ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal9l20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1233 bits (622), Expect = 0.0 Identities = 656/662 (99%), Gaps = 4/662 (0%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggc 59 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1653 gcaatcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggc 1594 Query: 60 atgcttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttc 118 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1593 atgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttc 1534 Query: 119 ttggcattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctccttt 177 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1533 ttggcattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctccttt 1474 Query: 178 acctcctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaa 236 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1473 acctcctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaa 1414 Query: 237 ggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 ggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 1354 Query: 297 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 1294 Query: 357 tagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagtt 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 tagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagtt 1234 Query: 417 caccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatc 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1233 caccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatc 1174 Query: 477 gtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1173 gtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 1114 Query: 537 gacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagac 596 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1113 gacgatctttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagac 1054 Query: 597 accgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggat 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 accgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggat 994 Query: 657 ca 658 || Sbjct: 993 ca 992
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 1023 bits (516), Expect = 0.0 Identities = 629/664 (94%), Gaps = 7/664 (1%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaaacatcagatattaaaa 54 ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| Sbjct: 724 gcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatattaaat 665 Query: 55 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 114 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 664 -tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaa 606 Query: 115 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 174 |||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| || Sbjct: 605 gttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccc 546 Query: 175 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtag 234 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 545 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtag 486 Query: 235 aaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 294 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 aaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 426 Query: 295 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 366 Query: 355 tctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 414 |||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 365 tctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgag 306 Query: 415 ttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 474 ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 305 ttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctcg 246 Query: 475 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 534 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 245 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgggaaggtg 186 Query: 535 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 594 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 185 tcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacccttgcag 126 Query: 595 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacgg 654 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 acaccgatacggtcgtcgcgggtgggagcccagtagaacttctccatacgaccatcacgg 66 Query: 655 atca 658 |||| Sbjct: 65 atca 62
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1023 bits (516), Expect = 0.0 Identities = 629/664 (94%), Gaps = 7/664 (1%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaaacatcagatattaaaa 54 ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| Sbjct: 1574 gcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatattaaat 1515 Query: 55 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 114 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 1514 -tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaa 1456 Query: 115 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 174 |||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| || Sbjct: 1455 gttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccc 1396 Query: 175 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtag 234 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1395 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtag 1336 Query: 235 aaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 294 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1335 aaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 1276 Query: 295 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1275 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 1216 Query: 355 tctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 414 |||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 1215 tctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgag 1156 Query: 415 ttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 474 ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 1155 ttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctcg 1096 Query: 475 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 534 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1095 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgggaaggtg 1036 Query: 535 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 594 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1035 tcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacccttgcag 976 Query: 595 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacgg 654 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 975 acaccgatacggtcgtcgcgggtgggagcccagtagaacttctccatacgaccatcacgg 916 Query: 655 atca 658 |||| Sbjct: 915 atca 912
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 839 bits (423), Expect = 0.0 Identities = 429/431 (99%) Strand = Plus / Minus Query: 228 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 288 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 348 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 408 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 468 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868 Query: 528 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 587 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 867 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808 Query: 588 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 748 Query: 648 atcacggatca 658 ||||||||||| Sbjct: 747 atcacggatca 737 Score = 357 bits (180), Expect = 3e-95 Identities = 180/180 (100%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1344 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 1285 Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 1225 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1224 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 815 bits (411), Expect = 0.0 Identities = 557/605 (92%), Gaps = 2/605 (0%) Strand = Plus / Minus Query: 52 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 111 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 112 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 171 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 172 tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 231 ||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350 Query: 232 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 291 |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290 Query: 292 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 351 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230 Query: 352 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 411 ||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170 Query: 412 gagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacc 471 |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 1169 gagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcgcacc 1110 Query: 472 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 531 ||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 1109 tcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgggaan 1050 Query: 532 gtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttg 591 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 1049 gtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacccttg 990 Query: 592 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 651 ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| ||| Sbjct: 989 cagacgccgatacggtcctcgcgggtgggcgcccagtagaacttctccatacgaccgtca 930 Query: 652 cggat 656 ||||| Sbjct: 929 cggat 925
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 178 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 238 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 298 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 358 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 418 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 478 tcgtacacccgagcacgcagagcaccgaaaaagtc 512 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 361 bits (182), Expect = 2e-96 Identities = 182/182 (100%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7704 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 7645 Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7644 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 7585 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7584 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525 Query: 181 tc 182 || Sbjct: 7524 tc 7523 Score = 291 bits (147), Expect = 1e-75 Identities = 147/147 (100%) Strand = Plus / Minus Query: 512 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 572 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 632 acttctccatacgaccatcacggatca 658 ||||||||||||||||||||||||||| Sbjct: 6760 acttctccatacgaccatcacggatca 6734 Score = 139 bits (70), Expect = 1e-29 Identities = 172/206 (83%) Strand = Plus / Minus Query: 453 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 512 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 513 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 572 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 573 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 632 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 633 cttctccatacgaccatcacggatca 658 ||||||||| || || |||||||||| Sbjct: 3632 cttctccatgcgcccgtcacggatca 3607 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 304 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 363 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 364 ttctcgactgtcatctttggctgctcgaa 392 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 579 bits (292), Expect = e-162 Identities = 388/420 (92%) Strand = Plus / Minus Query: 228 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 287 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 288 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 347 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 348 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 407 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 408 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 467 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 468 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 527 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064 Query: 528 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 587 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004 Query: 588 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 647 ||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct: 1003 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaacttctccatacgacc 944 Score = 176 bits (89), Expect = 6e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 52 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 111 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 112 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 171 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 172 tcctttacc 180 ||||||||| Sbjct: 1369 tcctttacc 1361
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 206 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 265 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 266 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 326 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 386 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 445 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 446 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 505 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 506 aaaagtc 512 ||||||| Sbjct: 8 aaaagtc 2
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 907 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 906 tccatacgcccgtcacggat 887 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 902 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 901 tccatacgcccgtcacggat 882 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 229 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 288 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 289 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 348 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 349 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 408 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 409 cgcgagttcaccagcctcttgccaatgttctc 440 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 156 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 155 tccatacgcccgtcacggat 136 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 950 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 949 tccatacgcccgtcacggat 930 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 177 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 178 acctcctcct 187 ||||||||| Sbjct: 1443 ccctcctcct 1434
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 901 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 900 tccatacgcccgtcacggat 881 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 177 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 178 acctcctcct 187 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 939 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 938 tccatacgcccgtcacggat 919 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 177 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 178 acctcctcct 187 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 938 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 937 tccatacgcccgtcacggat 918 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 177 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 178 acctcctcct 187 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 722 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 721 tccatacgcccgtcacggat 702 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 177 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 178 acctcctcct 187 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 943 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 942 tccatacgcccgtcacggat 923 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 121 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 177 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 178 acctcctcct 187 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 227 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 286 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 287 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 346 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 347 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 406 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 407 cccgcgagttcaccagcctcttgccaatgttctc 440 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 517 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 576 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 577 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 636 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 937 Query: 637 tccatacgaccatcacggat 656 |||||||| || |||||||| Sbjct: 936 tccatacgcccgtcacggat 917 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 229 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 288 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 289 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 348 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 349 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 408 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 409 cgcgagttcaccagcctcttgccaatgttctc 440 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 170 bits (86), Expect = 4e-39 Identities = 275/338 (81%) Strand = Plus / Minus Query: 304 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 363 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 364 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 423 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 424 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 483 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 484 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 543 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 544 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 603 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 604 cggtcgtcacgggtgggagcccagtagaacttctccat 641 ||||| || |||||||| |||||||||||||||||||| Sbjct: 942 cggtcctcccgggtgggcgcccagtagaacttctccat 905
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 514 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 573 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 574 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 633 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 634 ttctccatacgaccatcacggat 656 ||||||||||| || |||||||| Sbjct: 108808 ttctccatacgcccgtcacggat 108830 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 224 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 283 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 284 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 343 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 344 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 403 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 404 cgtcccgcgagttcaccagcctcttgccaatgttctc 440 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 112515 Query: 638 ccat 641 |||| Sbjct: 112516 ccat 112519 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 79 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 138 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 139 accttccggcacggg 153 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 506 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 412 gagttcaccagcctcttgccaatgttctc 440 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 514 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 573 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 574 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 633 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 634 ttctccatacgaccatcacggat 656 ||||||||||| || |||||||| Sbjct: 30685 ttctccatacgcccgtcacggat 30707 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 224 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 283 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 284 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 343 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 344 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 403 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 404 cgtcccgcgagttcaccagcctcttgccaatgttctc 440 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 34392 Query: 638 ccat 641 |||| Sbjct: 34393 ccat 34396 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 79 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 138 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 139 accttccggcacggg 153 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 506 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 412 gagttcaccagcctcttgccaatgttctc 440 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 514 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 573 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 574 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 633 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 634 ttctccatacgaccatcacggat 656 ||||||||||| || |||||||| Sbjct: 28303947 ttctccatacgcccgtcacggat 28303969 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 224 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 283 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 284 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 343 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 344 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 403 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 404 cgtcccgcgagttcaccagcctcttgccaatgttctc 440 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28307654 Query: 638 ccat 641 |||| Sbjct: 28307655 ccat 28307658 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 79 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 138 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 139 accttccggcacggg 153 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 506 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 412 gagttcaccagcctcttgccaatgttctc 440 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 514 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 573 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 574 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 633 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 634 ttctccatacgaccatcacggat 656 ||||||||||| || |||||||| Sbjct: 28286396 ttctccatacgcccgtcacggat 28286418 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 224 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 283 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 284 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 343 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 344 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 403 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 404 cgtcccgcgagttcaccagcctcttgccaatgttctc 440 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28290103 Query: 638 ccat 641 |||| Sbjct: 28290104 ccat 28290107 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 79 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 138 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 139 accttccggcacggg 153 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 506 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 412 gagttcaccagcctcttgccaatgttctc 440 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 139 bits (70), Expect = 1e-29 Identities = 172/206 (83%) Strand = Plus / Minus Query: 453 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 512 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 513 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 572 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 573 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 632 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 633 cttctccatacgaccatcacggatca 658 ||||||||| || || |||||||||| Sbjct: 1063 cttctccatgcgcccgtcacggatca 1038 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 304 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 363 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 364 ttctcgactgtcatctttggctgctcgaa 392 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 131 bits (66), Expect = 3e-27 Identities = 135/158 (85%) Strand = Plus / Minus Query: 499 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 558 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 559 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 618 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 619 ggagcccagtagaacttctccatacgaccatcacggat 656 |||||||||||||||||||||||||||||||||||||| Sbjct: 1044 ggagcccagtagaacttctccatacgaccatcacggat 1007
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 225 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 284 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 285 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 344 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 345 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 404 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 405 gtcccgcgagttcaccagcctcttgcc 431 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 459 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 518 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 519 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 578 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 594 Query: 639 catacgaccatcacggat 656 ||||||||| |||||||| Sbjct: 593 catacgaccgtcacggat 576 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 71 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 130 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 131 tcggtgcaaccttc 144 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 1074 catacgtccatcacggat 1057
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 1074 catacgtccatcacggat 1057
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 1103 catacgtccatcacggat 1086
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 985 catacgtccatcacggat 968
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 901 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 900 catacgtccatcacggat 883
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Plus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 14213 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 14214 catacgtccatcacggat 14231
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 988 catacgtccatcacggat 971
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 978 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 977 catacgtccatcacggat 960
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 985 catacgtccatcacggat 968
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 988 catacgtccatcacggat 971
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 459 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 518 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 519 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 578 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 895 Query: 639 catacgaccatcacggat 656 ||||||||| |||||||| Sbjct: 894 catacgaccgtcacggat 877 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 225 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 284 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 285 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 344 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 345 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 404 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 405 gtcccgcgagttcaccagcctctt 428 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 71 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 130 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 131 tcggtgcaaccttc 144 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 459 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 518 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 519 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 578 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 758 Query: 639 catacgaccatcacggat 656 ||||||||| |||||||| Sbjct: 757 catacgaccgtcacggat 740 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 232 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 291 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 292 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 351 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 352 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 411 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 412 gagttcaccagcctctt 428 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 71 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 130 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 131 tcggtgcaaccttc 144 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 459 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 518 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 519 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 578 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 788 Query: 639 catacgaccatcacggat 656 ||||||||| |||||||| Sbjct: 787 catacgaccgtcacggat 770 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 232 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 291 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 292 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 351 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 352 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 411 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 412 gagttcaccagcctcttgcc 431 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 71 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 130 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 131 tcggtgcaaccttc 144 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 1103 catacgtccatcacggat 1086
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 123 bits (62), Expect = 8e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 3070 Query: 639 catacgaccatcacggat 656 |||||| ||||||||||| Sbjct: 3069 catacgtccatcacggat 3052
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 67 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 126 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 127 ttggtcggtgcaaccttccggcacgggca 155 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 113 bits (57), Expect = 7e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 592 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 651 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 2754 Query: 652 cggat 656 ||||| Sbjct: 2753 cggat 2749
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 113 bits (57), Expect = 7e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 592 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 651 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 1126 Query: 652 cggat 656 ||||| Sbjct: 1125 cggat 1121 Score = 44.1 bits (22), Expect = 0.58 Identities = 58/70 (82%) Strand = Plus / Minus Query: 472 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 531 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 532 gtgtcgacga 541 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 97.6 bits (49), Expect = 4e-17 Identities = 142/173 (82%) Strand = Plus / Minus Query: 469 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 528 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 529 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 588 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 589 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 641 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccat 511 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 233 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 292 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 293 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 352 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 353 actctagcagcttctcgactgtcatctttggctgctcgaa 392 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 564 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 623 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 624 ccagtagaacttctccatacgaccatcacggat 656 ||||||||| ||||||||||||||||||||||| Sbjct: 188 ccagtagaatttctccatacgaccatcacggat 156
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 95.6 bits (48), Expect = 2e-16 Identities = 81/92 (88%) Strand = Plus / Minus Query: 565 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 624 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 625 cagtagaacttctccatacgaccatcacggat 656 |||||||| || |||||||||||||||||||| Sbjct: 983 cagtagaatttttccatacgaccatcacggat 952 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 253 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 302 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 233 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 292 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 293 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 352 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 353 actctagcagcttctcgactgtcatctttggctgctcgaa 392 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Minus Query: 469 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 528 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 529 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 588 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 589 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 641 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccat 906
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 233 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 292 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 293 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 352 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 353 actctagcagcttctcgactgtcatctttggctgctcgaa 392 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttct 910 Query: 638 ccat 641 |||| Sbjct: 909 ccat 906
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 89.7 bits (45), Expect = 1e-14 Identities = 153/189 (80%) Strand = Plus / Minus Query: 468 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 527 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 528 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 587 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 588 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 647 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 342 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 283 Query: 648 atcacggat 656 ||||||||| Sbjct: 282 atcacggat 274
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 590 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 649 |||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaatttctccatacgaccat 84 Query: 650 cacggat 656 ||||||| Sbjct: 83 cacggat 77
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 475 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 534 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 535 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 594 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 595 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 641 || ||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgtccat 452
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 590 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 649 ||||||| || ||||| || || ||||||||||||||||||||||||||||||||||| | Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaacttctccatacgaccgt 975 Query: 650 cacggat 656 ||||||| Sbjct: 974 cacggat 968 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 261 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 320 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 321 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 380 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 381 tggctgctcgaa 392 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 44.1 bits (22), Expect = 0.58 Identities = 64/78 (82%) Strand = Plus / Minus Query: 459 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 518 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 519 ttgtcctgggaaggtgtc 536 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 589 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 648 ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||| ||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaatttctccatacggcca 960 Query: 649 tcacggat 656 |||||||| Sbjct: 959 tcacggat 952 Score = 40.1 bits (20), Expect = 9.0 Identities = 68/84 (80%) Strand = Plus / Minus Query: 262 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 321 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 322 ttgtcctgctcctggacgagcatg 345 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 250 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 309 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 310 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 365 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 590 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 649 |||||||||| ||||| || || | || ||||||||||||||||||||||||||||||| Sbjct: 456 tgcagacaccaatacgatcttctctagtaggagcccagtagaacttctccatacgaccat 397 Query: 650 cacggat 656 ||||||| Sbjct: 396 cacggat 390 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Minus Query: 457 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 516 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 517 gattgtcctgggaaggtgtcgacgatcttgac 548 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 469 ccatgcgcccgtcacggat 451
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 475 ccatgcgcccgtcacggat 457
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 77.8 bits (39), Expect = 4e-11 Identities = 135/167 (80%) Strand = Plus / Minus Query: 475 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 534 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 535 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 594 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 595 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 641 || ||||| ||||| || |||||||| |||||||||||||| ||||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaacttgtccat 460
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 638 ccatacgaccatcacggat 656 |||| || || |||||||| Sbjct: 473 ccatgcgcccgtcacggat 455
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 61 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 120 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 121 ggcattttggtcggtgcaaccttccggcacgggca 155 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 813 Query: 639 catacgaccatcacg 653 ||||||||||||||| Sbjct: 812 catacgaccatcacg 798
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 579 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 638 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 986 Query: 639 catacgaccatcacg 653 ||||||||||||||| Sbjct: 985 catacgaccatcacg 971
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 571 tcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtag 630 |||||| |||| || |||||||| ||||| || ||||| || | || || ||||||||| Sbjct: 1042 tcggtccggaaaattcccttgcaaacaccaatgcggtcttcccttgttggtgcccagtag 983 Query: 631 aacttctccatacgaccatcacggat 656 |||||||||||||||||||||||||| Sbjct: 982 aacttctccatacgaccatcacggat 957
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 73.8 bits (37), Expect = 6e-10 Identities = 151/189 (79%) Strand = Plus / Minus Query: 468 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 527 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 1106 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 1047 Query: 528 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 587 |||||| ||||| ||||| | || | || ||| || ||||||||| ||| ||||| Sbjct: 1046 gaaggtatcgacaatctttataacggcttcctcaggcacgttgtcggtcctgaaaatacc 987 Query: 588 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 647 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 986 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 927 Query: 648 atcacggat 656 ||||||||| Sbjct: 926 atcacggat 918
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 638 ccat 641 |||| Sbjct: 473 ccat 470
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccat 641 |||| Sbjct: 471 ccat 468
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 638 ccat 641 |||| Sbjct: 469 ccat 466
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 638 ccat 641 |||| Sbjct: 469 ccat 466
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 638 ccat 641 |||| Sbjct: 471 ccat 468
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 578 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 637 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 638 ccat 641 |||| Sbjct: 475 ccat 472
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 622 gcccagtagaacttctccatacgaccatcacggat 656 ||||||||||||||||||||||||||||||||||| Sbjct: 222 gcccagtagaacttctccatacgaccatcacggat 188 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 499 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 548 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 69.9 bits (35), Expect = 1e-08 Identities = 74/87 (85%) Strand = Plus / Minus Query: 570 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 629 ||||||| ||| ||||| ||||| ||||||||||||||||| | || || |||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtccctagttggtgcccagta 794 Query: 630 gaacttctccatacgaccatcacggat 656 || |||||||||||||| |||||||| Sbjct: 793 aaatttctccatacgaccgtcacggat 767 Score = 48.1 bits (24), Expect = 0.037 Identities = 54/64 (84%) Strand = Plus / Minus Query: 478 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 537 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 538 acga 541 |||| Sbjct: 885 acga 882
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 622 gcccagtagaacttctccatacgaccatcacggat 656 ||||||||||||||||||||||||||||||||||| Sbjct: 963 gcccagtagaacttctccatacgaccatcacggat 929
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 622 gcccagtagaacttctccatacgaccatcacggat 656 ||||||||||||||||||||||||||||||||||| Sbjct: 982 gcccagtagaacttctccatacgaccatcacggat 948
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 495 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 536 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 565 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 624 |||||||||||| ||| ||||| |||| |||||||| | || || | |||||| ||| Sbjct: 1043 acattgtcggtcctgaaaatacctgtgcaaacaccgatcctatcttccctggtgggtgcc 984 Query: 625 cagtagaacttctccatacgaccatcacggat 656 ||||| ||||||||||||||||| |||||||| Sbjct: 983 cagtaaaacttctccatacgaccgtcacggat 952
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 576 ctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 635 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||| |||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggggttccagtagtactt 1802 Query: 636 ctccatacgaccatcacggat 656 |||||| || || |||||||| Sbjct: 1801 ctccatgcggccgtcacggat 1781 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 agctgcacacgcttgacattgtcctgctc 332 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 570 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 629 ||||||| ||| ||||| ||||| ||||||| ||||||||| | || || |||||||| Sbjct: 852 gtcggtcctgaaaatacctttgcaaacaccgacacggtcgtccctagttggtgcccagta 793 Query: 630 gaacttctccatacgaccatcacggat 656 || |||||||||||||| |||||||| Sbjct: 792 aaatttctccatacgaccgtcacggat 766 Score = 48.1 bits (24), Expect = 0.037 Identities = 54/64 (84%) Strand = Plus / Minus Query: 478 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 537 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 538 acga 541 |||| Sbjct: 884 acga 881
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 622 gcccagtagaacttctccatacgaccatcacggat 656 ||||||||||| ||||||||||||||||||||||| Sbjct: 999 gcccagtagaatttctccatacgaccatcacggat 965 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 495 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 548 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 475 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 534 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 535 tc 536 || Sbjct: 2663 tc 2662
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 619 ggagcccagtagaacttctccatacgaccatcacggat 656 ||||||||||||||||| |||||||||||||| ||||| Sbjct: 419 ggagcccagtagaacttttccatacgaccatcgcggat 382
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 475 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 534 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 535 tc 536 || Sbjct: 973 tc 972
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 622 gcccagtagaacttctccatacgaccatcacg 653 ||||||||||||||||||||||| |||||||| Sbjct: 995 gcccagtagaacttctccatacgcccatcacg 964
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 624 ccagtagaacttctccatacgaccatcacggatca 658 ||||||||||||||||||||| |||||||| |||| Sbjct: 678 ccagtagaacttctccatacgcccatcacgaatca 644
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 458 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 517 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 518 attgtcctgggaaggtgtcgac 539 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 601 atacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacg 653 ||||| || ||||| || |||||||||||||| || ||||| ||||||||||| Sbjct: 1018 atacgatcttcacgagttggagcccagtagaatttatccatccgaccatcacg 966
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/67 (86%), Gaps = 4/67 (5%) Strand = Plus / Minus Query: 592 cagacaccgatacggtcgtcacgggtgggagcccagt--agaacttctccatacgaccat 649 ||||||||||||||||| |||||||| | | ||||| |||||||||||||||| |||| Sbjct: 1016 cagacaccgatacggtcttcacgggtcg--ggccagtcaagaacttctccatacgtccat 959 Query: 650 cacggat 656 || |||| Sbjct: 958 caaggat 952
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 607 tcgtcacgggtgggagcccagtagaacttctccatacgaccatcacg 653 |||||||| || || ||||||||||| || |||||||| |||||||| Sbjct: 6892 tcgtcacgagtaggtgcccagtagaatttttccatacgtccatcacg 6938
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 catcacccagagctgcctggct 287 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 gggaaggtgtcgacgatcttg 546 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 aaacatcagatattaaaagtg 57 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 atgcagcaagagatggtgggt 208 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 aaacatcagatattaaaagtg 57 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 aaacatcagatattaaaagtg 57 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 576 ctggaagatacccttgcagacacc 599 ||||| |||||||||||||||||| Sbjct: 67288 ctggatgatacccttgcagacacc 67265
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cctttacctcctcctatgca 192 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cctttacctcctcctatgca 192 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cctttacctcctcctatgca 192 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gtcagcaagctgcacacgct 316 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 ttgacgacagactcgtcact 563 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tcagatattaaaagtggcat 61 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tcagatattaaaagtggcat 61 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tcagatattaaaagtggcat 61 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 622 gcccagtagaacttctccatacgaccatcacg 653 ||||| ||||| |||||||||||||| ||||| Sbjct: 103825 gcccaatagaatttctccatacgaccgtcacg 103856
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 622 gcccagtagaacttctccatacgaccatcacg 653 ||||| ||||| |||||||||||||| ||||| Sbjct: 82850 gcccaatagaatttctccatacgaccgtcacg 82881
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 ttgacattgtcctgctcctg 335 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 70 ggtgtaaaggcagctgccgtcgtcgctc 97 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cctttacctcctcctatgca 192 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tggcatgcttaaaaggtgta 75 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 acaccgatacggtcgtcacg 614 |||||||||||||||||||| Sbjct: 3056308 acaccgatacggtcgtcacg 3056327
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 ttgacattgtcctgctcctg 335 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 catcacccagagctgcctggctca 289 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 cttgctgtgctcctttacctcctc 185 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cctttacctcctcctatgca 192 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 atcagatattaaaagtggcatgct 64 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,158,231 Number of Sequences: 3902068 Number of extensions: 4158231 Number of successful extensions: 74520 Number of sequences better than 10.0: 127 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74040 Number of HSP's gapped (non-prelim): 413 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
