ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14i12 |
|---|---|
| Clone Library Name | barley_pub |
>AAKG1_RAT (P80385) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 330 Score = 69.3 bits (168), Expect = 8e-12 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD++P SSK+ + D L VK+AF + G+ PLWD + + GMLT +DF+ IL + Sbjct: 38 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY 97 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 98 YKSALVQIY-ELEEHKIETWREVYLQ 122
>AAKG1_PIG (Q09138) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) (38 kDa subunit) Length = 330 Score = 69.3 bits (168), Expect = 8e-12 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD++P SSK+ + D L VK+AF + G+ PLWD + + GMLT +DF+ IL + Sbjct: 39 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY 98 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 99 YKSALVQIY-ELEEHKIETWREVYLQ 123
>AAKG1_MOUSE (O54950) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 330 Score = 69.3 bits (168), Expect = 8e-12 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD++P SSK+ + D L VK+AF + G+ PLWD + + GMLT +DF+ IL + Sbjct: 38 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY 97 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 98 YKSALVQIY-ELEEHKIETWREVYLQ 122
>AAKG1_HUMAN (P54619) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 331 Score = 69.3 bits (168), Expect = 8e-12 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD++P SSK+ + D L VK+AF + G+ PLWD + + GMLT +DF+ IL + Sbjct: 39 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY 98 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 99 YKSALVQIY-ELEEHKIETWREVYLQ 123
>AAKG1_BOVIN (P58108) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 330 Score = 68.9 bits (167), Expect = 1e-11 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD++P SSK+ + D L VK+AF + G+ PLWD + + GMLT +DF+ IL + Sbjct: 39 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY 98 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 99 YKSALVQIY-ELEEHKIETWREVFLQ 123
>AAKG3_MOUSE (Q8BGM7) 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK| gamma-3 chain) (AMPK gamma3) Length = 489 Score = 68.2 bits (165), Expect = 2e-11 Identities = 34/89 (38%), Positives = 51/89 (57%) Frame = +2 Query: 44 NTIYDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLIL 223 +T YD + SSK+ I D L +K+AF M G+ PLWD + + GMLT +DF+L+L Sbjct: 191 HTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPLWDSKKQSFVGMLTITDFILVL 250 Query: 224 RKLQMNIRVLGHEELEMHSVSAWKEAKLQ 310 + + V + E+E H + W+E LQ Sbjct: 251 HRYYRSPLVQIY-EIEEHKIETWREIYLQ 278
>AAKG3_HUMAN (Q9UGI9) 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK| gamma-3 chain) (AMPK gamma3) Length = 489 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/89 (37%), Positives = 51/89 (57%) Frame = +2 Query: 44 NTIYDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLIL 223 +T YD + SSK+ I D L +K+AF + G+ PLWD + + GMLT +DF+L+L Sbjct: 191 HTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDFILVL 250 Query: 224 RKLQMNIRVLGHEELEMHSVSAWKEAKLQ 310 + + V + E+E H + W+E LQ Sbjct: 251 HRYYRSPLVQIY-EIEQHKIETWREIYLQ 278
>AAKG2_MOUSE (Q91WG5) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) Length = 566 Score = 67.8 bits (164), Expect = 2e-11 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD+VP SSK+ + D L VK+AF + G+ PLW+ + + GMLT +DF+ IL + Sbjct: 268 YDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRY 327 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 328 YKSPMVQIY-ELEEHKIETWRELYLQ 352
>AAKG2_PONPY (Q5R4S0) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) Length = 524 Score = 67.8 bits (164), Expect = 2e-11 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD+VP SSK+ + D L VK+AF + G+ PLW+ + + GMLT +DF+ IL + Sbjct: 226 YDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRY 285 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 286 YKSPMVQIY-ELEEHKIETWRELYLQ 310
>AAKG2_HUMAN (Q9UGJ0) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) (H91620p) Length = 569 Score = 67.8 bits (164), Expect = 2e-11 Identities = 34/86 (39%), Positives = 50/86 (58%) Frame = +2 Query: 53 YDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLILRKL 232 YD+VP SSK+ + D L VK+AF + G+ PLW+ + + GMLT +DF+ IL + Sbjct: 271 YDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRY 330 Query: 233 QMNIRVLGHEELEMHSVSAWKEAKLQ 310 + V + ELE H + W+E LQ Sbjct: 331 YKSPMVQIY-ELEEHKIETWRELYLQ 355
>AAKG3_PIG (Q9MYP4) 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK| gamma-3 chain) (AMPK gamma3) Length = 514 Score = 67.0 bits (162), Expect = 4e-11 Identities = 33/89 (37%), Positives = 51/89 (57%) Frame = +2 Query: 44 NTIYDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLIL 223 +T YD + SSK+ I D L +K+AF + G+ PLWD + + GMLT +DF+L+L Sbjct: 216 HTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDFILVL 275 Query: 224 RKLQMNIRVLGHEELEMHSVSAWKEAKLQ 310 + + V + E+E H + W+E LQ Sbjct: 276 HRYYRSPLVQIY-EIEEHKIETWREIYLQ 303
>SNF4_YEAST (P12904) Nuclear protein SNF4 (Regulatory protein CAT3)| Length = 322 Score = 55.5 bits (132), Expect = 1e-07 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = +2 Query: 23 VSEILLHNTIYDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTA 202 + + L T YDV+PVS ++ +LD L VK++ N++ + PLWD G+LT Sbjct: 22 IRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTT 81 Query: 203 SDFVLILR 226 +DF+ +++ Sbjct: 82 TDFINVIQ 89
>SNF4_KLULA (Q9P869) Nuclear protein SNF4| Length = 328 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/64 (39%), Positives = 39/64 (60%) Frame = +2 Query: 35 LLHNTIYDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFV 214 L T YDV+PVS ++ +LD L VK++ NI+ + PLWD G+LT+SDF+ Sbjct: 31 LQSKTSYDVLPVSYRLIVLDTSLLVKKSLNILLQNNVVSAPLWDAQTSKFAGLLTSSDFI 90 Query: 215 LILR 226 +++ Sbjct: 91 NVIQ 94
>YL28_SCHPO (Q10343) Hypothetical protein C1556.08c in chromosome I| Length = 334 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = +2 Query: 23 VSEILLHNTIYDVVPVSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTA 202 + + T YDV+P S ++ + D L VK + +++ + PLWD G+LT Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74 Query: 203 SDFVLILR 226 +DFV +++ Sbjct: 75 ADFVNVIK 82 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/78 (23%), Positives = 37/78 (47%) Frame = +3 Query: 357 VHVKDSDNLRDVALTIIQNEISSVPIFKSSTDISGIPLLNLATLPGILKFLCSKLQEQPE 536 ++V +L D L + ++ +P+ + ++++ T ILKF+ +E Sbjct: 120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET-- 177 Query: 537 GYPILRNQISSIPIGTWS 590 +LR ++ + IGTWS Sbjct: 178 --AMLRVPLNQMTIGTWS 193
>LEC_LOTTE (P19664) Anti-H(O) lectin (LTA)| Length = 240 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/28 (32%), Positives = 19/28 (67%) Frame = +2 Query: 152 VPLWDDGQGTITGMLTASDFVLILRKLQ 235 VP+WD G + +T+ +F+ ++R+L+ Sbjct: 54 VPIWDSATGNVASFVTSFNFLFVIRELK 81
>CBS_YEAST (P32582) Cystathionine beta-synthase (EC 4.2.1.22) (Serine| sulfhydrase) (Beta-thionase) Length = 507 Score = 29.3 bits (64), Expect = 9.2 Identities = 13/55 (23%), Positives = 26/55 (47%) Frame = +3 Query: 312 IMGGLDVAGMQRRPLVHVKDSDNLRDVALTIIQNEISSVPIFKSSTDISGIPLLN 476 + G V + +P+V VK++ + DV + N +P+ +SG+ L+ Sbjct: 363 VFGNATVKDLHLKPVVSVKETAKVTDVIKILKDNGFDQLPVLTEDGKLSGLVTLS 417
>LEF7_NPVAC (P41677) Late expression factor 7| Length = 226 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -1 Query: 267 SSSWPRTRMFICNFLKINTKSEAVSMPVMVPWPSSQRGTKARPSSCIILNACL 109 +S P T FICN+L I + A P +VP S + +SC+ N C+ Sbjct: 61 ASYHPTTDQFICNYLGITNQPMA---PYLVPLLSFGK------ASCVFFNKCI 104
>Y525_METKA (P50100) Hypothetical protein MK0525 (OrfX)| Length = 196 Score = 29.3 bits (64), Expect = 9.2 Identities = 13/51 (25%), Positives = 29/51 (56%) Frame = +2 Query: 68 VSSKIAILDARLPVKQAFNIMHDEGLALVPLWDDGQGTITGMLTASDFVLI 220 +S + ++ + V +A +M D+G+ +P+ DD G + G++T D + + Sbjct: 76 MSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDD-NGKLIGIVTMQDILQV 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,114,753 Number of Sequences: 219361 Number of extensions: 1841851 Number of successful extensions: 4678 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4667 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
