>NUD20_ARATH (Q8VXZ0) Nudix hydrolase 20, chloroplast precursor (EC 3.6.1.-)|
           (AtNUDT20)
          Length = 374

 Score =  102 bits (254), Expect = 3e-22
 Identities = 50/72 (69%), Positives = 59/72 (81%), Gaps = 2/72 (2%)
 Frame = +3

Query: 30  HVTLHSSLRTPEDRTIAIGDVIKGLGE--LIPGIRNELYPVTSSYGMPVYFSLERAAAPY 203
           +VTL+  L+ PEDRT A+ DVIK LG+  +IPGIRNELYPV  S+  PV+FSLERAAAPY
Sbjct: 141 YVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPY 200

Query: 204 FGIKAYGIHMNG 239
           FGIK YG+HMNG
Sbjct: 201 FGIKGYGVHMNG 212

>NUD24_ARATH (P0C026) Nudix hydrolase 24, chloroplast precursor (EC 3.6.1.-)|
           (AtNUDT24)
          Length = 365

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
 Frame = +3

Query: 30  HVTLHSSLRTPEDRTIAIGDVIKGLGE--LIPGIRNELYPVTSSYGMPVYFSLERAAAPY 203
           HVTL+  L  PE+RT A+  VIK LG   +IPGIRNELYPV  S+  P +FS+ERAAAPY
Sbjct: 132 HVTLNMMLDKPEERTRAVAHVIKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPY 191

Query: 204 FGIKAYGIHMNG 239
           FG+K Y IH+NG
Sbjct: 192 FGLKGYAIHVNG 203

>YJ9J_YEAST (P47173) Hypothetical 39.7 kDa protein in HOM6-PMT4 intergenic|
           region
          Length = 342

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 114 IPGIRNELYPVTSSYGMPVYFSLERAAAPYFGIKAYGIHMNG 239
           + G RNE Y V  +     Y  +ERA A   GI  YGIH+NG
Sbjct: 123 VKGWRNEKYAVWVN--KKPYVLVERAVAGVLGIITYGIHING 162

>DCDA_ACTPA (O69203) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP|
           decarboxylase)
          Length = 437

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
 Frame = +3

Query: 27  EHVTLHSSLRTPEDRTIAIG-----------DVIKGLGELIPGIRNELYPVT 149
           E V LH +++TPED   A+G           D I+ LG L  G ++ L  VT
Sbjct: 118 ERVLLHGNVKTPEDLKAALGYGVGRVVVDSFDEIEQLGALAEGPQDVLVRVT 169

>SYI_ANASP (Q8YXY3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 960

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
 Frame = +3

Query: 3   ATMAXNSVEHVTLHSSLRTPEDRTIAIGDVIK-----GLGELIPGIRNELYPVTSSYGMP 167
           AT     +EH T    L   E   +  GD I      GL    PG   E Y V   YG+P
Sbjct: 305 ATFKGKELEHTTYRHPLFDRESPVVVGGDYITTESGTGLVHTAPGHGQEDYVVGLRYGLP 364

Query: 168 V 170
           +
Sbjct: 365 I 365

>SYV_PYRAB (Q9UY55) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 891

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 51  LRTPEDRTIAIGDVIKGLGELIPGIRNELYPVTSSYGMPVYFSLERAA 194
           L  PE R   I +  + LGEL   + +E+    +S+GMP+   LE  A
Sbjct: 721 LSWPEYREDRIDEKAEKLGELARKVVSEMRKYKNSHGMPLNAKLEHVA 768

>SYA_THET8 (P74941) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 882

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 51  LRTPEDRTIAIGDVIKGL--GELIPGIRNELYPVTSSYGMPVYFSLERAAAPYFGIKAYG 224
           L T E     +  ++ GL  GE++PG   E + +  +YG P+  ++E AA   +G+   G
Sbjct: 369 LETLEGGLKRLDALLSGLKPGEVLPG--KEAFRLYDTYGFPLDLTVEIAAERGYGVDTEG 426

>SYA_THET2 (P61707) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 882

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 51  LRTPEDRTIAIGDVIKGL--GELIPGIRNELYPVTSSYGMPVYFSLERAAAPYFGIKAYG 224
           L T E     +  ++ GL  GE++PG   E + +  +YG P+  ++E AA   +G+   G
Sbjct: 369 LETLEGGLKRLDALLSGLKPGEVLPG--KEAFRLYDTYGFPLDLTVEIAAERGYGVDTEG 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,075,883
Number of Sequences: 219361
Number of extensions: 552662
Number of successful extensions: 1619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)