ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14j04 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 31.6 bits (70), Expect = 2.0 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 22/140 (15%) Frame = +1 Query: 64 MSYDLVFTAYMDHISNTRFDYFDREETDPLLFEIWKRAAKQKIT------FRKALDQ--- 216 + Y ++F+ ++ S ++ R P+L +I + + K+K+T FR L++ Sbjct: 239 LQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTE 298 Query: 217 ----------IQQVNMFPRHEKCIQFILDNSSTYTRLQYTFDTCVEGISDETPEDE--GR 360 + Q + + E Q D+ +++ + E + D + DE Sbjct: 299 RETRQEYALALIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSE 358 Query: 361 MLITKAVWSKLHK-EKTWDE 417 + + WS +HK EK W E Sbjct: 359 LKSGRLEWSPVHKSEKFWRE 378
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 31.6 bits (70), Expect = 2.0 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 22/140 (15%) Frame = +1 Query: 64 MSYDLVFTAYMDHISNTRFDYFDREETDPLLFEIWKRAAKQKIT------FRKALDQ--- 216 + Y ++F+ ++ S ++ R P+L +I + + K+K+T FR L++ Sbjct: 239 LQYQMIFSVWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSVE 298 Query: 217 ----------IQQVNMFPRHEKCIQFILDNSSTYTRLQYTFDTCVEGISDETPEDE--GR 360 + Q + + E Q D+ +++ + E + D + DE Sbjct: 299 RETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSE 358 Query: 361 MLITKAVWSKLHK-EKTWDE 417 + + WS +HK EK W E Sbjct: 359 LKSGRLEWSPVHKSEKFWRE 378
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 31.2 bits (69), Expect = 2.7 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 22/140 (15%) Frame = +1 Query: 64 MSYDLVFTAYMDHISNTRFDYFDREETDPLLFEIWKRAAKQKIT------FRKALDQ--- 216 + Y ++F+ ++ S ++ R P+L +I + + K+K+T FR L++ Sbjct: 239 LQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTE 298 Query: 217 ----------IQQVNMFPRHEKCIQFILDNSSTYTRLQYTFDTCVEGISDETPEDE--GR 360 + Q + + E Q D+ +++ + E + D + DE Sbjct: 299 RETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSE 358 Query: 361 MLITKAVWSKLHK-EKTWDE 417 + + WS +HK EK W E Sbjct: 359 LKSGRLEWSPVHKSEKFWRE 378
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 31.2 bits (69), Expect = 2.7 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 22/140 (15%) Frame = +1 Query: 64 MSYDLVFTAYMDHISNTRFDYFDREETDPLLFEIWKRAAKQKIT------FRKALDQ--- 216 + Y ++F+ ++ S ++ R P+L +I + + K+K+T FR L++ Sbjct: 239 LQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTE 298 Query: 217 ----------IQQVNMFPRHEKCIQFILDNSSTYTRLQYTFDTCVEGISDETPEDE--GR 360 + Q + + E Q D+ +++ + E + D + DE Sbjct: 299 RETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSE 358 Query: 361 MLITKAVWSKLHK-EKTWDE 417 + + WS +HK EK W E Sbjct: 359 LKSGRLEWSPVHKSEKFWRE 378
>HEY1_HUMAN (Q9Y5J3) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy| and enhancer of split related 1) (HESR-1) (Cardiovascular helix-loop-helix factor 2) (HES-related repressor protein 2) (HERP2) Length = 304 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +2 Query: 398 KRRRGMSILRRRYRLLNTLGWISKLHVSQFKTQKDGLLLSSKIL 529 KRRRG+ RRR R+ N+L + +L S F+ Q L ++IL Sbjct: 51 KRRRGIIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEIL 94
>HEY1_CANFA (Q9TSZ2) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy| and enhancer of split related 1) (HESR-1) Length = 304 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +2 Query: 398 KRRRGMSILRRRYRLLNTLGWISKLHVSQFKTQKDGLLLSSKIL 529 KRRRG+ RRR R+ N+L + +L S F+ Q L ++IL Sbjct: 51 KRRRGIIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEIL 94
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.4 bits (67), Expect = 4.6 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 11/112 (9%) Frame = +1 Query: 103 ISNTRFDYFDREETDPLLFEIWKRAAKQKITFRKALDQIQQVNMFPRHEKCIQFI----- 267 +S T F D FE K KI +I+ ++ +P +E+ I FI Sbjct: 776 VSGTEFSTLLHGNDDDAFFEYLKSLGPAKIDL-----EIRSLDAYPPYEEFILFINIMTR 830 Query: 268 -LDNSSTYTRLQYTFDTCVEGISD-----ETPEDEGRMLITKAVWSKLHKEK 405 L + +Q + D +TPED + + W +HKE+ Sbjct: 831 RLSKRRDFELVQACMSVFTKSHEDVLLMHDTPEDTVPVFESLKAWESVHKEE 882
>MARF_DROME (Q7YU24) Transmembrane GTPase Marf (EC 3.6.5.-) (Mitochondrial| assembly regulatory factor) (Mitofusin) Length = 810 Score = 30.4 bits (67), Expect = 4.6 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Frame = +1 Query: 166 WKRAAKQKITF-----RKALDQIQQVNMFPRHEKCIQFILDNSSTYTRLQYTFDTCVEGI 330 W +AK++ TF R A +++ + Q + SST+ RL T DT + Sbjct: 706 WTNSAKER-TFKSQYVRHATKKLKMIVDLTSANCSHQVQQELSSTFARLCRTVDTATTDM 764 Query: 331 SDETPEDEGRMLITKAVWSKLHKEKTWDEYIKEKIQIAKH 450 +DE + ++ I +A +L + YI+ ++ I +H Sbjct: 765 NDELKTLDSQLNILEANQKQLKLLRNKANYIQNELDIFEH 804
>SYD_STRT2 (Q5M283) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 583 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 1 GISMEAIGFRQAVEIAVDFPHMSYDLVFTAYMDHISNTRFDYFDREETD 147 G+ + + + VE+ + FP MSYD Y +TRFD ++ T+ Sbjct: 253 GLIAKVMKETKGVEVTLPFPRMSYDDAMNNYGSDKPDTRFDMLLQDLTE 301
>SYD_STRT1 (Q5LXN1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 583 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 1 GISMEAIGFRQAVEIAVDFPHMSYDLVFTAYMDHISNTRFDYFDREETD 147 G+ + + + VE+ + FP MSYD Y +TRFD ++ T+ Sbjct: 253 GLIAKVMKETKGVEVTLPFPRMSYDDAMNNYGSDKPDTRFDMLLQDLTE 301
>HEY1_MOUSE (Q9WV93) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy| and enhancer of split-related 1) (HESR-1) Length = 299 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +2 Query: 398 KRRRGMSILRRRYRLLNTLGWISKLHVSQFKTQKDGLLLSSKIL 529 KRRRG+ RRR R+ N+L + +L S F+ Q L ++IL Sbjct: 51 KRRRGIIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEIL 94
>KTN1_VULVU (O97961) Kinectin| Length = 1330 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 5/85 (5%) Frame = +1 Query: 196 FRKALDQIQQVNM-----FPRHEKCIQFILDNSSTYTRLQYTFDTCVEGISDETPEDEGR 360 F+ ++Q++Q N FP HE+ ++ I + T LQ D+ E + + ++ Sbjct: 973 FKSEIEQLKQCNYQQASSFPPHEELLKVISEREKEITGLQNELDSLKEAVEHQRKKNND- 1031 Query: 361 MLITKAVWSKLHKEKTWDEYIKEKI 435 + + W + + ++ +++K+ Sbjct: 1032 --LREKNWEAMEALASTEKMLQDKV 1054
>SYD_DESVH (Q725Q7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 610 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +1 Query: 37 VEIAVDFPHMSYDLVFTAYMDHISNTRFDYFDREETDPLLFEIWKRAAK 183 V++ V FP M+YD Y +TRFD ++ TD + +K AK Sbjct: 287 VDVTVPFPRMTYDQAMGEYGVDKPDTRFDLRLKDVTDAVRGSEFKLFAK 335
>PEDB_PEDAC (P36496) Pediocin PA-1 immunity protein (Pediocin ACH immunity| protein) Length = 112 Score = 30.0 bits (66), Expect = 6.0 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%) Frame = +1 Query: 220 QQVNMFPRHEKCIQFILDNSSTYTRLQYTFDTCVEGIS-----DETPEDEGRMLITK--- 375 Q +++F R +QF+L T QY D GIS +TPE + R++ K Sbjct: 12 QALDLFTR----LQFLLQKHDTIEPYQYVLDILETGISKTKHNQQTPERQARVVYNKIAS 67 Query: 376 -AVWSKLH 396 A+ KLH Sbjct: 68 QALVDKLH 75
>LRRC2_MOUSE (Q8VDB8) Leucine-rich repeat-containing protein 2| Length = 371 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Frame = -2 Query: 288 IRTTIIQYKLYTLLMSREHVHLLDLVQSLSECNLLLGGTLPNLKKERISFFTVKIIKPCV 109 I +T+IQ + T + + + +LDL ++ C G L NLK+ +SF +K I P + Sbjct: 128 IHSTLIQI-IPTYIELFQAMKILDLPKNQITCLPAEIGRLKNLKELNVSFNHLKSIPPEL 186 Query: 108 GNMIHV----CSKN 79 G+ H+ CS N Sbjct: 187 GDCEHLERLDCSGN 200
>PDXY_HAEIN (P44690) Pyridoxamine kinase (EC 2.7.1.35) (PM kinase)| Length = 288 Score = 29.6 bits (65), Expect = 7.8 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -2 Query: 240 REHVHLLDLVQSLSECNLLLGGTLPNLKKERISFFTVKIIKPCVGNMIHVCSKN*IIAHV 61 RE V LD ++ L EC+ LL G L + ++ F ++ IK N +++C ++ H Sbjct: 60 REIVTGLDNIEKLQECDALLSGYLGSAEQVDQILFALEQIKLRNPNALYLCDP--VMPHP 117 Query: 60 GKV 52 K+ Sbjct: 118 KKI 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,323,055 Number of Sequences: 219361 Number of extensions: 1992192 Number of successful extensions: 5244 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5243 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
