ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9l05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196635.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019M20.7), mRNA Length = 813 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 501 tccgccgctgcgatgtcgttccagagctggtccatg 466
>ref|XM_475091.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 627 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 491 tccgccgccgcgatgtcgttccagagctggtccatg 456 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Minus Query: 162 atcttgttgtagtactcttggtcgtcgatccgccagagggagtagt 207 ||||| ||||||||||| | ||||||||||| ||| || ||||||| Sbjct: 608 atcttcttgtagtactcctcgtcgtcgatcctccacagcgagtagt 563
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 43911 tccgccgccgcgatgtcgttccagagctggtccatg 43876 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Minus Query: 162 atcttgttgtagtactcttggtcgtcgatccgccagagggagtagt 207 ||||| ||||||||||| | ||||||||||| ||| || ||||||| Sbjct: 44028 atcttcttgtagtactcctcgtcgtcgatcctccacagcgagtagt 43983
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 76431 tccgccgctgcgatgtcgttccagagctggtccatg 76466
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 14896653 tccgccgctgcgatgtcgttccagagctggtccatg 14896688 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 326 gatgtcgttccagagctgatccatg 350 |||||||||||||||||| |||||| Sbjct: 15527285 gatgtcgttccagagctggtccatg 15527309
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 771469 tccgccgccgcgatgtcgttccagagctggtccatg 771434 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Minus Query: 162 atcttgttgtagtactcttggtcgtcgatccgccagagggagtagt 207 ||||| ||||||||||| | ||||||||||| ||| || ||||||| Sbjct: 771586 atcttcttgtagtactcctcgtcgtcgatcctccacagcgagtagt 771541 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctg 343 |||| ||| |||||||||||||||||||| Sbjct: 7805451 tccgccgctgcgatgtcgttccagagctg 7805423
>gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, complete sequence Length = 207974 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 33 atataattacatgcatgtatatat 56 |||||||||||||||||||||||| Sbjct: 199156 atataattacatgcatgtatatat 199133
>dbj|AK111634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119H17, full insert sequence Length = 2126 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 1587 tccgccgccgcgatgtcgttccagagctggtccatg 1552 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Minus Query: 162 atcttgttgtagtactcttggtcgtcgatccgccagagggagtagt 207 ||||| ||||||||||| | ||||||||||| ||| || ||||||| Sbjct: 1704 atcttcttgtagtactcctcgtcgtcgatcctccacagcgagtagt 1659
>dbj|AK099223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091O17, full insert sequence Length = 2124 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 1587 tccgccgccgcgatgtcgttccagagctggtccatg 1552 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Minus Query: 162 atcttgttgtagtactcttggtcgtcgatccgccagagggagtagt 207 ||||| ||||||||||| | ||||||||||| ||| || ||||||| Sbjct: 1704 atcttcttgtagtactcctcgtcgtcgatcctccacagcgagtagt 1659
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 14904894 tccgccgctgcgatgtcgttccagagctggtccatg 14904929 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 326 gatgtcgttccagagctgatccatg 350 |||||||||||||||||| |||||| Sbjct: 15535526 gatgtcgttccagagctggtccatg 15535550
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctgatccatg 350 |||| ||| |||||||||||||||||||| |||||| Sbjct: 116650 tccgccgccgcgatgtcgttccagagctggtccatg 116615 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Minus Query: 162 atcttgttgtagtactcttggtcgtcgatccgccagagggagtagt 207 ||||| ||||||||||| | ||||||||||| ||| || ||||||| Sbjct: 116767 atcttcttgtagtactcctcgtcgtcgatcctccacagcgagtagt 116722
>gb|DQ074762.1| Chlamydomonas reinhardtii chromatin-remodelling complex ATPase ISWI2 gene, complete cds Length = 10571 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 368 ctgcaccacctccgccttcttctcct 393 ||||||||||||||||| |||||||| Sbjct: 3769 ctgcaccacctccgcctccttctcct 3744
>ref|NM_196728.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094K20.3), mRNA Length = 990 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 326 gatgtcgttccagagctgatccatg 350 |||||||||||||||||| |||||| Sbjct: 667 gatgtcgttccagagctggtccatg 643
>ref|NM_031046.3| Rattus norvegicus inositol 1,4,5-triphosphate receptor 2 (Itpr2), mRNA Length = 10708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 84 gcaggggcggcgacggcggcg 104
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 315 tccgacgcggcgatgtcgttccagagctg 343 |||| ||| |||||||||||||||||||| Sbjct: 83037 tccgccgctgcgatgtcgttccagagctg 83009
>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence Length = 178159 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 138113 gcaggggcggcgacggcggcg 138093
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 aagctctagctatagctagga 98 ||||||||||||||||||||| Sbjct: 4043107 aagctctagctatagctagga 4043127
>gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, complete sequence Length = 208907 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 23745 gcaggggcggcgacggcggcg 23725
>emb|X61677.1|RNITPR2R Rat ITPR2 gene for type 2 inositol triphosphate receptor Length = 10708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 84 gcaggggcggcgacggcggcg 104
>gb|AF329470.2| Rattus norvegicus IP3 receptor isoform 2 mRNA, complete cds Length = 9942 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 59 gcaggggcggcgacggcggcg 79
>gb|AY559190.1| Zea mays isolate mon00160 Ac insertion site Length = 552 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 tcatgtccgggtacctctccgacgc 322 |||||||||||||| |||||||||| Sbjct: 156 tcatgtccgggtacgtctccgacgc 132
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 87071 gcaggggcggcgacggcggcg 87091
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 42802 gcaggggcggcgacggcggcg 42782
>dbj|AK143206.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130308J22 product:inositol 1,4,5-triphosphate receptor 2, full insert sequence Length = 2834 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 183 gcaggggcggcgacggcggcg 203
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 aagctctagctatagctagga 98 ||||||||||||||||||||| Sbjct: 56261 aagctctagctatagctagga 56241
>dbj|AK169446.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630014B17 product:inositol 1,4,5-triphosphate receptor 2, full insert sequence Length = 2465 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 gcaggggcggcgacggcggcg 272 ||||||||||||||||||||| Sbjct: 139 gcaggggcggcgacggcggcg 159
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 248 cagagcaggggcggcgacggcggcg 272 ||||||| ||||||||||||||||| Sbjct: 21165696 cagagcacgggcggcgacggcggcg 21165720
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 315 tccgacgcggcgatgtcgttccagagctg 343 |||| ||| |||||||||||||||||||| Sbjct: 9563182 tccgccgctgcgatgtcgttccagagctg 9563210
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 aagctctagctatagctagga 98 ||||||||||||||||||||| Sbjct: 4043218 aagctctagctatagctagga 4043238
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 326 gatgtcgttccagagctgatccatg 350 |||||||||||||||||| |||||| Sbjct: 14651 gatgtcgttccagagctggtccatg 14675
>gb|AC068544.7| Homo sapiens BAC clone RP11-369J9 from 2, complete sequence Length = 159397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 catgtatatatggtaatacaa 66 ||||||||||||||||||||| Sbjct: 94273 catgtatatatggtaatacaa 94253
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 gccttcttctcctcggtcgccgacg 405 |||||| |||||||||||||||||| Sbjct: 2759899 gccttcatctcctcggtcgccgacg 2759923
>dbj|AP003540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0450D12 Length = 176431 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 315 tccgacgcggcgatgtcgttccagagctg 343 |||| ||| |||||||||||||||||||| Sbjct: 21799 tccgccgctgcgatgtcgttccagagctg 21827
>emb|AL607002.3|OSJN00117 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085H03, complete sequence Length = 132393 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 248 cagagcaggggcggcgacggcggcg 272 ||||||| ||||||||||||||||| Sbjct: 103082 cagagcacgggcggcgacggcggcg 103106
>emb|AL731838.19| Mouse DNA sequence from clone RP23-139O16 on chromosome X, complete sequence Length = 212472 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 taattacatgcatgtatatat 56 ||||||||||||||||||||| Sbjct: 94270 taattacatgcatgtatatat 94290
>gb|AE001426.1| Plasmodium falciparum 3D7 chromosome 2 section 63 of 73 of the complete sequence Length = 12029 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 2660 atataattacatgcatgtat 2679
>gb|BC075468.1| Xenopus tropicalis MGC89272 protein, mRNA (cDNA clone MGC:89272 IMAGE:6977016), complete cds Length = 1919 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 1122 atataattacatgcatgtat 1141
>gb|AC136969.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0048P17, complete sequence Length = 149883 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 agagcaggggcggcgacggcggcg 272 |||||| ||||||||||||||||| Sbjct: 82821 agagcacgggcggcgacggcggcg 82798
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cggcgacggcggcgtgaccg 278 |||||||||||||||||||| Sbjct: 4668470 cggcgacggcggcgtgaccg 4668489
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cggcgacggcggcgtgaccg 278 |||||||||||||||||||| Sbjct: 4621101 cggcgacggcggcgtgaccg 4621120
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cggcgacggcggcgtgaccg 278 |||||||||||||||||||| Sbjct: 1606035 cggcgacggcggcgtgaccg 1606016
>emb|AL773599.11| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 46151 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 attacatgcatgtatatatg 57 |||||||||||||||||||| Sbjct: 36423 attacatgcatgtatatatg 36442
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 tctcctcggtcgccgacgtg 407 |||||||||||||||||||| Sbjct: 5048942 tctcctcggtcgccgacgtg 5048961
>emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 map q21.2, complete sequence Length = 128963 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tatataatctacaactcaac 26 |||||||||||||||||||| Sbjct: 98470 tatataatctacaactcaac 98489
>emb|CR388017.7| Zebrafish DNA sequence from clone CH211-283H24 in linkage group 7, complete sequence Length = 111978 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 106190 atataattacatgcatgtat 106209
>gb|AC122818.4| Mus musculus BAC clone RP23-243O16 from 17, complete sequence Length = 167735 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 30 tacatataattacatgcatgtatatatg 57 |||||||||||| |||||||| |||||| Sbjct: 152168 tacatataattatatgcatgtgtatatg 152141
>ref|XM_793822.1| PREDICTED: Strongylocentrotus purpuratus similar to Trichohyalin (LOC594379), mRNA Length = 3432 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 acctccgccttcttctcctc 394 |||||||||||||||||||| Sbjct: 2093 acctccgccttcttctcctc 2074
>emb|X16619.1|CRARG7 Chlamydomonas reinhardtii ARG7 gene for argininosuccinate lyase Length = 8670 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gtaatacaagtagtgcaatg 77 |||||||||||||||||||| Sbjct: 712 gtaatacaagtagtgcaatg 693
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 gcaccacctccgccttcttctcct 393 |||||||| ||||||||||||||| Sbjct: 263209 gcaccaccgccgccttcttctcct 263232
>emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE Length = 199033 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aattaagaacaagaacagca 117 |||||||||||||||||||| Sbjct: 128002 aattaagaacaagaacagca 128021
>emb|CR450720.5| Zebrafish DNA sequence from clone DKEYP-51F11 in linkage group 2, complete sequence Length = 200950 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 181168 atataattacatgcatgtat 181187
>emb|BX293994.28| Zebrafish DNA sequence from clone DKEY-256K14 in linkage group 10, complete sequence Length = 210640 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 244 atataattacatgcatgtat 225
>gb|AF119412.1|AF119412 Lupinus albus 1-aminocyclopropane-1-carboxylate synthase 2 (ACS2) gene, partial cds Length = 3371 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 attacatgcatgtatatatg 57 |||||||||||||||||||| Sbjct: 201 attacatgcatgtatatatg 182
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 agagcaggggcggcgacggcggcg 272 |||||| ||||||||||||||||| Sbjct: 916826 agagcacgggcggcgacggcggcg 916803
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 ccagagcaggggcggcgacggcgg 270 ||||||||| |||||||||||||| Sbjct: 7590302 ccagagcagtggcggcgacggcgg 7590279
>ref|NM_001004960.1| Xenopus tropicalis MGC89272 protein (MGC89272), mRNA Length = 1919 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 1122 atataattacatgcatgtat 1141
>emb|BX569780.6| Zebrafish DNA sequence from clone CH211-134A17 in linkage group 10, complete sequence Length = 187807 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 99782 atataattacatgcatgtat 99763
>gb|AC153962.3| Mus musculus 10 BAC RP24-347C6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147491 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tcaacctttacatataatta 41 |||||||||||||||||||| Sbjct: 107752 tcaacctttacatataatta 107771
>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8, complete sequence Length = 234864 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 attaagaacaagaacagcaa 118 |||||||||||||||||||| Sbjct: 220547 attaagaacaagaacagcaa 220528
>ref|XM_311006.2| Anopheles gambiae str. PEST ENSANGP00000008130 (ENSANGG00000006134), partial mRNA Length = 3261 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cgccttcttctcctcggtcg 399 |||||||||||||||||||| Sbjct: 3063 cgccttcttctcctcggtcg 3082
>emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 map q21.2, complete sequence Length = 169077 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tatataatctacaactcaac 26 |||||||||||||||||||| Sbjct: 4207 tatataatctacaactcaac 4226
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 ccagagcaggggcggcgacggcgg 270 ||||||||| |||||||||||||| Sbjct: 95712 ccagagcagtggcggcgacggcgg 95689
>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete sequence Length = 241304 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tatataatctacaactcaac 26 |||||||||||||||||||| Sbjct: 5635 tatataatctacaactcaac 5654
>emb|CT574565.2| Pan troglodytes chromosome X clone CH251-78I22 map Xq28, complete sequence Length = 170088 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 atataattacatgcatgtatatat 56 ||||||||||||| |||||||||| Sbjct: 31663 atataattacatgtatgtatatat 31686
>emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 in linkage group 6, complete sequence Length = 187638 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 attaagaacaagaacagcaa 118 |||||||||||||||||||| Sbjct: 175866 attaagaacaagaacagcaa 175847
>emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in linkage group 10, complete sequence Length = 58467 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atataattacatgcatgtat 52 |||||||||||||||||||| Sbjct: 1757 atataattacatgcatgtat 1776
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tcttctcctcggtcgccgac 404 |||||||||||||||||||| Sbjct: 3812548 tcttctcctcggtcgccgac 3812567
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 agagcaggggcggcgacggcggcg 272 |||||| ||||||||||||||||| Sbjct: 915251 agagcacgggcggcgacggcggcg 915228
>emb|AL954824.2| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 46151 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 attacatgcatgtatatatg 57 |||||||||||||||||||| Sbjct: 9729 attacatgcatgtatatatg 9710
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 aggaattaagaacaagaaca 114 |||||||||||||||||||| Sbjct: 4160580 aggaattaagaacaagaaca 4160599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,801,941 Number of Sequences: 3902068 Number of extensions: 3801941 Number of successful extensions: 105944 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103917 Number of HSP's gapped (non-prelim): 2027 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
