcctgcaaactcaatg 2012
>gb|AC004021.1|AC004021 Human PAC clone RP1-186K10 from 5q31, complete sequence Length = 171370 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 ttaaataaattatactccatc 628 ||||||||||||||||||||| Sbjct: 156908 ttaaataaattatactccatc 156928
>emb|CT573324.3| CH251-10E6, complete sequence Length = 169419 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 98862 cttgctgaattcactgccaag 98882
>dbj|AP000901.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-686G14, complete sequence Length = 205903 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 87956 cttgctgaattcactgccaag 87936
>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tgaggatggagggaatgatct 608 ||||||||||||||||||||| Sbjct: 234301 tgaggatggagggaatgatct 234321
>gb|L02320.1|HUMRADIXIN Human radixin mRNA, complete cds Length = 2022 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cttgctgaattcactgccaag 420 ||||||||||||||||||||| Sbjct: 1291 cttgctgaattcactgccaag 1311
>dbj|AB021794.1| Pyrus pyrifolia PPFRU36 mRNA for F1-ATPase, partial cds Length = 435 Score = 42.1 bits (21), Expect = 2.2 Identities = 60/73 (82%) Strand = Plus / Plus Query: 298 agcagtggctttgcattcatccatgcaaactccattactgatgttgtggctgttgaggct 357 |||||||| |||||||||||||| || ||||| ||| | || | | ||||| |||||| Sbjct: 19 agcagtggttttgcattcatccacgcgaactctattgcagacataattgctgtagaggct 78 Query: 358 gtcccccttgatc 370 ||||| ||||||| Sbjct: 79 gtccctcttgatc 91
>dbj|AP000228.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone:R49K20, complete sequence Length = 75698 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tgaggatggagggaatgatct 608 ||||||||||||||||||||| Sbjct: 27803 tgaggatggagggaatgatct 27823
>dbj|AP000140.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone B2291C14-R44F3, segment 5/10, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tgaggatggagggaatgatct 608 ||||||||||||||||||||| Sbjct: 33597 tgaggatggagggaatgatct 33617
>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region, segment 5/7 Length = 161014 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tgaggatggagggaatgatct 608 ||||||||||||||||||||| Sbjct: 33597 tgaggatggagggaatgatct 33617
>gb|AE006312.1| Lactococcus lactis subsp. lactis IL1403 section 74 of 218 of the complete genome Length = 10348 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ctcaatgctgcattgactgg 506 |||||||||||||||||||| Sbjct: 5955 ctcaatgctgcattgactgg 5936
>emb|CR377226.19| Zebrafish DNA sequence from clone DKEY-120I4 in linkage group 8, complete sequence Length = 173122 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cccttgatcagattgaccaa 381 |||||||||||||||||||| Sbjct: 26456 cccttgatcagattgaccaa 26475
>emb|CR711892.2|CNS0GC8W Tetraodon nigroviridis full-length cDNA Length = 721 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 353 aagtactttgtgagcagtgg 372
>emb|CR717757.2|CNS0GGRN Tetraodon nigroviridis full-length cDNA Length = 681 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 344 aagtactttgtgagcagtgg 363
>emb|CR704896.2|CNS0G6UK Tetraodon nigroviridis full-length cDNA Length = 1001 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 336 aagtactttgtgagcagtgg 355
>emb|CR678047.2|CNS0FM52 Tetraodon nigroviridis full-length cDNA Length = 680 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 314 aagtactttgtgagcagtgg 333
>emb|CR677999.2|CNS0FM3R Tetraodon nigroviridis full-length cDNA Length = 689 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 324 aagtactttgtgagcagtgg 343
>emb|CR671359.2|CNS0FGZP Tetraodon nigroviridis full-length cDNA Length = 675 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 314 aagtactttgtgagcagtgg 333
>emb|CR670662.2|CNS0FGGC Tetraodon nigroviridis full-length cDNA Length = 706 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 346 aagtactttgtgagcagtgg 365
>emb|CR665129.2|CNS0FC6N Tetraodon nigroviridis full-length cDNA Length = 696 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 328 aagtactttgtgagcagtgg 347
>emb|CR661561.2|CNS0F9FJ Tetraodon nigroviridis full-length cDNA Length = 671 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 328 aagtactttgtgagcagtgg 347
>emb|CR658320.2|CNS0F6XI Tetraodon nigroviridis full-length cDNA Length = 691 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 326 aagtactttgtgagcagtgg 345
>emb|CR655014.2|CNS0F4DO Tetraodon nigroviridis full-length cDNA Length = 711 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 345 aagtactttgtgagcagtgg 364
>emb|CR639459.2|CNS0ESDL Tetraodon nigroviridis full-length cDNA Length = 724 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 358 aagtactttgtgagcagtgg 377
>emb|CR638072.2|CNS0ERB2 Tetraodon nigroviridis full-length cDNA Length = 729 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 361 aagtactttgtgagcagtgg 380
>emb|CR632495.2|CNS0EN05 Tetraodon nigroviridis full-length cDNA Length = 712 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 344 aagtactttgtgagcagtgg 363
>emb|CR631144.2|CNS0ELYL Tetraodon nigroviridis full-length cDNA Length = 712 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 344 aagtactttgtgagcagtgg 363
>emb|CR632369.2|CNS0EMWN Tetraodon nigroviridis full-length cDNA Length = 712 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 344 aagtactttgtgagcagtgg 363
>emb|CR632349.2|CNS0EMW3 Tetraodon nigroviridis full-length cDNA Length = 710 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 344 aagtactttgtgagcagtgg 363
>emb|CR632195.2|CNS0EMRT Tetraodon nigroviridis full-length cDNA Length = 711 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 344 aagtactttgtgagcagtgg 363
>emb|CR631831.2|CNS0EMHP Tetraodon nigroviridis full-length cDNA Length = 702 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aagtactttgtgagcagtgg 305 |||||||||||||||||||| Sbjct: 333 aagtactttgtgagcagtgg 352
>emb|BX248419.4| Human DNA sequence from clone DASS-254G14 on chromosome 6, complete sequence Length = 122321 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 81131 ttacattttgatgttctttt 81150
>emb|AL844220.3| Human DNA sequence from clone DAQB-44E15 on chromosome 6 Contains the TRIM10 gene for tripartite motif-containing 10, the TRIM15 gene for tripartite motif-containing 15, the TRIM26 gene for tripartite motif-containing 26, the PAIP1P1 pseudogene for poly(A) binding protein interacting protein 1 pseudogene 1, the HCG17 gene for HLA complex group 17, the TRIM26P pseudogene for tripartite motif-containing 26, the HLA-L pseudogene for major histocompatibility complex, class I, L, the 3' end of the HCG18 gene for HLA complex group 18 and 3 CpG islands, complete sequence Length = 152298 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 97551 ttacattttgatgttctttt 97570
>emb|AL662832.5| Human DNA sequence from clone XXbac-141O14 on chromosome 6 contains the 5' end of the TRIM26 gene for tripartite motif containing 26, two putative novel transcript, a tripartite motif containing 26 (TRIM26) pseudogene, a MHC class 1 pseudogene, the TRIM39 gene for tripartite motif containing 39, the RPP21 gene for ribonuclease p subunit and four CpG islands, complete sequence Length = 161348 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 57046 ttacattttgatgttctttt 57065
>emb|AL662782.3| Human DNA sequence from clone XXbac-252N6 on chromosome 6 contains a putative novel transcript, a tripartite motif containing 26 (TRIM26) pseudogene, a MHC class 1 pseudogene and two CpG islands, complete sequence Length = 62456 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 40335 ttacattttgatgttctttt 40354
>emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I10 on chromosome 6q16.1-16.3 Contains a novel gene, complete sequence Length = 160750 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 catcttacattttgatgttc 537 |||||||||||||||||||| Sbjct: 130801 catcttacattttgatgttc 130820
>emb|AL023287.1|SPBC23E6 S.pombe chromosome II cosmid c23E6 Length = 34486 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 tgatgttgtggctgttgaggctgt 359 ||||||||| |||||||||||||| Sbjct: 27512 tgatgttgttgctgttgaggctgt 27489
>emb|AJ536587.1|MGL536587 Marthasterias glacialis partial mRNA for extracellular signal-regulated protein kinase (erk gene) Length = 1247 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tcatccatgcaaactccatt 333 |||||||||||||||||||| Sbjct: 344 tcatccatgcaaactccatt 363
>emb|CR388382.5| Human DNA sequence from clone DADB-23P23 on chromosome 6, complete sequence Length = 109067 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 85345 ttacattttgatgttctttt 85364
>gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158591 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 atgatcttaaataaattata 621 |||||||||||||||||||| Sbjct: 14123 atgatcttaaataaattata 14142
>emb|AL672026.11| Mouse DNA sequence from clone RP23-403O11 on chromosome X, complete sequence Length = 200566 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 gacagacatcttacattttgatgt 535 ||||||||| |||||||||||||| Sbjct: 109303 gacagacatattacattttgatgt 109326 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 gacagacatcttacattttgatgt 535 ||||||||| |||||||||||||| Sbjct: 72215 gacagacatattacattttgatgt 72192
>gb|AC073565.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-70F21, complete sequence Length = 180673 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tccagaaaggtcttgctgaa 408 |||||||||||||||||||| Sbjct: 15810 tccagaaaggtcttgctgaa 15829
>ref|NM_001022530.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC23E6.09), partial mRNA Length = 3309 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 tgatgttgtggctgttgaggctgt 359 ||||||||| |||||||||||||| Sbjct: 551 tgatgttgttgctgttgaggctgt 528
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 attttgatgttcttttcatc 545 |||||||||||||||||||| Sbjct: 18401901 attttgatgttcttttcatc 18401920
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 ctccattactgatgttgtgg 346 |||||||||||||||||||| Sbjct: 29804324 ctccattactgatgttgtgg 29804305
>emb|BX927189.6| Human DNA sequence from clone DAMA-83L10 on chromosome 6, complete sequence Length = 124330 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 52560 ttacattttgatgttctttt 52579
>gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175833 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 atgatcttaaataaattata 621 |||||||||||||||||||| Sbjct: 153312 atgatcttaaataaattata 153293
>gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, complete sequence Length = 185668 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 tcttttcatctacatcttta 555 |||||||||||||||||||| Sbjct: 119098 tcttttcatctacatcttta 119117
>gb|AC079181.3|AC079181 Mus musculus strain C57BL/6J chromosome 12 clone RP23-197F8, complete sequence Length = 209058 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tccagaaaggtcttgctgaa 408 |||||||||||||||||||| Sbjct: 197539 tccagaaaggtcttgctgaa 197558
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 ctccattactgatgttgtgg 346 |||||||||||||||||||| Sbjct: 48419 ctccattactgatgttgtgg 48400
>gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6, complete sequence Length = 191557 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 aaattatactccatctcaaa 633 |||||||||||||||||||| Sbjct: 169074 aaattatactccatctcaaa 169055
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 1695644 ttacattttgatgttctttt 1695625
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 attttgatgttcttttcatc 545 |||||||||||||||||||| Sbjct: 116637 attttgatgttcttttcatc 116656
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 attttgatgttcttttcatc 545 |||||||||||||||||||| Sbjct: 63775 attttgatgttcttttcatc 63794
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 1238109 ttacattttgatgttctttt 1238090
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tccagaaaggtcttgctgaa 408 |||||||||||||||||||| Sbjct: 1200437 tccagaaaggtcttgctgaa 1200456
>gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene, complete cds Length = 2757 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 attttgatgttcttttcatc 545 |||||||||||||||||||| Sbjct: 645 attttgatgttcttttcatc 664
>emb|AL162511.5|CNS01RHV Human chromosome 14 DNA sequence BAC R-259K15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165126 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tgcaaactccattactgatg 340 |||||||||||||||||||| Sbjct: 88197 tgcaaactccattactgatg 88178
>gb|AC004191.1|AC004191 Homo sapiens clone UWGC:y18c296 from 6p21, complete sequence Length = 45601 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 21957 ttacattttgatgttctttt 21938
>dbj|AB023053.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:53L9, complete sequence Length = 14868 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttacattttgatgttctttt 541 |||||||||||||||||||| Sbjct: 3929 ttacattttgatgttctttt 3910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,669,914 Number of Sequences: 3902068 Number of extensions: 5669914 Number of successful extensions: 117725 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117386 Number of HSP's gapped (non-prelim): 328 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)