ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14j16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191218.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 488 bits (246), Expect = e-134 Identities = 465/538 (86%) Strand = Plus / Plus Query: 3 cgcctcgtacatggcgtgcgcgagccgtgcctgaagtttcttaacccgaaaagtatagaa 62 |||||||| ||||||||||||||||| ||| |||| || |||| || | |||||||||| Sbjct: 292 cgcctcgtccatggcgtgcgcgagccttgcttgaacttccttagtcccagaagtatagaa 351 Query: 63 aatttggcatttcacgaaggctcgggacttgatgctgtggtcaagaggatcatatacaaa 122 |||||| ||||| | ||| | ||||||| |||||||||||||||| ||||||||| Sbjct: 352 gatttggtatttcctggaggtacaaaacttgattctgtggtcaagaggattatatacaaa 411 Query: 123 actgatgacgacgactatgactcacaccactctgaggcaaactctacctatttactgcag 182 |||||||| |||||||||| || ||||||||||||||||||| || ||||| ||||| Sbjct: 412 tctgatgacaacgactatgatacataccactctgaggcaaactcaacgtatttgctgcaa 471 Query: 183 catgcagaagctaccaggttcaatttgtttacaggattccagacagtttctgaaagagaa 242 ||||| || ||||||||||||||| |||| |||||||| |||||| || |||| ||||| Sbjct: 472 catgctgaggctaccaggttcaatctgttcacaggatttcagacacttcctgagagagag 531 Query: 243 gagagcttcaaggtgaatgagactgttaatgtgcactgtggtttctacagtgacaatggt 302 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 532 gagagcttcaaggtgaatgaaactgttaatgtgcactgtggtttctacagtgacaatggt 591 Query: 303 ggcttcaaaatttctgatgatgatgtcagatacatgagaacttgtaaagttgtcgtgtct 362 || |||||||||||||| ||| | ||||| |||||| ||||||||||||| || ||| Sbjct: 592 ggtttcaaaatttctgacattgacatgagatatatgagatcttgtaaagttgtggtatct 651 Query: 363 acctgcgcattcggtggtggggatgatctatatcaacctattggaatggtcaattcttct 422 || || || || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 652 acttgtgcgtttggtggtggggatgatctatatcagcctattggaatggtcaattcttca 711 Query: 423 attggaaaggtctgctatgtggctttctgggatgaggtcacgttatcaactcaagaagct 482 |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| || Sbjct: 712 attggaaaggtctgctatgttgctttctgggatgaggtcacactatcaactcaggaatct 771 Query: 483 gaaggaaaattaactggcgacaatgaaaagataggaaggtggcgtatcattgttgtca 540 ||||||||| || | | ||||| || ||||||||||||||| || |||||||||| Sbjct: 772 gaaggaaaagtagtcgatggcaatggaatgataggaaggtggcgcataattgttgtca 829
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 216 bits (109), Expect = 6e-53 Identities = 163/181 (90%) Strand = Plus / Plus Query: 253 aggtgaatgagactgttaatgtgcactgtggtttctacagtgacaatggtggcttcaaaa 312 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 31357079 aggtgaatgaaactgttaatgtgcactgtggtttctacagtgacaatggtggtttcaaaa 31357138 Query: 313 tttctgatgatgatgtcagatacatgagaacttgtaaagttgtcgtgtctacctgcgcat 372 ||||||| ||| | ||||| |||||| ||||||||||||| || ||||| || || | Sbjct: 31357139 tttctgacattgacatgagatatatgagatcttgtaaagttgtggtatctacttgtgcgt 31357198 Query: 373 tcggtggtggggatgatctatatcaacctattggaatggtcaattcttctattggaaagg 432 | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 31357199 ttggtggtggggatgatctatatcagcctattggaatggtcaattcttcaattggaaagg 31357258 Query: 433 t 433 | Sbjct: 31357259 t 31357259 Score = 174 bits (88), Expect = 2e-40 Identities = 148/168 (88%) Strand = Plus / Plus Query: 89 acttgatgctgtggtcaagaggatcatatacaaaactgatgacgacgactatgactcaca 148 ||||||| |||||||||||||||| ||||||||| |||||||| |||||||||| || | Sbjct: 31356827 acttgattctgtggtcaagaggattatatacaaatctgatgacaacgactatgatacata 31356886 Query: 149 ccactctgaggcaaactctacctatttactgcagcatgcagaagctaccaggttcaattt 208 |||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| | Sbjct: 31356887 ccactctgaggcaaactcaacgtatttgctgcaacatgctgaggctaccaggttcaatct 31356946 Query: 209 gtttacaggattccagacagtttctgaaagagaagagagcttcaaggt 256 ||| |||||||| |||||| || |||| ||||| |||||||||||||| Sbjct: 31356947 gttcacaggatttcagacacttcctgagagagaggagagcttcaaggt 31356994 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 430 aggtctgctatgtggctttctgggatgaggtcacgttatcaactcaagaagctgaaggaa 489 ||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||| Sbjct: 31357353 aggtctgctatgttgctttctgggatgaggtcacactatcaactcaggaatctgaaggaa 31357412 Query: 490 aattaactggcgacaatgaaaagataggaaggtggcgtatcattgttgtca 540 || || | | ||||| || ||||||||||||||| || |||||||||| Sbjct: 31357413 aagtagtcgatggcaatggaatgataggaaggtggcgcataattgttgtca 31357463 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 cgcctcgtacatggcgtgcgcgagc 27 |||||||| |||||||||||||||| Sbjct: 31356220 cgcctcgtccatggcgtgcgcgagc 31356244
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 216 bits (109), Expect = 6e-53 Identities = 163/181 (90%) Strand = Plus / Plus Query: 253 aggtgaatgagactgttaatgtgcactgtggtttctacagtgacaatggtggcttcaaaa 312 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 111362 aggtgaatgaaactgttaatgtgcactgtggtttctacagtgacaatggtggtttcaaaa 111421 Query: 313 tttctgatgatgatgtcagatacatgagaacttgtaaagttgtcgtgtctacctgcgcat 372 ||||||| ||| | ||||| |||||| ||||||||||||| || ||||| || || | Sbjct: 111422 tttctgacattgacatgagatatatgagatcttgtaaagttgtggtatctacttgtgcgt 111481 Query: 373 tcggtggtggggatgatctatatcaacctattggaatggtcaattcttctattggaaagg 432 | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 111482 ttggtggtggggatgatctatatcagcctattggaatggtcaattcttcaattggaaagg 111541 Query: 433 t 433 | Sbjct: 111542 t 111542 Score = 174 bits (88), Expect = 2e-40 Identities = 148/168 (88%) Strand = Plus / Plus Query: 89 acttgatgctgtggtcaagaggatcatatacaaaactgatgacgacgactatgactcaca 148 ||||||| |||||||||||||||| ||||||||| |||||||| |||||||||| || | Sbjct: 111110 acttgattctgtggtcaagaggattatatacaaatctgatgacaacgactatgatacata 111169 Query: 149 ccactctgaggcaaactctacctatttactgcagcatgcagaagctaccaggttcaattt 208 |||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| | Sbjct: 111170 ccactctgaggcaaactcaacgtatttgctgcaacatgctgaggctaccaggttcaatct 111229 Query: 209 gtttacaggattccagacagtttctgaaagagaagagagcttcaaggt 256 ||| |||||||| |||||| || |||| ||||| |||||||||||||| Sbjct: 111230 gttcacaggatttcagacacttcctgagagagaggagagcttcaaggt 111277 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 430 aggtctgctatgtggctttctgggatgaggtcacgttatcaactcaagaagctgaaggaa 489 ||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||| Sbjct: 111636 aggtctgctatgttgctttctgggatgaggtcacactatcaactcaggaatctgaaggaa 111695 Query: 490 aattaactggcgacaatgaaaagataggaaggtggcgtatcattgttgtca 540 || || | | ||||| || ||||||||||||||| || |||||||||| Sbjct: 111696 aagtagtcgatggcaatggaatgataggaaggtggcgcataattgttgtca 111746 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 cgcctcgtacatggcgtgcgcgagc 27 |||||||| |||||||||||||||| Sbjct: 110503 cgcctcgtccatggcgtgcgcgagc 110527
>gb|AC151710.1| Pan troglodytes chromosome X clone PTB-084K12 map human ortholog q23, complete sequence Length = 174741 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 236 aagagaagagagcttcaaggtgaatg 261 |||||||||| ||||||||||||||| Sbjct: 49934 aagagaagagtgcttcaaggtgaatg 49909
>ref|XM_366848.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02924.4) partial mRNA Length = 2007 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 58 tagaaaatttggcatttcacga 79 |||||||||||||||||||||| Sbjct: 270 tagaaaatttggcatttcacga 291
>emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on chromosome X Contains the 5' end of the PAK3 gene for p21 (CDKN1A)-activated kinase 3, complete sequence Length = 156498 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 236 aagagaagagagcttcaaggtgaatg 261 |||||||||| ||||||||||||||| Sbjct: 136028 aagagaagagtgcttcaaggtgaatg 136003
>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete sequence Length = 198743 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 gggatgatctatatcaacctat 403 |||||||||||||||||||||| Sbjct: 37073 gggatgatctatatcaacctat 37052
>gb|AC150979.15| Medicago truncatula clone mth2-115a17, complete sequence Length = 152779 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 527 tatcattgttgtcaagaatctc 548 |||||||||||||||||||||| Sbjct: 131932 tatcattgttgtcaagaatctc 131911
>gb|AC140035.9| Medicago truncatula clone mth2-25n18, complete sequence Length = 120870 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 527 tatcattgttgtcaagaatctc 548 |||||||||||||||||||||| Sbjct: 29264 tatcattgttgtcaagaatctc 29243
>gb|AC151796.1| Ornithorhynchus anatinus chromosome UNK clone OABb-11A1, complete sequence Length = 130877 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 293 tgacaatggtggcttcaaaatttct 317 |||||||| |||||||||||||||| Sbjct: 17434 tgacaatgttggcttcaaaatttct 17458
>gb|AC124976.9| Mus musculus chromosome 3, clone RP24-84E6, complete sequence Length = 218027 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatgatgatgtcagatacat 337 ||||||||||||||||||||| Sbjct: 153820 tgatgatgatgtcagatacat 153840
>gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, complete sequence Length = 242587 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 tcaaggtgaatgagactgtta 270 ||||||||||||||||||||| Sbjct: 195434 tcaaggtgaatgagactgtta 195454
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 tgtggctttctgggatgaggt 460 ||||||||||||||||||||| Sbjct: 5392949 tgtggctttctgggatgaggt 5392929
>gb|AC161438.6| Mus musculus chromosome 18, clone RP23-62E1, complete sequence Length = 198865 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 tcaaggtgaatgagactgtta 270 ||||||||||||||||||||| Sbjct: 169451 tcaaggtgaatgagactgtta 169431
>gb|AC008914.7| Homo sapiens chromosome 5 clone CTD-2270I16, complete sequence Length = 139677 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 agtttctgaaagagaagagag 247 ||||||||||||||||||||| Sbjct: 76815 agtttctgaaagagaagagag 76795
>gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complete sequence Length = 193650 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 attggaatggtcaattcttct 422 ||||||||||||||||||||| Sbjct: 68203 attggaatggtcaattcttct 68223
>ref|XM_228060.3| PREDICTED: Rattus norvegicus ubiquitin associated and SH3 domain containing, A (predicted) (Ubash3a_predicted), mRNA Length = 3485 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 gaaagagaagagagcttcaag 254 ||||||||||||||||||||| Sbjct: 198 gaaagagaagagagcttcaag 178
>emb|CR749763.6| Zebrafish DNA sequence from clone CH211-285D14 in linkage group 4, complete sequence Length = 66589 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 agcttcaaggtgaatgagact 266 ||||||||||||||||||||| Sbjct: 33299 agcttcaaggtgaatgagact 33319 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 agcttcaaggtgaatgagact 266 ||||||||||||||||||||| Sbjct: 30564 agcttcaaggtgaatgagact 30584 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 agcttcaaggtgaatgagact 266 ||||||||||||||||||||| Sbjct: 24077 agcttcaaggtgaatgagact 24057
>gb|AC140790.3| Gallus gallus BAC clone TAM32-50D18 from chromosome ul, complete sequence Length = 176981 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 gcactgtggtttctacagtga 295 ||||||||||||||||||||| Sbjct: 124732 gcactgtggtttctacagtga 124752
>gb|AC102908.11| Mus musculus chromosome 16, clone RP24-288K2, complete sequence Length = 174803 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gaagagagcttcaaggtgaa 259 |||||||||||||||||||| Sbjct: 63425 gaagagagcttcaaggtgaa 63444
>ref|XM_516176.1| PREDICTED: Pan troglodytes similar to IQ motif containing with AAA domain (LOC460042), mRNA Length = 3783 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 agaagagagcttcaaggtgaatga 262 |||||||||||||||||| ||||| Sbjct: 3513 agaagagagcttcaaggtaaatga 3536
>gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09, complete sequence Length = 95755 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tgtggtttctacagtgacaa 298 |||||||||||||||||||| Sbjct: 87953 tgtggtttctacagtgacaa 87972
>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0015A05, complete sequence Length = 127330 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tgtggtttctacagtgacaa 298 |||||||||||||||||||| Sbjct: 5817 tgtggtttctacagtgacaa 5836
>gb|AC153865.3| Mus musculus BAC RP23-373P9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180703 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 caatggtggcttcaaaattt 315 |||||||||||||||||||| Sbjct: 107042 caatggtggcttcaaaattt 107023
>gb|AC110249.10| Mus musculus chromosome 14, clone RP23-257O8, complete sequence Length = 204244 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 ctgatgatgatgtcagatac 335 |||||||||||||||||||| Sbjct: 138245 ctgatgatgatgtcagatac 138264
>gb|AC131749.2| Mus musculus BAC clone RP23-26G8 from 9, complete sequence Length = 234280 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gatgacgacgactatgactc 145 |||||||||||||||||||| Sbjct: 97205 gatgacgacgactatgactc 97224
>emb|CR956422.6| Pig DNA sequence from clone PigE-93N11 on chromosome 6, complete sequence Length = 184430 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 ctgcagcatgcagaagctaccagg 200 |||||||||||||||||| ||||| Sbjct: 34220 ctgcagcatgcagaagctcccagg 34197
>emb|AL391665.28| Human DNA sequence from clone RP11-519K18 on chromosome 10 Contains the 3' end of the RAI17 gene for retinoic acid induced 17, the 5' end of the PPIF gene for peptidylprolyl isomerase F (cyclophilin F) and two CpG islands, complete sequence Length = 159866 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aagagaagagagcttcaagg 255 |||||||||||||||||||| Sbjct: 126388 aagagaagagagcttcaagg 126369
>emb|AL365335.11| Human DNA sequence from clone RP11-278E14 on chromosome 6, complete sequence Length = 160889 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 aagctgaaggaaaattaact 497 |||||||||||||||||||| Sbjct: 99075 aagctgaaggaaaattaact 99094
>emb|AL161436.12| Human DNA sequence from clone RP11-377N20 on chromosome 6 Contains part of a novel gene, complete sequence Length = 124814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 tttctgaaagagaagagagc 248 |||||||||||||||||||| Sbjct: 40660 tttctgaaagagaagagagc 40679
>emb|AL009047.1|HS1156N12 Human DNA sequence from clone RP5-1156N12 on chromosome X, complete sequence Length = 146360 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 ggcttcaaaatttctgatga 322 |||||||||||||||||||| Sbjct: 42523 ggcttcaaaatttctgatga 42542
>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7/17 Length = 348813 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ctgaaagagaagagagcttc 251 |||||||||||||||||||| Sbjct: 18604 ctgaaagagaagagagcttc 18585
>gb|AC140078.8| Homo sapiens 12 BAC RP13-7D7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174598 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 gaaggaaaattaactggcga 502 |||||||||||||||||||| Sbjct: 73805 gaaggaaaattaactggcga 73824
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 aagagaagagagcttcaagg 255 |||||||||||||||||||| Sbjct: 74523 aagagaagagagcttcaagg 74542
>emb|CR751236.6| Zebrafish DNA sequence from clone DKEY-27M6 in linkage group 23, complete sequence Length = 108342 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 aagctgaaggaaaattaact 497 |||||||||||||||||||| Sbjct: 50737 aagctgaaggaaaattaact 50718
>emb|BX901907.7| Zebrafish DNA sequence from clone DKEY-22H13 in linkage group 14, complete sequence Length = 71551 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 agtatagaaaatttggcatt 73 |||||||||||||||||||| Sbjct: 56015 agtatagaaaatttggcatt 56034
>gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194991 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaagtatagaaaatttggca 71 |||||||||||||||||||| Sbjct: 80652 aaagtatagaaaatttggca 80671
>ref|NM_136073.2| Drosophila melanogaster CG18397-RA (CG18397), mRNA Length = 6134 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 ctattggaatggtcaattcttcta 423 ||||||||||||||| |||||||| Sbjct: 1524 ctattggaatggtcacttcttcta 1501
>gb|AC025038.6| Homo sapiens chromosome 10 clone RP11-443O13, complete sequence Length = 163132 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aatttctgatgatgatgtca 330 |||||||||||||||||||| Sbjct: 102730 aatttctgatgatgatgtca 102749
>gb|AC154180.2| Mus musculus BAC clone RP24-469E6 from chromosome 14, complete sequence Length = 187810 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 ctgatgatgatgtcagatac 335 |||||||||||||||||||| Sbjct: 104392 ctgatgatgatgtcagatac 104373
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tgtggtttctacagtgacaa 298 |||||||||||||||||||| Sbjct: 7257998 tgtggtttctacagtgacaa 7258017
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tgtggtttctacagtgacaa 298 |||||||||||||||||||| Sbjct: 2520931 tgtggtttctacagtgacaa 2520950
>gb|AC009204.5|AC009204 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone BACR03E19, complete sequence Length = 167777 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ctattggaatggtcaattcttcta 423 ||||||||||||||| |||||||| Sbjct: 116604 ctattggaatggtcacttcttcta 116627
>gb|AC011756.5|AC011756 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone BACR17A06, complete sequence Length = 170546 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ctattggaatggtcaattcttcta 423 ||||||||||||||| |||||||| Sbjct: 67190 ctattggaatggtcacttcttcta 67213
>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1642C07 Length = 206004 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tgtggtttctacagtgacaa 298 |||||||||||||||||||| Sbjct: 175705 tgtggtttctacagtgacaa 175686
>gb|AC022215.4|AC022215 Homo sapiens BAC clone RP11-764I5 from 3, complete sequence Length = 180068 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaagtatagaaaatttggca 71 |||||||||||||||||||| Sbjct: 48063 aaagtatagaaaatttggca 48044
>ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactive domain 4A (Rbp1 like) (predicted) (Arid4a_predicted), mRNA Length = 4822 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ctgatgacgacgactatgac 143 |||||||||||||||||||| Sbjct: 1508 ctgatgacgacgactatgac 1527
>emb|BX005383.8| Zebrafish DNA sequence from clone DKEYP-19E1 in linkage group 25, complete sequence Length = 142728 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 aagctgaaggaaaattaact 497 |||||||||||||||||||| Sbjct: 118937 aagctgaaggaaaattaact 118956
>emb|AL928790.4| Zebrafish DNA sequence from clone CH211-146N9, complete sequence Length = 171673 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 aagctgaaggaaaattaact 497 |||||||||||||||||||| Sbjct: 90779 aagctgaaggaaaattaact 90760
>gb|BT021951.1| Drosophila melanogaster LD01527 full insert cDNA Length = 6147 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 ctattggaatggtcaattcttcta 423 ||||||||||||||| |||||||| Sbjct: 1520 ctattggaatggtcacttcttcta 1497
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 aagagaagagagcttcaagg 255 |||||||||||||||||||| Sbjct: 55649 aagagaagagagcttcaagg 55668
>emb|BX255897.3| Zebrafish DNA sequence from clone DKEY-263B2 in linkage group 20, complete sequence Length = 181862 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 aagctgaaggaaaattaact 497 |||||||||||||||||||| Sbjct: 142670 aagctgaaggaaaattaact 142689
>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5) Length = 893329 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tatttactgcagcatgcaga 190 |||||||||||||||||||| Sbjct: 633827 tatttactgcagcatgcaga 633846
>gb|AE003661.3| Drosophila melanogaster chromosome 2L, section 70 of 83 of the complete sequence Length = 265558 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ctattggaatggtcaattcttcta 423 ||||||||||||||| |||||||| Sbjct: 32328 ctattggaatggtcacttcttcta 32351
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctatttactgcagcatgca 188 |||||||||||||||||||| Sbjct: 681510 cctatttactgcagcatgca 681529
>emb|AL590387.7| Human DNA sequence from clone RP3-356B20 on chromosome 6, complete sequence Length = 76075 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gacaatggtggcttcaaaat 313 |||||||||||||||||||| Sbjct: 17716 gacaatggtggcttcaaaat 17735
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tgtggtttctacagtgacaa 298 |||||||||||||||||||| Sbjct: 121735 tgtggtttctacagtgacaa 121754
>gb|AC087840.16| Mus musculus strain C57BL/6J chromosome 16 clone rp23-240k10, complete sequence Length = 190761 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gaagagagcttcaaggtgaa 259 |||||||||||||||||||| Sbjct: 14997 gaagagagcttcaaggtgaa 15016
>gb|U60597.1|OAU60597 Ovis aries myeloid antimicrobial peptide precursor (Map-34) gene, complete cds Length = 1963 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 gagcttcaaggtgaatgagactgt 268 ||||||||||||||| |||||||| Sbjct: 887 gagcttcaaggtgaaggagactgt 910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,887,218 Number of Sequences: 3902068 Number of extensions: 5887218 Number of successful extensions: 124598 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124313 Number of HSP's gapped (non-prelim): 282 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
