| Clone Name | bags14l17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104024.1| Zea mays PCO092230 mRNA sequence Length = 1569 Score = 226 bits (114), Expect = 4e-56 Identities = 306/371 (82%) Strand = Plus / Plus Query: 37 gctggacgcgcccaacctagacgattacctccccgcggactcgctcccgcaggaaccccc 96 ||||||| ||| ||||| || || |||||||| | ||||||||||||||||| | || Sbjct: 125 gctggaccggccaaacctggaggactacctcccgcccgactcgctcccgcaggaggcgcc 184 Query: 97 caggactctcaccctgcgcgatcttntggacatctcgccagtgctcaccgaggcagcggg 156 | ||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 185 ccggaatctccatctgcgcgatctgctggacatctcgccggtgctcaccgaggcagcggg 244 Query: 157 tgccatcgtcgatgattcattcacacgttgcttcaagncaaattctncggagccatggaa 216 |||||| |||||||| || |||||||| ||||| ||| |||||||| | ||||||||||| Sbjct: 245 tgccattgtcgatgactccttcacacggtgctttaagtcaaattctccagagccatggaa 304 Query: 217 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 276 |||||||| || ||||||| ||||||||||| || ||||| |||||||||||| | || Sbjct: 305 ttggaacatatatctgttccccttatggtgctttggtgtagtaataagatatggaatact 364 Query: 277 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggccttttt 336 || || || |||| |||||| |||| | |||||||| | || || ||| | |||||||| Sbjct: 365 cttcccactgaggtccttaacgcttgcaataggatggttagcattttttgctgccttttt 424 Query: 337 tcccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 396 ||| || ||||||||| |||| ||| || | ||| | | ||||||||| ||||| ||| | Sbjct: 425 tcctgtccatttcctattgaaagggcaagacaagttgagaagtaaaattgagaggaagtt 484 Query: 397 ggttgaaatga 407 ||||||||||| Sbjct: 485 ggttgaaatga 495
>ref|XM_478533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1413 Score = 222 bits (112), Expect = 7e-55 Identities = 306/371 (82%), Gaps = 3/371 (0%) Strand = Plus / Plus Query: 37 gctggacgcgcccaacctagacgattacctccccgcggactcgctcccgcaggaaccccc 96 ||||||| ||| ||||| || || |||||||| | |||||||| |||||||| ||| Sbjct: 77 gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136 Query: 97 caggactctcaccctgcgcgatcttntggacatctcgccagtgctcaccgaggcagcggg 156 ||||| |||| ||||||||||| ||||||||||||| |||||||| || || ||||| Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196 Query: 157 tgccatcgtcgatgattcattcacacgttgcttcaagncaaattctncggagccatggaa 216 |||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||| Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256 Query: 217 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 276 |||||||| || || |||||||| ||||||||||||||||| |||||||| ||| | || Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagatacggaatact 316 Query: 277 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggccttttt 336 || ||||| ||| | |||| ||| || | |||||| | || |||||| | |||||||| Sbjct: 317 attcccgctgaggggcctaactcttctagttggatggttagcattctttgctgccttttt 376 Query: 337 tcccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 396 ||| || |||||| || |||| || || ||| | | ||||||||||||||||||||| Sbjct: 377 tcctgtacatttcttattgaaaggtcaa---aagatgagaagtaaaatagagagaaagct 433 Query: 397 ggttgaaatga 407 ||||||||||| Sbjct: 434 ggttgaaatga 444
>dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G01, full insert sequence Length = 1413 Score = 222 bits (112), Expect = 7e-55 Identities = 306/371 (82%), Gaps = 3/371 (0%) Strand = Plus / Plus Query: 37 gctggacgcgcccaacctagacgattacctccccgcggactcgctcccgcaggaaccccc 96 ||||||| ||| ||||| || || |||||||| | |||||||| |||||||| ||| Sbjct: 77 gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136 Query: 97 caggactctcaccctgcgcgatcttntggacatctcgccagtgctcaccgaggcagcggg 156 ||||| |||| ||||||||||| ||||||||||||| |||||||| || || ||||| Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196 Query: 157 tgccatcgtcgatgattcattcacacgttgcttcaagncaaattctncggagccatggaa 216 |||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||| Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256 Query: 217 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 276 |||||||| || || |||||||| ||||||||||||||||| |||||||| ||| | || Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagatacggaatact 316 Query: 277 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggccttttt 336 || ||||| ||| | |||| ||| || | |||||| | || |||||| | |||||||| Sbjct: 317 attcccgctgaggggcctaactcttctagttggatggttagcattctttgctgccttttt 376 Query: 337 tcccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 396 ||| || |||||| || |||| || || ||| | | ||||||||||||||||||||| Sbjct: 377 tcctgtacatttcttattgaaaggtcaa---aagatgagaagtaaaatagagagaaagct 433 Query: 397 ggttgaaatga 407 ||||||||||| Sbjct: 434 ggttgaaatga 444
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 119 bits (60), Expect = 7e-24 Identities = 88/98 (89%) Strand = Plus / Minus Query: 170 gattcattcacacgttgcttcaagncaaattctncggagccatggaactggaacatctac 229 |||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||| || Sbjct: 20757689 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 20757630 Query: 230 ttgttcccattatggtgcttgggagtagtcataagata 267 || |||||||| ||||||||||||||||| |||||||| Sbjct: 20757629 ttattcccattgtggtgcttgggagtagtgataagata 20757592 Score = 63.9 bits (32), Expect = 4e-07 Identities = 52/59 (88%) Strand = Plus / Minus Query: 112 gcgcgatcttntggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 170 ||||||||| ||||||||||||| |||||||| || || ||||| ||||||||||||| Sbjct: 20758616 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 20758558 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 agagaaagctggttgaaatga 407 ||||||||||||||||||||| Sbjct: 20756894 agagaaagctggttgaaatga 20756874
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 119 bits (60), Expect = 7e-24 Identities = 88/98 (89%) Strand = Plus / Minus Query: 170 gattcattcacacgttgcttcaagncaaattctncggagccatggaactggaacatctac 229 |||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||| || Sbjct: 110439 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 110380 Query: 230 ttgttcccattatggtgcttgggagtagtcataagata 267 || |||||||| ||||||||||||||||| |||||||| Sbjct: 110379 ttattcccattgtggtgcttgggagtagtgataagata 110342 Score = 63.9 bits (32), Expect = 4e-07 Identities = 52/59 (88%) Strand = Plus / Minus Query: 112 gcgcgatcttntggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 170 ||||||||| ||||||||||||| |||||||| || || ||||| ||||||||||||| Sbjct: 111366 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 111308 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 agagaaagctggttgaaatga 407 ||||||||||||||||||||| Sbjct: 109644 agagaaagctggttgaaatga 109624
>gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence Length = 1444 Score = 71.9 bits (36), Expect = 2e-09 Identities = 73/86 (84%) Strand = Plus / Plus Query: 170 gattcattcacacgttgcttcaagncaaattctncggagccatggaactggaacatctac 229 ||||| ||||| || ||||||||| ||||| | | || || ||||||||||||||||| Sbjct: 265 gattctttcacccgatgcttcaagtcaaatccaccagaaccttggaactggaacatctat 324 Query: 230 ttgttcccattatggtgcttgggagt 255 ||||| || ||||||||||||||||| Sbjct: 325 ttgtttcctttatggtgcttgggagt 350
>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence Length = 210347 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 aaagtaaaatagagagaaagct 396 |||||||||||||||||||||| Sbjct: 201929 aaagtaaaatagagagaaagct 201950
>gb|AC155825.2| Mus musculus BAC clone RP23-54D15 from chromosome 16, complete sequence Length = 192183 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 ttttttcccgtgcatttcctaatga 356 ||||||||||||||||| ||||||| Sbjct: 121543 ttttttcccgtgcattttctaatga 121567
>ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 protein (LOC456875), mRNA Length = 4908 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cctccccgcggactcgctccc 84 ||||||||||||||||||||| Sbjct: 644 cctccccgcggactcgctccc 664
>gb|AC124818.7| Mus musculus chromosome 14, clone RP24-505E8, complete sequence Length = 159170 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 gctaaaaagtaaaatagagag 390 ||||||||||||||||||||| Sbjct: 132582 gctaaaaagtaaaatagagag 132602
>emb|AL157826.8| Human DNA sequence from clone RP11-176P17 on chromosome 9p22.3-24.1 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 149087 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 365 aataagctaaaaagtaaaatagagagaaa 393 |||||||| | |||||||||||||||||| Sbjct: 9357 aataagctgagaagtaaaatagagagaaa 9329
>dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C2000443, weakly similar to Acyl-CoA hydrolase Length = 2875 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cctccccgcggactcgctccc 84 ||||||||||||||||||||| Sbjct: 91 cctccccgcggactcgctccc 111
>ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LOC652284 (LOC652284), mRNA Length = 375 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cctccccgcggactcgctccc 84 ||||||||||||||||||||| Sbjct: 84 cctccccgcggactcgctccc 64
>ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LOC645442 (LOC645442), mRNA Length = 375 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cctccccgcggactcgctccc 84 ||||||||||||||||||||| Sbjct: 84 cctccccgcggactcgctccc 64
>gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, complete sequence Length = 132033 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cctccccgcggactcgctccc 84 ||||||||||||||||||||| Sbjct: 76734 cctccccgcggactcgctccc 76754
>emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 in linkage group 20, complete sequence Length = 161957 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 aaataagctaaaaagtaaaat 384 ||||||||||||||||||||| Sbjct: 10451 aaataagctaaaaagtaaaat 10431
>gb|AC154677.2| Mus musculus BAC clone RP24-299I4 from chromosome 14, complete sequence Length = 149259 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 gctaaaaagtaaaatagagag 390 ||||||||||||||||||||| Sbjct: 128467 gctaaaaagtaaaatagagag 128447
>ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 mRNA, complete cds Length = 1323 Score = 40.1 bits (20), Expect = 5.4 Identities = 90/114 (78%) Strand = Plus / Plus Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184 |||||||| ||| |||||| || || || |||||||| || ||||| || |||||| | Sbjct: 186 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 245 Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238 || ||||| ||||| || | || || ||||||||||| || ||||| |||||| Sbjct: 246 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 299
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24, complete sequence Length = 143425 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 acatctacttgttcccatta 241 |||||||||||||||||||| Sbjct: 57632 acatctacttgttcccatta 57651
>emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on chromosome 10 Contains two novel genes and a CpG island, complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgctgggagaagatggcgtc 33 |||||||||||||||||||| Sbjct: 78200 cgctgggagaagatggcgtc 78181
>emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H19 on chromosome 20q13.11-13.33 Contains ESTs, STSs, GSSs and a CpG island, complete sequence Length = 178473 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ccccccaggactctcaccct 111 |||||||||||||||||||| Sbjct: 18604 ccccccaggactctcaccct 18623
>gb|AF543849.1| Sesbania drummondii maturase-like protein (matK) gene, complete cds; chloroplast gene for chloroplast product Length = 1536 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 aaaaataagctaaaaagtaaaata 385 |||||||| ||||||||||||||| Sbjct: 1018 aaaaataacctaaaaagtaaaata 995
>emb|BX005300.5| Zebrafish DNA sequence from clone CH211-87G21, complete sequence Length = 110022 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 taaaaagtaaaatagagaga 391 |||||||||||||||||||| Sbjct: 31702 taaaaagtaaaatagagaga 31683
>gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complete sequence Length = 136197 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 aaaaataagctaaaaagtaaaata 385 |||||||| ||||||||||||||| Sbjct: 132495 aaaaataaactaaaaagtaaaata 132518
>gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein (At5g60620) mRNA, complete cds Length = 1162 Score = 40.1 bits (20), Expect = 5.4 Identities = 90/114 (78%) Strand = Plus / Plus Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184 |||||||| ||| |||||| || || || |||||||| || ||||| || |||||| | Sbjct: 136 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 195 Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238 || ||||| ||||| || | || || ||||||||||| || ||||| |||||| Sbjct: 196 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 249
>emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZH03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1276 Score = 40.1 bits (20), Expect = 5.4 Identities = 90/114 (78%) Strand = Plus / Plus Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184 |||||||| ||| |||||| || || || |||||||| || ||||| || |||||| | Sbjct: 176 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 235 Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238 || ||||| ||||| || | || || ||||||||||| || ||||| |||||| Sbjct: 236 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 289
>emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, complete sequence Length = 245924 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 taaaaagtaaaatagagaga 391 |||||||||||||||||||| Sbjct: 167389 taaaaagtaaaatagagaga 167408
>dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown protein, complete cds, clone: RAFL21-19-N13 Length = 1324 Score = 40.1 bits (20), Expect = 5.4 Identities = 90/114 (78%) Strand = Plus / Plus Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184 |||||||| ||| |||||| || || || |||||||| || ||||| || |||||| | Sbjct: 186 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 245 Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238 || ||||| ||||| || | || || ||||||||||| || ||||| |||||| Sbjct: 246 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 299
>gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, exon 1 Length = 452 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcgctggacgcgcccaacct 54 |||||||||||||||||||| Sbjct: 103 gcgctggacgcgcccaacct 122
>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence Length = 210088 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ggttcttaacacttgtacta 307 |||||||||||||||||||| Sbjct: 128612 ggttcttaacacttgtacta 128631 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,872,830 Number of Sequences: 3902068 Number of extensions: 2872830 Number of successful extensions: 55465 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55401 Number of HSP's gapped (non-prelim): 61 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)