ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 1e-42
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 135 7e-29
3dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic D... 135 7e-29
4dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic D... 135 7e-29
5ref|XM_512173.1| PREDICTED: Pan troglodytes similar to F-box pro... 42 0.78
6gb|AC170598.2| Mus musculus BAC clone RP23-349D13 from chromosom... 42 0.78
7gb|AC166365.4| Mus musculus BAC clone RP24-428H14 from chromosom... 42 0.78
8emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on ch... 42 0.78
9emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chr... 42 0.78
10gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, co... 42 0.78
11gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707... 42 0.78
12gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108... 42 0.78
13gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Can... 40 3.1

>dbj|AK067539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110E07, full
           insert sequence
          Length = 1611

 Score =  180 bits (91), Expect = 1e-42
 Identities = 157/179 (87%)
 Strand = Plus / Plus

                                                                       
Query: 30  catgtgactctccactcatctctcaggactccagaagatcgaacaatcgccatcggagat 89
           |||||||||||||| |||||||| ||||||||||| || |||||||  ||  | |||  |
Sbjct: 469 catgtgactctccattcatctctaaggactccagatgaacgaacaaatgctgttggaagt 528

                                                                       
Query: 90  gtcataaaaggcctaggagaactcattcctggtatacgaaatgagctctatccagtaacc 149
           ||||||| | | |||||||| || ||||| ||||| |||||||||||||||||| |||| 
Sbjct: 529 gtcataagaagtctaggagatctgattccaggtattcgaaatgagctctatccaataaca 588

                                                                      
Query: 150 tcatcttacggcatgcctgtgtacttctctctggaacgtgctgctgctccctactttgg 208
           |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 589 tcatcttatggcatgcctgtgtacttctctctggaacgtgctgctgccccctactttgg 647



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  135 bits (68), Expect = 7e-29
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                           
Query: 133     agctctatccagtaacctcatcttacggcatgcctgtgtacttctctctggaacgtgctg 192
               ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9329455 agctctatccaataacatcatcttatggcatgcctgtgtacttctctctggaacgtgctg 9329396

                                       
Query: 193     ctgctccctactttggtataaagg 216
               |||| |||||||||||||||||||
Sbjct: 9329395 ctgccccctactttggtataaagg 9329372



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                           
Query: 30      catgtgactctccactcatctctcaggactccagaagatcgaacaatcgccatcggagat 89
               |||||||||||||| |||||||| ||||||||||| || |||||||  ||  | |||  |
Sbjct: 9329780 catgtgactctccattcatctctaaggactccagatgaacgaacaaatgctgttggaagt 9329721

                                                            
Query: 90      gtcataaaaggcctaggagaactcattcctggtatacgaaatgag 134
               ||||||| | | |||||||| || ||||| ||||| |||||||||
Sbjct: 9329720 gtcataagaagtctaggagatctgattccaggtattcgaaatgag 9329676



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 214     aggcttatggtattcatatgaatgggta 241
               ||||||||||  ||||||||||||||||
Sbjct: 9328914 aggcttatggagttcatatgaatgggta 9328887



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>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1742_G01
          Length = 154912

 Score =  135 bits (68), Expect = 7e-29
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                          
Query: 133    agctctatccagtaacctcatcttacggcatgcctgtgtacttctctctggaacgtgctg 192
              ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 154746 agctctatccaataacatcatcttatggcatgcctgtgtacttctctctggaacgtgctg 154687

                                      
Query: 193    ctgctccctactttggtataaagg 216
              |||| |||||||||||||||||||
Sbjct: 154686 ctgccccctactttggtataaagg 154663



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 214    aggcttatggtattcatatgaatgggta 241
              ||||||||||  ||||||||||||||||
Sbjct: 154205 aggcttatggagttcatatgaatgggta 154178



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>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0024J13
          Length = 127614

 Score =  135 bits (68), Expect = 7e-29
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                         
Query: 133   agctctatccagtaacctcatcttacggcatgcctgtgtacttctctctggaacgtgctg 192
             ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12869 agctctatccaataacatcatcttatggcatgcctgtgtacttctctctggaacgtgctg 12810

                                     
Query: 193   ctgctccctactttggtataaagg 216
             |||| |||||||||||||||||||
Sbjct: 12809 ctgccccctactttggtataaagg 12786



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                         
Query: 30    catgtgactctccactcatctctcaggactccagaagatcgaacaatcgccatcggagat 89
             |||||||||||||| |||||||| ||||||||||| || |||||||  ||  | |||  |
Sbjct: 13194 catgtgactctccattcatctctaaggactccagatgaacgaacaaatgctgttggaagt 13135

                                                          
Query: 90    gtcataaaaggcctaggagaactcattcctggtatacgaaatgag 134
             ||||||| | | |||||||| || ||||| ||||| |||||||||
Sbjct: 13134 gtcataagaagtctaggagatctgattccaggtattcgaaatgag 13090



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 214   aggcttatggtattcatatgaatgggta 241
             ||||||||||  ||||||||||||||||
Sbjct: 12328 aggcttatggagttcatatgaatgggta 12301



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>ref|XM_512173.1| PREDICTED: Pan troglodytes similar to F-box protein 15; F-box only
            protein 15 (LOC455471), mRNA
          Length = 2676

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 161  catgcctgtgtacttctctctggaa 185
            |||| ||||||||||||||||||||
Sbjct: 1758 catgactgtgtacttctctctggaa 1782



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>gb|AC170598.2| Mus musculus BAC clone RP23-349D13 from chromosome 9, complete
            sequence
          Length = 217146

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   ggcctaggagaactcattcct 119
            |||||||||||||||||||||
Sbjct: 2097 ggcctaggagaactcattcct 2077



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>gb|AC166365.4| Mus musculus BAC clone RP24-428H14 from chromosome 9, complete sequence
          Length = 172948

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     ggcctaggagaactcattcct 119
              |||||||||||||||||||||
Sbjct: 102812 ggcctaggagaactcattcct 102792



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>emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on chromosome 9 Contains the
             gene for protein kinase PKNbeta (pknbeta),  a novel gene,
             the ZDHHC12 gene for zinc finger, DHHC domain containing
             12 (ZNF400, FLJ14524), the gene for ZYG homolog, a novel
             gene (FLJ10743), the ENDOG gene for endonuclease G, a
             novel gene (HSPC109), the 3' end of the CCBL1 gene for
             cysteine conjugate-beta lyase; cytoplasmic (glutamine
             transaminase K, kyneurenine aminotransferase) and six CpG
             islands, complete sequence
          Length = 166664

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 37    ctctccactcatctctcaggactccagaa 65
             |||| |||||| |||||||||||||||||
Sbjct: 68796 ctctgcactcacctctcaggactccagaa 68824



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>emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chromosome 11 Contains a
             novel gene, the Arht1 gene for ras homolog gene family
             member T1, the 5' end of the Rhbdl4 gene for rhomboid
             veinlet-like 4 (Drosophila), complete sequence
          Length = 153420

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    tctccactcatctctcaggac 58
             |||||||||||||||||||||
Sbjct: 96840 tctccactcatctctcaggac 96860



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>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence
          Length = 141820

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 161   catgcctgtgtacttctctctggaa 185
             |||| ||||||||||||||||||||
Sbjct: 49491 catgactgtgtacttctctctggaa 49467



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>gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707P17 map 15q21.2, complete
             sequence
          Length = 169077

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   tggaacgtgctgctgctccct 201
             |||||||||||||||||||||
Sbjct: 33009 tggaacgtgctgctgctccct 33029



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>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete sequence
          Length = 144714

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    tggaacgtgctgctgctccct 201
              |||||||||||||||||||||
Sbjct: 131763 tggaacgtgctgctgctccct 131783



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>gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174257

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    agtgtggagcatgtgactct 40
             ||||||||||||||||||||
Sbjct: 71891 agtgtggagcatgtgactct 71910


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,964,831
Number of Sequences: 3902068
Number of extensions: 1964831
Number of successful extensions: 30330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30302
Number of HSP's gapped (non-prelim): 27
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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