ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14j23 |
|---|---|
| Clone Library Name | barley_pub |
>SDG40_ARATH (Q6NQJ8) Protein SET DOMAIN GROUP 40| Length = 491 Score = 33.9 bits (76), Expect = 0.37 Identities = 30/122 (24%), Positives = 52/122 (42%) Frame = +1 Query: 76 NKLSELACLALYLMYEKKQGRDSLWYPYIKELDRQRGRGQLAVESPLLWTESELDYLNGS 255 N LS L++ L+YE + + S WYPY+ + R + LL T + Sbjct: 92 NSLSSTQILSVCLLYEMSKEKKSFWYPYLFHIPR---------DYDLLATFGNFE-KQAL 141 Query: 256 PMRDEVVVRDEGIKKEYNELDTLWFMAGSLFKQYPFDVPTEAFPFEIFKQAFVAVQSCVV 435 + D V ++ K +E W AGSL K+ ++ + F+ + A + S + Sbjct: 142 QVEDAVWATEKATAKCQSE----WKEAGSLMKE--LELKPKFRSFQAWLWASATISSRTL 195 Query: 436 HL 441 H+ Sbjct: 196 HV 197
>ECM32_YEAST (P32644) Putative ATP-dependent RNA helicase ECM32 (EC 3.6.1.-)| (Extracellular matrix protein 32) (Helicase 1) (scHelI) (DNA helicase B) (DNA helicase III) (Hcs B) (Modulator of translation termination protein 1) Length = 1121 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 130 QGRDSLWYPYIKELDRQRGRGQLAVESPLLWTESELDYLNGS 255 Q +WY +IKEL QRG+ L VE W L NGS Sbjct: 556 QDEQKVWYIFIKELSIQRGKYVLLVEL-FSWNNLSLPTKNGS 596
>K1219_MOUSE (Q8BQZ4) Protein KIAA1219| Length = 1484 Score = 32.0 bits (71), Expect = 1.4 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 12/133 (9%) Frame = +1 Query: 103 ALYLMYEKKQGRDSLWYPY------------IKELDRQRGRGQLAVESPLLWTESELDYL 246 +L+L+ + QG S+ + Y ++ L + G +A LL T+ E+ + Sbjct: 7 SLHLVIQSDQGHTSVLHSYPESVGREVANAVVRPLGQALGTSSVAGSESLLKTDKEVKWT 66 Query: 247 NGSPMRDEVVVRDEGIKKEYNELDTLWFMAGSLFKQYPFDVPTEAFPFEIFKQAFVAVQS 426 + D K ++ T W MA L P ++ P I K+ + VQS Sbjct: 67 MEVICYGLTLPLDGETVKYCVDVYTDWIMALVL--------PKDSIPLPIIKEPNLYVQS 118 Query: 427 CVVHLQKVSLARR 465 + HLQ + + R+ Sbjct: 119 ILKHLQNLFVPRQ 131
>CCA_STRT2 (Q5M5P1) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 402 Score = 31.2 bits (69), Expect = 2.4 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Frame = +1 Query: 157 YIKELDRQRGRGQLAVESPLLWTESE-LDYLNGSPMRDEVVVRDEGIKKEYNELDTLWFM 333 +++ L+ R V + L +E +D NG D V+R G +E D L M Sbjct: 105 FVRSLEEDLKRRDFTVNAFALNENAEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIM 164 Query: 334 AGSLFKQYPFDVPTEAFPFEIFKQAFVAVQSCVVHLQKVSLARRF 468 G F + F+I ++ F A+ S L+K+S+ R F Sbjct: 165 RGLRF--------AASLDFDIEEKTFEAMTSHAFLLEKISIERSF 201
>CCA_STRT1 (Q5M153) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 402 Score = 31.2 bits (69), Expect = 2.4 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Frame = +1 Query: 157 YIKELDRQRGRGQLAVESPLLWTESE-LDYLNGSPMRDEVVVRDEGIKKEYNELDTLWFM 333 +++ L+ R V + L +E +D NG D V+R G +E D L M Sbjct: 105 FVRSLEEDLKRRDFTVNAFALNENAEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIM 164 Query: 334 AGSLFKQYPFDVPTEAFPFEIFKQAFVAVQSCVVHLQKVSLARRF 468 G F + F+I ++ F A+ S L+K+S+ R F Sbjct: 165 RGLRF--------AASLDFDIEEKTFEAMTSHAFLLEKISIERSF 201
>FLGK_BORBU (P70859) Flagellar hook-associated protein 1 (HAP1)| Length = 627 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = +1 Query: 130 QGRDSLWYPYIKELDRQRGRGQLAVESPLLWTESELDYLNGSPMRDEVVVRDEGIKKEYN 309 +GR + E + G +LW ++ YL + + +RDE IK E N Sbjct: 240 EGRHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKTGKLGSLLNIRDEEIKNEIN 299 Query: 310 ELDTL 324 EL+ + Sbjct: 300 ELNNI 304
>RKM1_YEAST (Q08961) Ribosomal N-lysine methyltransferase 1 (EC 2.1.1.-)| Length = 583 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = +1 Query: 202 VESPLLWTESELDYLNGSPMRDEVVVRDEGIKKEYNEL 315 + SPL+W SEL L+ + + + + + EGI KE+ EL Sbjct: 114 LNSPLVWNPSELKRLSSTNIGNSIHEKFEGIFKEWFEL 151
>RDRP_ACLSA (P54891) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)| (216.5 kDa protein) (ORF1) Length = 1885 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%) Frame = +1 Query: 328 FMAGSLFKQYPFDVPTEAFPFEIFKQAFV--------AVQSCVVHLQKVS 453 F GSLF + P VP + FP +FK+ F+ VQS V L+++S Sbjct: 287 FDVGSLFVK-PVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQLS 335
>RDRP_ACLSP (P27738) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)| (216.5 kDa protein) (ORF1) Length = 1884 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%) Frame = +1 Query: 328 FMAGSLFKQYPFDVPTEAFPFEIFKQAFV--------AVQSCVVHLQKVS 453 F GSLF + P VP + FP +FK+ F+ VQS V L+++S Sbjct: 287 FDVGSLFVK-PVRVPIQDFPLSVFKKIFIYMSSLKKPDVQSAVAKLRQLS 335
>ACN1_CAEEL (Q18581) Inactive angiotensin-converting enzyme-related protein| precursor (ACE-like non-metallopeptidase protein 1) Length = 906 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/92 (27%), Positives = 40/92 (43%) Frame = +1 Query: 16 ARCPLXRVLGDESVAELLTTNKLSELACLALYLMYEKKQGRDSLWYPYIKELDRQRGRGQ 195 A CP +L + + TT KL E K G W +K L+ G+G+ Sbjct: 688 ALCPEGTILSEGCILSEDTTEKLRETM----------KLGSSITW---LKALEMISGKGE 734 Query: 196 LAVESPLLWTESELDYLNGSPMRDEVVVRDEG 291 L + L + E +++L + D+VVV +G Sbjct: 735 LDAQPLLEYYEPLINWLRNTNEIDQVVVGWDG 766
>YGGS_ECOLI (P67080) Hypothetical UPF0001 protein yggS| Length = 234 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 160 IKELDRQRGRGQLAVESPLLWTESELDYLNGSPMRDEVVVRDEGIKKEYNELDTL 324 + EL R R RG +A+ +P E +Y+ + ++ V G+K Y +DTL Sbjct: 152 VAELPRLRLRGLMAIPAP------ESEYVRQFEVARQMAVAFAGLKTRYPHIDTL 200
>YGGS_ECOL6 (P67081) Hypothetical UPF0001 protein yggS| Length = 234 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 160 IKELDRQRGRGQLAVESPLLWTESELDYLNGSPMRDEVVVRDEGIKKEYNELDTL 324 + EL R R RG +A+ +P E +Y+ + ++ V G+K Y +DTL Sbjct: 152 VAELPRLRLRGLMAIPAP------ESEYVRQFEVARQMAVAFAGLKTRYPHIDTL 200
>YGGS_ECO57 (P67082) Hypothetical UPF0001 protein yggS| Length = 234 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 160 IKELDRQRGRGQLAVESPLLWTESELDYLNGSPMRDEVVVRDEGIKKEYNELDTL 324 + EL R R RG +A+ +P E +Y+ + ++ V G+K Y +DTL Sbjct: 152 VAELPRLRLRGLMAIPAP------ESEYVRQFEVARQMAVAFAGLKTRYPHIDTL 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,163,026 Number of Sequences: 219361 Number of extensions: 1485594 Number of successful extensions: 3933 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3834 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3933 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
