| Clone Name | bags14i22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA Length = 2157 Score = 480 bits (242), Expect = e-132 Identities = 422/482 (87%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatcgaccag 64 ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || |||||| Sbjct: 1174 gattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcattgaccag 1233 Query: 65 agtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaatcactat 124 || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 1234 agccagttctggacagattgggggaagtggcacaagaaggatagactgaagaatcactac 1293 Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 1294 actgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactgatcatg 1353 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 1354 aggaagtttgggaatgttgagcctgataacttctggtctcgtgtatgtgagggtgagacg 1413 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 ||||| ||||||| || |||||| |||| |||||||| ||||| || ||||||||||| Sbjct: 1414 gaggcagtgatcaagcgcccatggtatttattgtggaaatcgcgtcgattgatggagatc 1473 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 |||||||||||| ||||||| ||| |||||| || || || | ||||||||||| || Sbjct: 1474 gtgtctgccatttcctcccggatggattgggactttgattcagtccatgttgtgaggggg 1533 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||||||||||| |||| | |||||||| |||||| |||||| || ||||| | | Sbjct: 1534 gagaaagcccagaacaaacagttgtggccaaatcttgatagagatacttctccagatagt 1593 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 |||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||| || Sbjct: 1594 ctccttacgacacttaatgataaggtcggtgctggccggcatttgtacattgcaaccaat 1653 Query: 485 ga 486 || Sbjct: 1654 ga 1655
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 480 bits (242), Expect = e-132 Identities = 422/482 (87%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatcgaccag 64 ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || |||||| Sbjct: 41580 gattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcattgaccag 41639 Query: 65 agtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaatcactat 124 || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 41640 agccagttctggacagattgggggaagtggcacaagaaggatagactgaagaatcactac 41699 Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 41700 actgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactgatcatg 41759 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 41760 aggaagtttgggaatgttgagcctgataacttctggtctcgtgtatgtgagggtgagacg 41819 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 ||||| ||||||| || |||||| |||| |||||||| ||||| || ||||||||||| Sbjct: 41820 gaggcagtgatcaagcgcccatggtatttattgtggaaatcgcgtcgattgatggagatc 41879 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 |||||||||||| ||||||| ||| |||||| || || || | ||||||||||| || Sbjct: 41880 gtgtctgccatttcctcccggatggattgggactttgattcagtccatgttgtgaggggg 41939 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||||||||||| |||| | |||||||| |||||| |||||| || ||||| | | Sbjct: 41940 gagaaagcccagaacaaacagttgtggccaaatcttgatagagatacttctccagatagt 41999 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 |||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||| || Sbjct: 42000 ctccttacgacacttaatgataaggtcggtgctggccggcatttgtacattgcaaccaat 42059 Query: 485 ga 486 || Sbjct: 42060 ga 42061
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 480 bits (242), Expect = e-132 Identities = 422/482 (87%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatcgaccag 64 ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || |||||| Sbjct: 16162691 gattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcattgaccag 16162750 Query: 65 agtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaatcactat 124 || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 16162751 agccagttctggacagattgggggaagtggcacaagaaggatagactgaagaatcactac 16162810 Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 16162811 actgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactgatcatg 16162870 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 16162871 aggaagtttgggaatgttgagcctgataacttctggtctcgtgtatgtgagggtgagacg 16162930 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 ||||| ||||||| || |||||| |||| |||||||| ||||| || ||||||||||| Sbjct: 16162931 gaggcagtgatcaagcgcccatggtatttattgtggaaatcgcgtcgattgatggagatc 16162990 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 |||||||||||| ||||||| ||| |||||| || || || | ||||||||||| || Sbjct: 16162991 gtgtctgccatttcctcccggatggattgggactttgattcagtccatgttgtgaggggg 16163050 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||||||||||| |||| | |||||||| |||||| |||||| || ||||| | | Sbjct: 16163051 gagaaagcccagaacaaacagttgtggccaaatcttgatagagatacttctccagatagt 16163110 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 |||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||| || Sbjct: 16163111 ctccttacgacacttaatgataaggtcggtgctggccggcatttgtacattgcaaccaat 16163170 Query: 485 ga 486 || Sbjct: 16163171 ga 16163172
>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence Length = 2290 Score = 480 bits (242), Expect = e-132 Identities = 422/482 (87%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatcgaccag 64 ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || |||||| Sbjct: 1277 gattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcattgaccag 1336 Query: 65 agtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaatcactat 124 || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 1337 agccagttctggacagattgggggaagtggcacaagaaggatagactgaagaatcactac 1396 Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 1397 actgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactgatcatg 1456 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 1457 aggaagtttgggaatgttgagcctgataacttctggtctcgtgtatgtgagggtgagacg 1516 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 ||||| ||||||| || |||||| |||| |||||||| ||||| || ||||||||||| Sbjct: 1517 gaggcagtgatcaagcgcccatggtatttattgtggaaatcgcgtcgattgatggagatc 1576 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 |||||||||||| ||||||| ||| |||||| || || || | ||||||||||| || Sbjct: 1577 gtgtctgccatttcctcccggatggattgggactttgattcagtccatgttgtgaggggg 1636 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||||||||||| |||| | |||||||| |||||| |||||| || ||||| | | Sbjct: 1637 gagaaagcccagaacaaacagttgtggccaaatcttgatagagatacttctccagatagt 1696 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 |||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||| || Sbjct: 1697 ctccttacgacacttaatgataaggtcggtgctggccggcatttgtacattgcaaccaat 1756 Query: 485 ga 486 || Sbjct: 1757 ga 1758
>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full insert sequence Length = 2230 Score = 480 bits (242), Expect = e-132 Identities = 422/482 (87%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatcgaccag 64 ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || |||||| Sbjct: 1217 gattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcattgaccag 1276 Query: 65 agtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaatcactat 124 || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 1277 agccagttctggacagattgggggaagtggcacaagaaggatagactgaagaatcactac 1336 Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 1337 actgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactgatcatg 1396 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 1397 aggaagtttgggaatgttgagcctgataacttctggtctcgtgtatgtgagggtgagacg 1456 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 ||||| ||||||| || |||||| |||| |||||||| ||||| || ||||||||||| Sbjct: 1457 gaggcagtgatcaagcgcccatggtatttattgtggaaatcgcgtcgattgatggagatc 1516 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 |||||||||||| ||||||| ||| |||||| || || || | ||||||||||| || Sbjct: 1517 gtgtctgccatttcctcccggatggattgggactttgattcagtccatgttgtgaggggg 1576 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||||||||||| |||| | |||||||| |||||| |||||| || ||||| | | Sbjct: 1577 gagaaagcccagaacaaacagttgtggccaaatcttgatagagatacttctccagatagt 1636 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 |||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||| || Sbjct: 1637 ctccttacgacacttaatgataaggtcggtgctggccggcatttgtacattgcaaccaat 1696 Query: 485 ga 486 || Sbjct: 1697 ga 1698
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 480 bits (242), Expect = e-132 Identities = 422/482 (87%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatcgaccag 64 ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || |||||| Sbjct: 16170932 gattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcattgaccag 16170991 Query: 65 agtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaatcactat 124 || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 16170992 agccagttctggacagattgggggaagtggcacaagaaggatagactgaagaatcactac 16171051 Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 16171052 actgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactgatcatg 16171111 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 16171112 aggaagtttgggaatgttgagcctgataacttctggtctcgtgtatgtgagggtgagacg 16171171 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 ||||| ||||||| || |||||| |||| |||||||| ||||| || ||||||||||| Sbjct: 16171172 gaggcagtgatcaagcgcccatggtatttattgtggaaatcgcgtcgattgatggagatc 16171231 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 |||||||||||| ||||||| ||| |||||| || || || | ||||||||||| || Sbjct: 16171232 gtgtctgccatttcctcccggatggattgggactttgattcagtccatgttgtgaggggg 16171291 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||||||||||| |||| | |||||||| |||||| |||||| || ||||| | | Sbjct: 16171292 gagaaagcccagaacaaacagttgtggccaaatcttgatagagatacttctccagatagt 16171351 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 |||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||| || Sbjct: 16171352 ctccttacgacacttaatgataaggtcggtgctggccggcatttgtacattgcaaccaat 16171411 Query: 485 ga 486 || Sbjct: 16171412 ga 16171413
>gb|AY110859.1| Zea mays CL41895_1 mRNA sequence Length = 888 Score = 377 bits (190), Expect = e-101 Identities = 319/362 (88%) Strand = Plus / Minus Query: 125 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 184 ||||||||||||| | ||||||| ||||||||||||||| |||||||||| |||||||| Sbjct: 874 actgaagacatcaggatgaccccaatgaaacttcgtgacatcaaggacacattgatcatg 815 Query: 185 aggaagtttgggcatgttgagccggataactactggtcacgtgtgtgcgagggtgagaca 244 |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 814 aggaagtttgggaatgttgagcctgataactattggtcacgtgtgtgcgagggtgagact 755 Query: 245 gaggccatgatcaaacggccatggcatttcttgtggaagtcgcgccgcttgatggagatt 304 |||| || ||||| || |||||||||||| ||||||| || || ||||||||||||||| Sbjct: 754 gagggaataatcaagcgcccatggcatttcctgtggaaatctcgtcgcttgatggagatt 695 Query: 305 gtgtctgccattgcctcccgaatgagttgggatttcgactcgatgcatgttgtgagagga 364 || |||||||||||||| || |||| ||||| || |||||| | |||||||| ||||| Sbjct: 694 gtatctgccattgcctcacggatgaactgggactttgactcggtccatgttgtcagaggg 635 Query: 365 gagaaagcccagaacacacagctttggccaaaccttgatgcagatacctcgccagaaaat 424 |||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||| | | Sbjct: 634 gagaaagcgcagaacacacaactttggccaaaccttgacagagatacctcaccagacagt 575 Query: 425 ctccttacgacactcaatgataaggttggtgctggacggtatttgtacattgctaccgat 484 ||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| || Sbjct: 574 ctccttatggcacttaatgataaggttggtgctggccggtatttgtacattgctaccaat 515 Query: 485 ga 486 || Sbjct: 514 ga 513
>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE Length = 111128 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 350 catgttgtgagaggagagaaagcccagaacacacagctttggccaaaccttgatgcagat 409 ||||||||||||||||| || || ||||| | ||||||||||||| ||||||||| || Sbjct: 20699 catgttgtgagaggagaaaaggcgaggaacaaagagctttggccaaatcttgatgcacat 20758 Query: 410 acctc 414 ||||| Sbjct: 20759 acctc 20763 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 5 gatttcaggttctactttgattttgagcacctgaagga 42 ||||| ||||| ||||||||||||||||| ||||||| Sbjct: 20354 gattttaggttttactttgattttgagcatttgaagga 20391
>ref|NM_126461.2| Arabidopsis thaliana unknown protein AT2G04280 mRNA, complete cds Length = 2272 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 2 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 55 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 1055 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 1108
>gb|BT015416.1| Arabidopsis thaliana At2g04280 gene, complete cds Length = 1707 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 2 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 55 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 949 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 1002
>gb|AY056207.1| Arabidopsis thaliana unknown protein (At2g04280) mRNA, complete cds Length = 2037 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 2 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 55 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 1055 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 1108
>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete sequence Length = 81341 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 2 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 55 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 44182 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 44235
>ref|XM_741429.1| Aspergillus fumigatus Af293 exo-beta-1,3-glucanase (Afu4g03350) partial mRNA Length = 2340 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cgtcaaggacacgctgatcat 183 ||||||||||||||||||||| Sbjct: 1353 cgtcaaggacacgctgatcat 1373
>ref|XM_329578.1| Neurospora crassa OR74A hypothetical protein (NCU08534.1) partial mRNA Length = 1545 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gaagtttgggcatgttgagc 206 |||||||||||||||||||| Sbjct: 1090 gaagtttgggcatgttgagc 1071
>ref|XM_957923.1| Neurospora crassa OR74A hypothetical protein (NCU08534.1) partial mRNA Length = 1545 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gaagtttgggcatgttgagc 206 |||||||||||||||||||| Sbjct: 1090 gaagtttgggcatgttgagc 1071
>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research Institute) complete sequence Length = 237199 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 agctttggccaaaccttgat 403 |||||||||||||||||||| Sbjct: 208177 agctttggccaaaccttgat 208196
>gb|AC132142.3| Mus musculus BAC clone RP23-75I5 from chromosome 7, complete sequence Length = 221548 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 atggcatttcttgtggaagt 284 |||||||||||||||||||| Sbjct: 61723 atggcatttcttgtggaagt 61704
>gb|AC121811.2| Mus musculus BAC clone RP23-453O15 from 5, complete sequence Length = 190798 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aggaagtttgggcatgttga 204 |||||||||||||||||||| Sbjct: 25687 aggaagtttgggcatgttga 25668
>gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complete sequence Length = 144546 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aggatttcaggttctacttt 22 |||||||||||||||||||| Sbjct: 9776 aggatttcaggttctacttt 9795
>emb|AL357353.12| Human DNA sequence from clone RP11-251L16 on chromosome 10, complete sequence Length = 129800 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agacatcaaggtgaccccca 149 |||||||||||||||||||| Sbjct: 110930 agacatcaaggtgaccccca 110949
>gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, complete sequence Length = 208055 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tttgagcacctgaaggaatc 45 |||||||||||||||||||| Sbjct: 89841 tttgagcacctgaaggaatc 89860
>gb|AC092711.14| Mus musculus chromosome 5, clone RP23-7D3, complete sequence Length = 191727 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tttgagcacctgaaggaatc 45 |||||||||||||||||||| Sbjct: 132554 tttgagcacctgaaggaatc 132535
>gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence Length = 103495 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 atactgaagacatcaaggtg 142 |||||||||||||||||||| Sbjct: 17859 atactgaagacatcaaggtg 17878
>gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosome 5, complete sequence Length = 184560 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aggaagtttgggcatgttga 204 |||||||||||||||||||| Sbjct: 172893 aggaagtttgggcatgttga 172874
>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence Length = 226595 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 atggcatttcttgtggaagt 284 |||||||||||||||||||| Sbjct: 5349 atggcatttcttgtggaagt 5368
>gb|AC003686.1|AC003686 Homo sapiens 12q13.1 PAC RPCI1-90J4 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 113457 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 attttgagcacctgaaggaa 43 |||||||||||||||||||| Sbjct: 94892 attttgagcacctgaaggaa 94873
>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete sequence Length = 182829 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 gtgagaggagagaaagcccagaac 379 |||||| ||||||||||||||||| Sbjct: 18295 gtgagatgagagaaagcccagaac 18318 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,940,563 Number of Sequences: 3902068 Number of extensions: 3940563 Number of successful extensions: 71689 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71593 Number of HSP's gapped (non-prelim): 96 length of query: 490 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 468 effective length of database: 17,147,199,772 effective search space: 8024889493296 effective search space used: 8024889493296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)