| Clone Name | bags15a13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110E07, full insert sequence Length = 1611 Score = 180 bits (91), Expect = 1e-42 Identities = 157/179 (87%) Strand = Plus / Plus Query: 30 catgtgactctccactcatctctcaggactccagaagatcgaacaatcgccatcggagat 89 |||||||||||||| |||||||| ||||||||||| || ||||||| || | ||| | Sbjct: 469 catgtgactctccattcatctctaaggactccagatgaacgaacaaatgctgttggaagt 528 Query: 90 gtcataaaaggcctaggagaactcattcctggtatacgaaatgagctctatccagtaacc 149 ||||||| | | |||||||| || ||||| ||||| |||||||||||||||||| |||| Sbjct: 529 gtcataagaagtctaggagatctgattccaggtattcgaaatgagctctatccaataaca 588 Query: 150 tcatcttacggcatgcctgtgtacttctctctggaacgtgctgctgctccctactttgg 208 |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 589 tcatcttatggcatgcctgtgtacttctctctggaacgtgctgctgccccctactttgg 647
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 135 bits (68), Expect = 7e-29 Identities = 80/84 (95%) Strand = Plus / Minus Query: 133 agctctatccagtaacctcatcttacggcatgcctgtgtacttctctctggaacgtgctg 192 ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 9329455 agctctatccaataacatcatcttatggcatgcctgtgtacttctctctggaacgtgctg 9329396 Query: 193 ctgctccctactttggtataaagg 216 |||| ||||||||||||||||||| Sbjct: 9329395 ctgccccctactttggtataaagg 9329372 Score = 65.9 bits (33), Expect = 5e-08 Identities = 87/105 (82%) Strand = Plus / Minus Query: 30 catgtgactctccactcatctctcaggactccagaagatcgaacaatcgccatcggagat 89 |||||||||||||| |||||||| ||||||||||| || ||||||| || | ||| | Sbjct: 9329780 catgtgactctccattcatctctaaggactccagatgaacgaacaaatgctgttggaagt 9329721 Query: 90 gtcataaaaggcctaggagaactcattcctggtatacgaaatgag 134 ||||||| | | |||||||| || ||||| ||||| ||||||||| Sbjct: 9329720 gtcataagaagtctaggagatctgattccaggtattcgaaatgag 9329676 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 aggcttatggtattcatatgaatgggta 241 |||||||||| |||||||||||||||| Sbjct: 9328914 aggcttatggagttcatatgaatgggta 9328887
>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1742_G01 Length = 154912 Score = 135 bits (68), Expect = 7e-29 Identities = 80/84 (95%) Strand = Plus / Minus Query: 133 agctctatccagtaacctcatcttacggcatgcctgtgtacttctctctggaacgtgctg 192 ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 154746 agctctatccaataacatcatcttatggcatgcctgtgtacttctctctggaacgtgctg 154687 Query: 193 ctgctccctactttggtataaagg 216 |||| ||||||||||||||||||| Sbjct: 154686 ctgccccctactttggtataaagg 154663 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 aggcttatggtattcatatgaatgggta 241 |||||||||| |||||||||||||||| Sbjct: 154205 aggcttatggagttcatatgaatgggta 154178
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0024J13 Length = 127614 Score = 135 bits (68), Expect = 7e-29 Identities = 80/84 (95%) Strand = Plus / Minus Query: 133 agctctatccagtaacctcatcttacggcatgcctgtgtacttctctctggaacgtgctg 192 ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 12869 agctctatccaataacatcatcttatggcatgcctgtgtacttctctctggaacgtgctg 12810 Query: 193 ctgctccctactttggtataaagg 216 |||| ||||||||||||||||||| Sbjct: 12809 ctgccccctactttggtataaagg 12786 Score = 65.9 bits (33), Expect = 5e-08 Identities = 87/105 (82%) Strand = Plus / Minus Query: 30 catgtgactctccactcatctctcaggactccagaagatcgaacaatcgccatcggagat 89 |||||||||||||| |||||||| ||||||||||| || ||||||| || | ||| | Sbjct: 13194 catgtgactctccattcatctctaaggactccagatgaacgaacaaatgctgttggaagt 13135 Query: 90 gtcataaaaggcctaggagaactcattcctggtatacgaaatgag 134 ||||||| | | |||||||| || ||||| ||||| ||||||||| Sbjct: 13134 gtcataagaagtctaggagatctgattccaggtattcgaaatgag 13090 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 aggcttatggtattcatatgaatgggta 241 |||||||||| |||||||||||||||| Sbjct: 12328 aggcttatggagttcatatgaatgggta 12301
>ref|XM_512173.1| PREDICTED: Pan troglodytes similar to F-box protein 15; F-box only protein 15 (LOC455471), mRNA Length = 2676 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 161 catgcctgtgtacttctctctggaa 185 |||| |||||||||||||||||||| Sbjct: 1758 catgactgtgtacttctctctggaa 1782
>gb|AC170598.2| Mus musculus BAC clone RP23-349D13 from chromosome 9, complete sequence Length = 217146 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ggcctaggagaactcattcct 119 ||||||||||||||||||||| Sbjct: 2097 ggcctaggagaactcattcct 2077
>gb|AC166365.4| Mus musculus BAC clone RP24-428H14 from chromosome 9, complete sequence Length = 172948 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ggcctaggagaactcattcct 119 ||||||||||||||||||||| Sbjct: 102812 ggcctaggagaactcattcct 102792
>emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on chromosome 9 Contains the gene for protein kinase PKNbeta (pknbeta), a novel gene, the ZDHHC12 gene for zinc finger, DHHC domain containing 12 (ZNF400, FLJ14524), the gene for ZYG homolog, a novel gene (FLJ10743), the ENDOG gene for endonuclease G, a novel gene (HSPC109), the 3' end of the CCBL1 gene for cysteine conjugate-beta lyase; cytoplasmic (glutamine transaminase K, kyneurenine aminotransferase) and six CpG islands, complete sequence Length = 166664 Score = 42.1 bits (21), Expect = 0.78 Identities = 27/29 (93%) Strand = Plus / Plus Query: 37 ctctccactcatctctcaggactccagaa 65 |||| |||||| ||||||||||||||||| Sbjct: 68796 ctctgcactcacctctcaggactccagaa 68824
>emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chromosome 11 Contains a novel gene, the Arht1 gene for ras homolog gene family member T1, the 5' end of the Rhbdl4 gene for rhomboid veinlet-like 4 (Drosophila), complete sequence Length = 153420 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 tctccactcatctctcaggac 58 ||||||||||||||||||||| Sbjct: 96840 tctccactcatctctcaggac 96860
>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence Length = 141820 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 161 catgcctgtgtacttctctctggaa 185 |||| |||||||||||||||||||| Sbjct: 49491 catgactgtgtacttctctctggaa 49467
>gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707P17 map 15q21.2, complete sequence Length = 169077 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tggaacgtgctgctgctccct 201 ||||||||||||||||||||| Sbjct: 33009 tggaacgtgctgctgctccct 33029
>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete sequence Length = 144714 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tggaacgtgctgctgctccct 201 ||||||||||||||||||||| Sbjct: 131763 tggaacgtgctgctgctccct 131783
>gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174257 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 agtgtggagcatgtgactct 40 |||||||||||||||||||| Sbjct: 71891 agtgtggagcatgtgactct 71910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,964,831 Number of Sequences: 3902068 Number of extensions: 1964831 Number of successful extensions: 30330 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30302 Number of HSP's gapped (non-prelim): 27 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)