ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14l17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY104024.1| Zea mays PCO092230 mRNA sequence 226 4e-56
2ref|XM_478533.1| Oryza sativa (japonica cultivar-group), mRNA 222 7e-55
3dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
5dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
6gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence 72 2e-09
7gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, comp... 44 0.35
8gb|AC155825.2| Mus musculus BAC clone RP23-54D15 from chromosome... 42 1.4
9ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 ... 42 1.4
10gb|AC124818.7| Mus musculus chromosome 14, clone RP24-505E8, com... 42 1.4
11emb|AL157826.8| Human DNA sequence from clone RP11-176P17 on chr... 42 1.4
12dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C20004... 42 1.4
13ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.4
14ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.4
15gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, compl... 42 1.4
16emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 ... 42 1.4
17gb|AC154677.2| Mus musculus BAC clone RP24-299I4 from chromosome... 42 1.4
18ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 ... 40 5.4
19emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 40 5.4
20emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on ch... 40 5.4
21emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H... 40 5.4
22gb|AF543849.1| Sesbania drummondii maturase-like protein (matK) ... 40 5.4
23emb|BX005300.5| Zebrafish DNA sequence from clone CH211-87G21, c... 40 5.4
24gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complet... 40 5.4
25gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein... 40 5.4
26emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Co... 40 5.4
27emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, c... 40 5.4
28dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown ... 40 5.4
29gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, ex... 40 5.4
30gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, comple... 40 5.4

>gb|AY104024.1| Zea mays PCO092230 mRNA sequence
          Length = 1569

 Score =  226 bits (114), Expect = 4e-56
 Identities = 306/371 (82%)
 Strand = Plus / Plus

                                                                       
Query: 37  gctggacgcgcccaacctagacgattacctccccgcggactcgctcccgcaggaaccccc 96
           |||||||  ||| ||||| || || ||||||||  | |||||||||||||||||  | ||
Sbjct: 125 gctggaccggccaaacctggaggactacctcccgcccgactcgctcccgcaggaggcgcc 184

                                                                       
Query: 97  caggactctcaccctgcgcgatcttntggacatctcgccagtgctcaccgaggcagcggg 156
           | ||| ||||   |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 185 ccggaatctccatctgcgcgatctgctggacatctcgccggtgctcaccgaggcagcggg 244

                                                                       
Query: 157 tgccatcgtcgatgattcattcacacgttgcttcaagncaaattctncggagccatggaa 216
           |||||| |||||||| || |||||||| ||||| ||| |||||||| | |||||||||||
Sbjct: 245 tgccattgtcgatgactccttcacacggtgctttaagtcaaattctccagagccatggaa 304

                                                                       
Query: 217 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 276
            |||||||| ||  ||||||| ||||||||||| || ||||| |||||||||||| | ||
Sbjct: 305 ttggaacatatatctgttccccttatggtgctttggtgtagtaataagatatggaatact 364

                                                                       
Query: 277 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggccttttt 336
            || || || |||| |||||| |||| | |||||||| | || || ||| | ||||||||
Sbjct: 365 cttcccactgaggtccttaacgcttgcaataggatggttagcattttttgctgccttttt 424

                                                                       
Query: 337 tcccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 396
           ||| || ||||||||| |||| ||| || | ||| | | ||||||||| ||||| ||| |
Sbjct: 425 tcctgtccatttcctattgaaagggcaagacaagttgagaagtaaaattgagaggaagtt 484

                      
Query: 397 ggttgaaatga 407
           |||||||||||
Sbjct: 485 ggttgaaatga 495



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>ref|XM_478533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1413

 Score =  222 bits (112), Expect = 7e-55
 Identities = 306/371 (82%), Gaps = 3/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 37  gctggacgcgcccaacctagacgattacctccccgcggactcgctcccgcaggaaccccc 96
           |||||||  ||| ||||| || || ||||||||  | |||||||| ||||||||   |||
Sbjct: 77  gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136

                                                                       
Query: 97  caggactctcaccctgcgcgatcttntggacatctcgccagtgctcaccgaggcagcggg 156
           ||||| ||||   |||||||||||  ||||||||||||| |||||||| || || |||||
Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196

                                                                       
Query: 157 tgccatcgtcgatgattcattcacacgttgcttcaagncaaattctncggagccatggaa 216
            |||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||||
Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256

                                                                       
Query: 217 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 276
            |||||||| || || |||||||| ||||||||||||||||| |||||||| ||| | ||
Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagatacggaatact 316

                                                                       
Query: 277 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggccttttt 336
            || ||||| |||  | |||| ||| || | |||||| | || |||||| | ||||||||
Sbjct: 317 attcccgctgaggggcctaactcttctagttggatggttagcattctttgctgccttttt 376

                                                                       
Query: 337 tcccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 396
           ||| || |||||| || |||| ||  ||   ||| | | |||||||||||||||||||||
Sbjct: 377 tcctgtacatttcttattgaaaggtcaa---aagatgagaagtaaaatagagagaaagct 433

                      
Query: 397 ggttgaaatga 407
           |||||||||||
Sbjct: 434 ggttgaaatga 444



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>dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G01, full
           insert sequence
          Length = 1413

 Score =  222 bits (112), Expect = 7e-55
 Identities = 306/371 (82%), Gaps = 3/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 37  gctggacgcgcccaacctagacgattacctccccgcggactcgctcccgcaggaaccccc 96
           |||||||  ||| ||||| || || ||||||||  | |||||||| ||||||||   |||
Sbjct: 77  gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136

                                                                       
Query: 97  caggactctcaccctgcgcgatcttntggacatctcgccagtgctcaccgaggcagcggg 156
           ||||| ||||   |||||||||||  ||||||||||||| |||||||| || || |||||
Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196

                                                                       
Query: 157 tgccatcgtcgatgattcattcacacgttgcttcaagncaaattctncggagccatggaa 216
            |||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||||
Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256

                                                                       
Query: 217 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 276
            |||||||| || || |||||||| ||||||||||||||||| |||||||| ||| | ||
Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagatacggaatact 316

                                                                       
Query: 277 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggccttttt 336
            || ||||| |||  | |||| ||| || | |||||| | || |||||| | ||||||||
Sbjct: 317 attcccgctgaggggcctaactcttctagttggatggttagcattctttgctgccttttt 376

                                                                       
Query: 337 tcccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 396
           ||| || |||||| || |||| ||  ||   ||| | | |||||||||||||||||||||
Sbjct: 377 tcctgtacatttcttattgaaaggtcaa---aagatgagaagtaaaatagagagaaagct 433

                      
Query: 397 ggttgaaatga 407
           |||||||||||
Sbjct: 434 ggttgaaatga 444



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 7e-24
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                            
Query: 170      gattcattcacacgttgcttcaagncaaattctncggagccatggaactggaacatctac 229
                |||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||| || 
Sbjct: 20757689 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 20757630

                                                      
Query: 230      ttgttcccattatggtgcttgggagtagtcataagata 267
                || |||||||| ||||||||||||||||| ||||||||
Sbjct: 20757629 ttattcccattgtggtgcttgggagtagtgataagata 20757592



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 112      gcgcgatcttntggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 170
                |||||||||  ||||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 20758616 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 20758558



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 387      agagaaagctggttgaaatga 407
                |||||||||||||||||||||
Sbjct: 20756894 agagaaagctggttgaaatga 20756874



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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0681F05
          Length = 144741

 Score =  119 bits (60), Expect = 7e-24
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                          
Query: 170    gattcattcacacgttgcttcaagncaaattctncggagccatggaactggaacatctac 229
              |||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||| || 
Sbjct: 110439 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 110380

                                                    
Query: 230    ttgttcccattatggtgcttgggagtagtcataagata 267
              || |||||||| ||||||||||||||||| ||||||||
Sbjct: 110379 ttattcccattgtggtgcttgggagtagtgataagata 110342



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                         
Query: 112    gcgcgatcttntggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 170
              |||||||||  ||||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 111366 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 111308



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    agagaaagctggttgaaatga 407
              |||||||||||||||||||||
Sbjct: 109644 agagaaagctggttgaaatga 109624



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>gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence
          Length = 1444

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 170 gattcattcacacgttgcttcaagncaaattctncggagccatggaactggaacatctac 229
           ||||| ||||| || ||||||||| ||||| |  | || || ||||||||||||||||| 
Sbjct: 265 gattctttcacccgatgcttcaagtcaaatccaccagaaccttggaactggaacatctat 324

                                     
Query: 230 ttgttcccattatggtgcttgggagt 255
           ||||| || |||||||||||||||||
Sbjct: 325 ttgtttcctttatggtgcttgggagt 350



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>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence
          Length = 210347

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 375    aaagtaaaatagagagaaagct 396
              ||||||||||||||||||||||
Sbjct: 201929 aaagtaaaatagagagaaagct 201950



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>gb|AC155825.2| Mus musculus BAC clone RP23-54D15 from chromosome 16, complete sequence
          Length = 192183

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 332    ttttttcccgtgcatttcctaatga 356
              ||||||||||||||||| |||||||
Sbjct: 121543 ttttttcccgtgcattttctaatga 121567



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>ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 protein (LOC456875),
           mRNA
          Length = 4908

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  cctccccgcggactcgctccc 84
           |||||||||||||||||||||
Sbjct: 644 cctccccgcggactcgctccc 664



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>gb|AC124818.7| Mus musculus chromosome 14, clone RP24-505E8, complete sequence
          Length = 159170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    gctaaaaagtaaaatagagag 390
              |||||||||||||||||||||
Sbjct: 132582 gctaaaaagtaaaatagagag 132602



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>emb|AL157826.8| Human DNA sequence from clone RP11-176P17 on chromosome 9p22.3-24.1
            Contains part of a variant of the PTPRD gene for protein
            tyrosine phosphatase, receptor type, D (HPTP, PTPD,
            HPTPD), complete sequence
          Length = 149087

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 365  aataagctaaaaagtaaaatagagagaaa 393
            |||||||| | ||||||||||||||||||
Sbjct: 9357 aataagctgagaagtaaaatagagagaaa 9329



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>dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C2000443, weakly similar
           to Acyl-CoA hydrolase
          Length = 2875

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  cctccccgcggactcgctccc 84
           |||||||||||||||||||||
Sbjct: 91  cctccccgcggactcgctccc 111



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>ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LOC652284
          (LOC652284), mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 64 cctccccgcggactcgctccc 84
          |||||||||||||||||||||
Sbjct: 84 cctccccgcggactcgctccc 64



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>ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LOC645442
          (LOC645442), mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 64 cctccccgcggactcgctccc 84
          |||||||||||||||||||||
Sbjct: 84 cctccccgcggactcgctccc 64



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>gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, complete sequence
          Length = 132033

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    cctccccgcggactcgctccc 84
             |||||||||||||||||||||
Sbjct: 76734 cctccccgcggactcgctccc 76754



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>emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 in linkage group 20,
             complete sequence
          Length = 161957

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 364   aaataagctaaaaagtaaaat 384
             |||||||||||||||||||||
Sbjct: 10451 aaataagctaaaaagtaaaat 10431



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>gb|AC154677.2| Mus musculus BAC clone RP24-299I4 from chromosome 14, complete sequence
          Length = 149259

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 370    gctaaaaagtaaaatagagag 390
              |||||||||||||||||||||
Sbjct: 128467 gctaaaaagtaaaatagagag 128447



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>ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 mRNA, complete cds
          Length = 1323

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 90/114 (78%)
 Strand = Plus / Plus

                                                                       
Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 186 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 245

                                                                 
Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238
           || |||||  ||||| || | || || ||||||||||| || ||||| ||||||
Sbjct: 246 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 299



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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
             complete sequence
          Length = 143425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   acatctacttgttcccatta 241
             ||||||||||||||||||||
Sbjct: 57632 acatctacttgttcccatta 57651



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>emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on chromosome 10 Contains two
             novel genes and a CpG island, complete sequence
          Length = 178563

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cgctgggagaagatggcgtc 33
             ||||||||||||||||||||
Sbjct: 78200 cgctgggagaagatggcgtc 78181



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>emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H19 on chromosome 20q13.11-13.33
             Contains ESTs, STSs, GSSs and a CpG island, complete
             sequence
          Length = 178473

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccccccaggactctcaccct 111
             ||||||||||||||||||||
Sbjct: 18604 ccccccaggactctcaccct 18623



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>gb|AF543849.1| Sesbania drummondii maturase-like protein (matK) gene, complete cds;
            chloroplast gene for chloroplast product
          Length = 1536

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  aaaaataagctaaaaagtaaaata 385
            |||||||| |||||||||||||||
Sbjct: 1018 aaaaataacctaaaaagtaaaata 995



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>emb|BX005300.5| Zebrafish DNA sequence from clone CH211-87G21, complete sequence
          Length = 110022

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   taaaaagtaaaatagagaga 391
             ||||||||||||||||||||
Sbjct: 31702 taaaaagtaaaatagagaga 31683



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>gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complete sequence
          Length = 136197

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 362    aaaaataagctaaaaagtaaaata 385
              |||||||| |||||||||||||||
Sbjct: 132495 aaaaataaactaaaaagtaaaata 132518



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>gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein (At5g60620) mRNA,
           complete cds
          Length = 1162

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 90/114 (78%)
 Strand = Plus / Plus

                                                                       
Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 136 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 195

                                                                 
Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238
           || |||||  ||||| || | || || ||||||||||| || ||||| ||||||
Sbjct: 196 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 249



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>emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 90/114 (78%)
 Strand = Plus / Plus

                                                                       
Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 176 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 235

                                                                 
Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238
           || |||||  ||||| || | || || ||||||||||| || ||||| ||||||
Sbjct: 236 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 289



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>emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, complete sequence
          Length = 245924

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    taaaaagtaaaatagagaga 391
              ||||||||||||||||||||
Sbjct: 167389 taaaaagtaaaatagagaga 167408



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>dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown protein, complete
           cds, clone: RAFL21-19-N13
          Length = 1324

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 90/114 (78%)
 Strand = Plus / Plus

                                                                       
Query: 125 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 184
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 186 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 245

                                                                 
Query: 185 tgcttcaagncaaattctncggagccatggaactggaacatctacttgttccca 238
           || |||||  ||||| || | || || ||||||||||| || ||||| ||||||
Sbjct: 246 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 299



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>gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, exon 1
          Length = 452

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gcgctggacgcgcccaacct 54
           ||||||||||||||||||||
Sbjct: 103 gcgctggacgcgcccaacct 122



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>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence
          Length = 210088

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    ggttcttaacacttgtacta 307
              ||||||||||||||||||||
Sbjct: 128612 ggttcttaacacttgtacta 128631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,872,830
Number of Sequences: 3902068
Number of extensions: 2872830
Number of successful extensions: 55465
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55401
Number of HSP's gapped (non-prelim): 61
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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