ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009602.1| Triticum aestivum clone wre1n.pk0080.f8:fis, full... 930 0.0
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
3dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
4dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
5ref|XM_482632.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-25
6ref|XM_507247.1| PREDICTED Oryza sativa (japonica cultivar-group... 125 2e-25
7dbj|AK102411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
8dbj|AK071719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
9dbj|AK059843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
11dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
12dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
13gb|AY106301.1| Zea mays PCO140890 mRNA sequence 76 1e-10
14dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 4e-08
15ref|NM_112728.2| Arabidopsis thaliana calcium ion binding AT3G18... 42 2.0
16gb|AE004159.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 2.0
17gb|AY091287.1| Arabidopsis thaliana unknown protein (At3g18430) ... 42 2.0
18gb|AY063789.1| Arabidopsis thaliana unknown protein (At3g18430) ... 42 2.0
19gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, comp... 42 2.0
20emb|BX825707.1|CNS0A51F Arabidopsis thaliana Full-length cDNA Co... 42 2.0
21gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, co... 42 2.0
22gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, com... 42 2.0
23gb|AY087152.1| Arabidopsis thaliana clone 32274 mRNA, complete s... 42 2.0
24dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 42 2.0
25dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.0
26emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chr... 42 2.0
27gb|M15540.1|STMAMYHY S.hygroscopicus alpha-amylase gene, complet... 42 2.0
28gb|AC161474.4| Pan troglodytes BAC clone CH251-488B17 from chrom... 40 8.0
29gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, com... 40 8.0
30gb|AC146002.2| Pan troglodytes BAC clone RP43-153B17 from 7, com... 40 8.0
31gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complet... 40 8.0
32emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chr... 40 8.0
33gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, comp... 40 8.0
34gb|U39674.1| Caenorhabditis elegans cosmid C06E2, complete sequence 40 8.0
35gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, com... 40 8.0
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
37gb|DQ027001.1| Homo sapiens ribonucleotide reductase M2 B (TP53 ... 40 8.0
38dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.0
39gb|AE004726.1| Pseudomonas aeruginosa PAO1, section 287 of 529 o... 40 8.0
40dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
41dbj|AP002907.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.0 
>gb|BT009602.1| Triticum aestivum clone wre1n.pk0080.f8:fis, full insert mRNA
           sequence
          Length = 899

 Score =  930 bits (469), Expect = 0.0
 Identities = 535/557 (96%), Gaps = 5/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 35  agaggggagggccagtcgtcggaggagcagatcgacgggggaggcttcccggcgatacga 94
           |||||||||||| ||||||||  ||||||||||||| ||| |||| ||||||||||    
Sbjct: 9   agaggggagggcgagtcgtcgtcggagcagatcgaccgggtaggcctcccggcgat---- 64

                                                                       
Query: 95  tggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgca 154
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 65  -ggggaacgcgtcgtcgatgctgacgcagtacgacatcgaggaggtgcaggagcactgca 123

                                                                       
Query: 155 gctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgacc 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgacc 183

                                                                       
Query: 215 gcagcgccaagggcttcgtcgccgaggacgagttcctctccatcccggagtactccacca 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gcagcgccaagggcttcgtcgccgaggacgagttcctctccatcccggagtactccacca 243

                                                                       
Query: 275 acccgctctcccagaggttgctacgtatggttgatggattgaacttcaaggaatttgttt 334
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acccgctctcccagaggctgctacgtatggttgatggattgaacttcaaggaatttgttt 303

                                                                       
Query: 335 cgtttctctctaccttcagcacaagggccagctttcagcaaaagattgagttgatgttta 394
           | |||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||
Sbjct: 304 cttttctctctaccttcagcgcaagggccagccttcagcaaaagattgagttcatattta 363

                                                                       
Query: 395 aggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggttttac 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggttttac 423

                                                                       
Query: 455 gggacctaacgggctcatccatgtcagagcaacaaagagagcaagtactaacaaaggtgt 514
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 424 gggacctaacgggctcatccatgtcagagaaacaaagagagcaagtactaacaaaggtgt 483

                                                                       
Query: 515 tggaagaagctgggtacacacgggattccactctatcattagaagattttgtgacgatca 574
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tggaagaagctgggtatacacgggattccactctatcattagaagattttgtgacgatca 543

                            
Query: 575 tcgaccaccctggcctg 591
           ||| |||| ||||||||
Sbjct: 544 tcggccacactggcctg 560
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  170 bits (86), Expect = 3e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                            
Query: 164      tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccgcagcgcca 223
                |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 34227967 tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctggatcggagcgcca 34227908

                                                                            
Query: 224      agggcttcgtcgccgaggacgagttcctctccatcccggagtactccaccaacccgctct 283
                |||| ||| || |||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 34227907 aggggttcatctccgaggacgagttcctctccatcccggagttctccctcaacccgctct 34227848

                  
Query: 284      cc 285
                ||
Sbjct: 34227847 cc 34227846



 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                            
Query: 394      aaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggtttta 453
                ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 34226890 aaggtgtatgacattgatggcaaggggaaggtaaccttcaaagacctggtagaggttttg 34226831

                                                          
Query: 454      cgggacctaacgggctcatccatgtcagagcaacaaagagag 495
                ||||||| ||| || |||| |||| ||||| |||||||||||
Sbjct: 34226830 cgggaccaaacagggtcattcatgacagaggaacaaagagag 34226789



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                            
Query: 287      agaggttgctacgtatggttgatggattgaacttcaaggaatttgtttcgtttctctcta 346
                |||||||||| ||||||||||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 34227115 agaggttgctgcgtatggttgatgggctgaacttcaaggattttgtttccttcctctcta 34227056

                                                       
Query: 347      ccttcagcacaagggccagctttcagcaaaagattgagt 385
                |||||||  ||| ||||||| ||||||||||||||||||
Sbjct: 34227055 ccttcagtgcaaaggccagcgttcagcaaaagattgagt 34227017



 Score =  103 bits (52), Expect = 6e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                            
Query: 94       atggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgc 153
                ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 34228140 atggggaacgcgtcgtcgatgctcacccagtacgacatcgaggaggtgcaggagcactgc 34228081

                        
Query: 154      agctacct 161
                | ||||||
Sbjct: 34228080 aactacct 34228073



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 498      agtactaacaaaggtgttggaagaagctgggtacacacgggattccactctatcattaga 557
                |||| ||||||| ||  ||||||||||||| |||||| |||||| ||| || || || ||
Sbjct: 34226070 agtaataacaaatgtactggaagaagctggatacacaagggattgcacgctttctttgga 34226011

                       
Query: 558      agatttt 564
                |||||||
Sbjct: 34226010 agatttt 34226004
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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0032L17
          Length = 165808

 Score =  170 bits (86), Expect = 3e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                          
Query: 164    tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccgcagcgcca 223
              |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 155481 tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctggatcggagcgcca 155422

                                                                          
Query: 224    agggcttcgtcgccgaggacgagttcctctccatcccggagtactccaccaacccgctct 283
              |||| ||| || |||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 155421 aggggttcatctccgaggacgagttcctctccatcccggagttctccctcaacccgctct 155362

                
Query: 284    cc 285
              ||
Sbjct: 155361 cc 155360



 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                          
Query: 394    aaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggtttta 453
              ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 154404 aaggtgtatgacattgatggcaaggggaaggtaaccttcaaagacctggtagaggttttg 154345

                                                        
Query: 454    cgggacctaacgggctcatccatgtcagagcaacaaagagag 495
              ||||||| ||| || |||| |||| ||||| |||||||||||
Sbjct: 154344 cgggaccaaacagggtcattcatgacagaggaacaaagagag 154303



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                          
Query: 287    agaggttgctacgtatggttgatggattgaacttcaaggaatttgtttcgtttctctcta 346
              |||||||||| ||||||||||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 154629 agaggttgctgcgtatggttgatgggctgaacttcaaggattttgtttccttcctctcta 154570

                                                     
Query: 347    ccttcagcacaagggccagctttcagcaaaagattgagt 385
              |||||||  ||| ||||||| ||||||||||||||||||
Sbjct: 154569 ccttcagtgcaaaggccagcgttcagcaaaagattgagt 154531



 Score =  103 bits (52), Expect = 6e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                          
Query: 94     atggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgc 153
              ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 155654 atggggaacgcgtcgtcgatgctcacccagtacgacatcgaggaggtgcaggagcactgc 155595

                      
Query: 154    agctacct 161
              | ||||||
Sbjct: 155594 aactacct 155587



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                          
Query: 498    agtactaacaaaggtgttggaagaagctgggtacacacgggattccactctatcattaga 557
              |||| ||||||| ||  ||||||||||||| |||||| |||||| ||| || || || ||
Sbjct: 153584 agtaataacaaatgtactggaagaagctggatacacaagggattgcacgctttctttgga 153525

                     
Query: 558    agatttt 564
              |||||||
Sbjct: 153524 agatttt 153518
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>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0689B12
          Length = 154745

 Score =  170 bits (86), Expect = 3e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                         
Query: 164   tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccgcagcgcca 223
             |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 63240 tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctggatcggagcgcca 63181

                                                                         
Query: 224   agggcttcgtcgccgaggacgagttcctctccatcccggagtactccaccaacccgctct 283
             |||| ||| || |||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 63180 aggggttcatctccgaggacgagttcctctccatcccggagttctccctcaacccgctct 63121

               
Query: 284   cc 285
             ||
Sbjct: 63120 cc 63119



 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                         
Query: 394   aaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggtttta 453
             ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 62163 aaggtgtatgacattgatggcaaggggaaggtaaccttcaaagacctggtagaggttttg 62104

                                                       
Query: 454   cgggacctaacgggctcatccatgtcagagcaacaaagagag 495
             ||||||| ||| || |||| |||| ||||| |||||||||||
Sbjct: 62103 cgggaccaaacagggtcattcatgacagaggaacaaagagag 62062



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                         
Query: 287   agaggttgctacgtatggttgatggattgaacttcaaggaatttgtttcgtttctctcta 346
             |||||||||| ||||||||||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 62388 agaggttgctgcgtatggttgatgggctgaacttcaaggattttgtttccttcctctcta 62329

                                                    
Query: 347   ccttcagcacaagggccagctttcagcaaaagattgagt 385
             |||||||  ||| ||||||| ||||||||||||||||||
Sbjct: 62328 ccttcagtgcaaaggccagcgttcagcaaaagattgagt 62290



 Score =  103 bits (52), Expect = 6e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 94    atggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgc 153
             ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 63413 atggggaacgcgtcgtcgatgctcacccagtacgacatcgaggaggtgcaggagcactgc 63354

                     
Query: 154   agctacct 161
             | ||||||
Sbjct: 63353 aactacct 63346



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                         
Query: 498   agtactaacaaaggtgttggaagaagctgggtacacacgggattccactctatcattaga 557
             |||| ||||||| ||  ||||||||||||| |||||| |||||| ||| || || || ||
Sbjct: 61343 agtaataacaaatgtactggaagaagctggatacacaagggattgcacgctttctttgga 61284

                    
Query: 558   agatttt 564
             |||||||
Sbjct: 61283 agatttt 61277
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>ref|XM_482632.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 952

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 93  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 137 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 196

                                                                       
Query: 153 cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 212
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 197 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 256

              
Query: 213 ccg 215
           |||
Sbjct: 257 ccg 259
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>ref|XM_507247.1| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.47-1
           mRNA
          Length = 1005

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 93  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 224 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 283

                                                                       
Query: 153 cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 212
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 284 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 343

              
Query: 213 ccg 215
           |||
Sbjct: 344 ccg 346
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>dbj|AK102411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092P05, full
           insert sequence
          Length = 951

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 93  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 136 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 195

                                                                       
Query: 153 cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 212
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 196 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 255

              
Query: 213 ccg 215
           |||
Sbjct: 256 ccg 258
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>dbj|AK071719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108H11, full
           insert sequence
          Length = 3643

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 93  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 218 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 277

                                                                       
Query: 153 cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 212
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 278 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 337

              
Query: 213 ccg 215
           |||
Sbjct: 338 ccg 340
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>dbj|AK059843.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D12, full
           insert sequence
          Length = 1005

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 93  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 224 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 283

                                                                       
Query: 153 cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 212
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 284 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 343

              
Query: 213 ccg 215
           |||
Sbjct: 344 ccg 346
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                    
Query: 164      tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 215
                ||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 21545207 tctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcgaccg 21545258



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 93       gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
                |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 21545012 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 21545071

                 
Query: 153      c 153
                |
Sbjct: 21545072 c 21545072
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>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0528B09
          Length = 156897

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                  
Query: 164    tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 215
              ||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 149202 tctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcgaccg 149253



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 93     gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
              |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 149007 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 149066

               
Query: 153    c 153
              |
Sbjct: 149067 c 149067
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0708B04
          Length = 170523

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                
Query: 164  tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 215
            ||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 5381 tctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcgaccg 5432



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                        
Query: 93   gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 152
            |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 5186 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 5245

             
Query: 153  c 153
            |
Sbjct: 5246 c 5246
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>gb|AY106301.1| Zea mays PCO140890 mRNA sequence
          Length = 812

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                 
Query: 162 attctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 215
           ||||||||||||||||||||| ||||||||| | || |||||||||||||||||
Sbjct: 106 attctcgcagcaggagatcgtatcgctgtaccaccgcttctgccagctcgaccg 159
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>dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H02, full
            insert sequence
          Length = 2604

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                        
Query: 479  cagagcaacaaagagagcaagtactaacaaaggtgttggaagaagctgggtacacacggg 538
            ||||| |||||||||||| |||| ||||||| ||  ||||||||||||| |||||| |||
Sbjct: 2215 cagaggaacaaagagagcgagtaataacaaatgtactggaagaagctggatacacaaggg 2274

                                      
Query: 539  attccactctatcattagaagatttt 564
            ||| ||| || || || |||||||||
Sbjct: 2275 attgcacgctttctttggaagatttt 2300
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>ref|NM_112728.2| Arabidopsis thaliana calcium ion binding AT3G18430 mRNA, complete
           cds
          Length = 784

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 301 atggttgatggattgaacttcaaggaatttgtt 333
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 308 atggttgatggtttgaactttaaggattttgtt 340
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>gb|AE004159.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 67
            of 251 of the complete chromosome
          Length = 13190

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 293  tgctacgtatggttgatggattgaacttc 321
            |||||||||||||||||| | ||||||||
Sbjct: 7833 tgctacgtatggttgatgcactgaacttc 7805
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>gb|AY091287.1| Arabidopsis thaliana unknown protein (At3g18430) mRNA, complete cds
          Length = 559

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 301 atggttgatggattgaacttcaaggaatttgtt 333
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 208 atggttgatggtttgaactttaaggattttgtt 240
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>gb|AY063789.1| Arabidopsis thaliana unknown protein (At3g18430) mRNA, complete cds
          Length = 730

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 301 atggttgatggattgaacttcaaggaatttgtt 333
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 303 atggttgatggtttgaactttaaggattttgtt 335
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>gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, complete sequence
          Length = 191786

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 480    agagcaacaaagagagcaagt 500
              |||||||||||||||||||||
Sbjct: 126901 agagcaacaaagagagcaagt 126921
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>emb|BX825707.1|CNS0A51F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL58ZB04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 693

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 301 atggttgatggattgaacttcaaggaatttgtt 333
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 273 atggttgatggtttgaactttaaggattttgtt 305
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>gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, complete sequence
          Length = 148883

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     agggagagaggggagggccag 49
              |||||||||||||||||||||
Sbjct: 117907 agggagagaggggagggccag 117887
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>gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, complete sequence
          Length = 175519

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    agggagagaggggagggccag 49
             |||||||||||||||||||||
Sbjct: 33470 agggagagaggggagggccag 33450
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>gb|AY087152.1| Arabidopsis thaliana clone 32274 mRNA, complete sequence
          Length = 776

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 301 atggttgatggattgaacttcaaggaatttgtt 333
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 308 atggttgatggtttgaactttaaggattttgtt 340
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 274   aacccgctctcccagaggttg 294
             |||||||||||||||||||||
Sbjct: 32405 aacccgctctcccagaggttg 32385
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>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24
          Length = 88989

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 301   atggttgatggattgaacttcaaggaatttgtt 333
             ||||||||||| |||||||| ||||| ||||||
Sbjct: 44678 atggttgatggtttgaactttaaggattttgtt 44710
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>emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chromosome 2, complete
             sequence
          Length = 178976

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   caggagcactgcagctaccta 162
             |||||||||||||||||||||
Sbjct: 58816 caggagcactgcagctaccta 58796
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>gb|M15540.1|STMAMYHY S.hygroscopicus alpha-amylase gene, complete cds
          Length = 1842

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 213  ccgcagcgccaagggcttcgtcgcc 237
            |||||||| ||||||||||||||||
Sbjct: 1409 ccgcagcgacaagggcttcgtcgcc 1433
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>gb|AC161474.4| Pan troglodytes BAC clone CH251-488B17 from chromosome 7, complete
              sequence
          Length = 191529

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 514    ttggaagaagctgggtacac 533
              ||||||||||||||||||||
Sbjct: 152749 ttggaagaagctgggtacac 152768
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>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   agagcaacaaagagagcaag 499
             ||||||||||||||||||||
Sbjct: 41629 agagcaacaaagagagcaag 41610
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>gb|AC146002.2| Pan troglodytes BAC clone RP43-153B17 from 7, complete sequence
          Length = 169542

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 514    ttggaagaagctgggtacac 533
              ||||||||||||||||||||
Sbjct: 131462 ttggaagaagctgggtacac 131481
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>gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complete sequence
          Length = 144165

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    ttggaagaagctgggtacac 533
              ||||||||||||||||||||
Sbjct: 137149 ttggaagaagctgggtacac 137130
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>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two
             novel genes and three putative novel pseudogenes, complete
             sequence
          Length = 189319

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ggattgaacttcaaggaatt 329
             ||||||||||||||||||||
Sbjct: 85445 ggattgaacttcaaggaatt 85464
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>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence
          Length = 176916

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    agagcaacaaagagagcaag 499
              ||||||||||||||||||||
Sbjct: 163790 agagcaacaaagagagcaag 163809
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>gb|U39674.1| Caenorhabditis elegans cosmid C06E2, complete sequence
          Length = 47743

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 563   ttgtgacgatcatcgaccac 582
             ||||||||||||||||||||
Sbjct: 43044 ttgtgacgatcatcgaccac 43063
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>gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, complete sequence
          Length = 220215

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   atgtttaaggtgtatgacat 407
             ||||||||||||||||||||
Sbjct: 71652 atgtttaaggtgtatgacat 71671
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ggaggagcagatcgacgggg 74
               ||||||||||||||||||||
Sbjct: 4504537 ggaggagcagatcgacgggg 4504518
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>gb|DQ027001.1| Homo sapiens ribonucleotide reductase M2 B (TP53 inducible) (RRM2B)
             gene, complete cds
          Length = 37983

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   atgtttaaggtgtatgacat 407
             ||||||||||||||||||||
Sbjct: 14508 atgtttaaggtgtatgacat 14527
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     cgaggacgagttcctctcca 256
               ||||||||||||||||||||
Sbjct: 2936848 cgaggacgagttcctctcca 2936867
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>gb|AE004726.1| Pseudomonas aeruginosa PAO1, section 287 of 529 of the complete
            genome
          Length = 10681

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  cgccaagggcttcgtcgccg 238
            ||||||||||||||||||||
Sbjct: 8144 cgccaagggcttcgtcgccg 8125
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>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1046_F10
          Length = 118472

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ggaggagcagatcgacgggg 74
             ||||||||||||||||||||
Sbjct: 83256 ggaggagcagatcgacgggg 83237
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>dbj|AP002907.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB431C1
          Length = 98146

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   atgtttaaggtgtatgacat 407
             ||||||||||||||||||||
Sbjct: 47946 atgtttaaggtgtatgacat 47927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,564,155
Number of Sequences: 3902068
Number of extensions: 4564155
Number of successful extensions: 97593
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97310
Number of HSP's gapped (non-prelim): 277
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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