Clone Information

BLAST Search Result

Clone Name	bags14h15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YP18_YEAST (Q06489) Hypothetical 45.0 kDa protein in PIS1-CLB2 i...	120	3e-27
2	MTNA_THEMA (Q9X013) Probable methylthioribose-1-phosphate isomer...	113	5e-25
3	MTNA_PSEAE (Q9HZ65) Probable methylthioribose-1-phosphate isomer...	110	3e-24
4	MTNA_XYLFA (Q9PAG5) Probable methylthioribose-1-phosphate isomer...	107	3e-23
5	MTNA_LEPIN (Q8F2A8) Probable methylthioribose-1-phosphate isomer...	106	5e-23
6	MTNA_LEPIC (Q72T46) Probable methylthioribose-1-phosphate isomer...	106	5e-23
7	MTNA_XYLFT (Q87A92) Probable methylthioribose-1-phosphate isomer...	104	2e-22
8	MTNA_PSESM (Q885T7) Probable methylthioribose-1-phosphate isomer...	103	3e-22
9	YQJQ_CAEEL (Q93169) Hypothetical protein C01G10.9 in chromosome V	102	7e-22
10	MTNA_SYNY3 (P74497) Probable methylthioribose-1-phosphate isomer...	100	3e-21
11	EI2B_AQUAE (O67879) Putative translation initiation factor eIF-2...	100	3e-21
12	EI2B1_ARCFU (O29877) Putative translation initiation factor eIF-...	100	6e-21
13	EI2B1_METTH (O27900) Putative translation initiation factor eIF-...	96	7e-20
14	EI2B1_PYRFU (Q8U178) Putative translation initiation factor eIF-...	95	2e-19
15	EI2B1_PYRHO (O58433) Putative translation initiation factor eIF-...	93	7e-19
16	EI2B1_AERPE (Q9YE84) Putative translation initiation factor eIF-...	92	1e-18
17	EI2B1_METJA (Q57896) Putative translation initiation factor eIF-...	90	5e-18
18	EI2B1_PYRAB (Q9UZ16) Putative translation initiation factor eIF-...	89	8e-18
19	MTNA_PSEPK (Q88M09) Probable methylthioribose-1-phosphate isomer...	82	1e-15
20	MTNA_BACSU (O31662) Methylthioribose-1-phosphate isomerase (EC 5...	72	1e-12
21	YPE3_RHORU (P23140) Hypothetical protein in petC 3'region (Fragm...	48	3e-05
22	EI2B2_METJA (Q57586) Putative translation initiation factor eIF-...	47	4e-05
23	EI2B2_PYRAB (Q9V281) Putative translation initiation factor eIF-...	43	7e-04
24	EI2B2_PYRHO (O57947) Putative translation initiation factor eIF-...	41	0.003
25	EI2B2_ARCFU (O28242) Putative translation initiation factor eIF-...	38	0.022
26	TALA_DICDI (P54633) Filopodin (Talin homolog)	34	0.32
27	DNAA_HAEDU (Q7VMW1) Chromosomal replication initiator protein dnaA	33	0.54
28	PBPB_BUCAI (P57296) Penicillin-binding protein 1B (PBP-1b) (PBP1...	33	0.92
29	K2C3_RABIT (Q29426) Keratin, type II cytoskeletal 3 (Cytokeratin...	31	3.5
30	YL085_MIMIV (Q5UPG1) Putative BTB/POZ domain-containing protein L85	30	4.6
31	DPOL_BPPRD (P10479) DNA polymerase (EC 2.7.7.7) (Protein P1)	30	4.6
32	PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependen...	30	6.0
33	CARB_LEPIN (Q8F832) Carbamoyl-phosphate synthase large chain (EC...	30	6.0
34	CARB_LEPIC (Q72NF1) Carbamoyl-phosphate synthase large chain (EC...	30	6.0
35	Y4TP_RHISN (Q53191) Probable peptide ABC transporter permease pr...	30	6.0
36	YPH2_CHRVI (P45372) Hypothetical 40.5 kDa protein in phbC-phbA i...	30	7.8

>YP18_YEAST (Q06489) Hypothetical 45.0 kDa protein in PIS1-CLB2 intergenic|
           region
          Length = 411

 Score =  120 bits (301), Expect = 3e-27
 Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 31/216 (14%)
 Frame = +2

Query: 14  GWNAIRDMVVRGXXXXXXXXXXXXXVEVN--DHNFIGTPAEAASFVS---------KKLE 160
           G++ I+ M VRG              EV    HN     A   S V+         K+L+
Sbjct: 41  GYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLD 100

Query: 161 YLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGL 340
           +L+SSRPTAVNLS++  +++N++ ++++      S++    E    ++ +D+A+N  +G 
Sbjct: 101 FLLSSRPTAVNLSNSLVEIKNILKSSSDLKAFDGSLYNYVCE----LIDEDLANNMKMGD 156

Query: 341 HGAEFLQRQL---GSSKNISVLTHCNTGSLATAGYGTALGVIRAL-----------HSGG 478
           +GA++L   L   G     +VLT CNTGSLAT+GYGTALGVIR+L            SG 
Sbjct: 157 NGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKADSGL 216

Query: 479 VLEK------AFCTETRPFNQGSRLTAFELVHDKIP 568
             EK       F  ETRP+NQGSRLTA+ELV+DKIP
Sbjct: 217 DNEKCPRMGHVFPLETRPYNQGSRLTAYELVYDKIP 252

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>MTNA_THEMA (Q9X013) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 343

 Score =  113 bits (282), Expect = 5e-25
 Identities = 72/204 (35%), Positives = 107/204 (52%)
 Frame = +2

Query: 20  NAIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLS 199
           +AI++M+VRG             + + D+           ++ +  E L  +RPTAVNL 
Sbjct: 40  HAIKEMIVRGAPAIGVAAAFGYVLGLRDYK----TGSLTDWMKQVKETLARTRPTAVNLF 95

Query: 200 DAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSS 379
            A  +++ +    A    D +++F++    A  M  +D+  NKAIG +GA+ ++   GS+
Sbjct: 96  WALNRMEKVFFENA----DRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIKD--GST 149

Query: 380 KNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHD 559
               +LTHCN G+LAT  YGTALGVIRA    G   + F  ETRP+ QG+RLTA+EL+ D
Sbjct: 150 ----ILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKD 205

Query: 560 KIPXXXXXXXXXXXLMNNGQVQAV 631
            I            LM  G + AV
Sbjct: 206 GIEVYVITDNMAGWLMKRGLIDAV 229

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>MTNA_PSEAE (Q9HZ65) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 358

 Score =  110 bits (276), Expect = 3e-24
 Identities = 74/200 (37%), Positives = 101/200 (50%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIRDMVVRG             +        G    AA  + +    L  SRPTAVNL  
Sbjct: 47  AIRDMVVRGAPAIGISAAYGIVLGARARLAQGGDWRAA--LEEDFRLLADSRPTAVNLFW 104

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  ++++ +    E  K+      V    A ++   D   N  +   G E +++Q GS +
Sbjct: 105 ALNRMRDRL----ERMKEGDQPLAVLEAEAISIHESDREANLTMAQLGMELIRKQQGSPQ 160

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
           NI  LTHCNTG+LAT G+GTALGVIRA H  G++ + +  ETRP+ QGSRLTA+EL ++ 
Sbjct: 161 NI--LTHCNTGALATGGFGTALGVIRAAHLEGLVNRIYADETRPWLQGSRLTAWELANEG 218

Query: 563 IPXXXXXXXXXXXLMNNGQV 622
           IP           LM    +
Sbjct: 219 IPVSLNVDSAAAHLMKTENI 238

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>MTNA_XYLFA (Q9PAG5) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 354

 Score =  107 bits (267), Expect = 3e-23
 Identities = 73/203 (35%), Positives = 106/203 (52%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIR ++VRG             +   +   +    EA   +   L+ L ++RPTAVNL+ 
Sbjct: 51  AIRALIVRGAPAIGIVAGWGAVLAAREIEAVDG-IEALRKLEPALQRLHAARPTAVNLAW 109

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
              +++  +S      + A +        AE++  +D+  N+ +G +GA  +   +GS  
Sbjct: 110 VLARMRRTLSAAHADWRQAMA------REAESIAREDLTANRCMGAYGAALIP--IGSG- 160

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
              VLTHCNTGSLATAG+GTALGVIRA  + G + + F  ETRP+ QG+RLT +EL  D 
Sbjct: 161 ---VLTHCNTGSLATAGFGTALGVIRAGIAQGRIARVFAGETRPWLQGARLTVWELQQDG 217

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           I            LM +GQVQ V
Sbjct: 218 IDVTLIADSAAAHLMKSGQVQWV 240

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>MTNA_LEPIN (Q8F2A8) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score =  106 bits (265), Expect = 5e-23
 Identities = 71/203 (34%), Positives = 107/203 (52%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIR+MVVRG             +  N  + +  P+   S +  KL  L+ SRPTAVNL  
Sbjct: 42  AIREMVVRGAPAIAITGAFGITLYWN--SLVSKPS--FSELKLKLSELLESRPTAVNLRL 97

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  +  +    +  ++   + I +   E A  ML +D+ +N  +  +      +Q  S  
Sbjct: 98  AIEEFSSRFPESNYSSFSLEEIQKGAEELALFMLSEDLENNLTLSKYALSLFPKQPSS-- 155

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
            ++++THCNTG+LATAG+GTALGVIR+L   G     F  ETRP+ QG+RLTA+EL  +K
Sbjct: 156 -LNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELQEEK 214

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           I            +M++ ++ AV
Sbjct: 215 IQSFLITDNMAGWVMSSRKIDAV 237

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>MTNA_LEPIC (Q72T46) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score =  106 bits (265), Expect = 5e-23
 Identities = 71/203 (34%), Positives = 107/203 (52%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIR+MVVRG             +  N  + +  P+   S +  KL  L+ SRPTAVNL  
Sbjct: 42  AIREMVVRGAPAIAITGAFGITLYWN--SLVSKPS--FSELKLKLSELLESRPTAVNLRL 97

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  +  +    +  ++   + I +   E A  ML +D+ +N  +  +      +Q  S  
Sbjct: 98  AIEEFSSRFPESNYSSFSLEEIQKGAEELALFMLSEDLENNLTLSKYALSLFPKQPSS-- 155

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
            ++++THCNTG+LATAG+GTALGVIR+L   G     F  ETRP+ QG+RLTA+EL  +K
Sbjct: 156 -LNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELQEEK 214

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           I            +M++ ++ AV
Sbjct: 215 IQSFLITDNMAGWVMSSRKIDAV 237

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>MTNA_XYLFT (Q87A92) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 354

 Score =  104 bits (260), Expect = 2e-22
 Identities = 73/203 (35%), Positives = 105/203 (51%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIR ++VRG             +   +   +    EA   +   L+ L ++RPTAVNL+ 
Sbjct: 51  AIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDG-IEALCKLEPALQRLHAARPTAVNLAW 109

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
              +++  +S      +      QV    AE++  +D+  N+ +G +GA  +   +GS  
Sbjct: 110 VLARMRRTLSAAHADWR------QVMECEAESIAREDLTANRCMGAYGAALIP--IGSG- 160

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
              VLTHCNTGSLATAG+GTALGVIR   + G + + F  ETRP+ QG+RLT +EL  D 
Sbjct: 161 ---VLTHCNTGSLATAGFGTALGVIRDGIAQGRIARVFVGETRPWLQGARLTVWELQQDG 217

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           I            LM +GQVQ V
Sbjct: 218 IDATLIADSAAAHLMKSGQVQWV 240

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>MTNA_PSESM (Q885T7) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 358

 Score =  103 bits (258), Expect = 3e-22
 Identities = 67/195 (34%), Positives = 100/195 (51%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIR MVVRG             +       I    +    + + ++ L  SRPTAVNL  
Sbjct: 47  AIRTMVVRGAPAIGISAAYGAVLGARAR--IAEGGDWYPALEEDMQLLADSRPTAVNLFW 104

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  ++++ +       K+  +        A  + + D   N  +   GA+ +++  G+ +
Sbjct: 105 ALNRIRDRLMRV----KNGDNPLAALEAEAVAIHLSDREANLTMAQLGADLIRKHQGNLQ 160

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
             +VLTHCNTG+LAT G+GTALGVIRA H  G++E+ +  ETRP+ QGSRLTA+EL ++ 
Sbjct: 161 --TVLTHCNTGALATGGFGTALGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEG 218

Query: 563 IPXXXXXXXXXXXLM 607
           IP           LM
Sbjct: 219 IPVTLNADSAAAHLM 233

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>YQJQ_CAEEL (Q93169) Hypothetical protein C01G10.9 in chromosome V|
          Length = 366

 Score =  102 bits (255), Expect = 7e-22
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 4/206 (1%)
 Frame = +2

Query: 26  IRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSDA 205
           I+ M VRG             +E+   + + + +     + +K+ +L+SSRPTAV+L ++
Sbjct: 62  IKSMQVRGAPLIAVVGSLGLLLEIQKASELDSES-----IIQKINFLISSRPTAVDLRNS 116

Query: 206 ATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLV----DDVADNKAIGLHGAEFLQRQLG 373
              L+ ++ +     +D   +  V +E   + L+    D+   N+ +  +  + L     
Sbjct: 117 LNGLKPILES-----QDYSDV--VKLEKCRSYLLNVYTDEKLQNRILVWNAYQELLSAFP 169

Query: 374 SSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELV 553
             + ++V+T CNTGSLAT  +GTALGVIRALHS   L+  +  ETRP+NQG RLT+ EL+
Sbjct: 170 DKEKLTVMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELL 229

Query: 554 HDKIPXXXXXXXXXXXLMNNGQVQAV 631
           H ++P            M N QV  V
Sbjct: 230 HGEVPFKLITDSMAAWAMKNHQVDCV 255

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>MTNA_SYNY3 (P74497) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 351

 Score =  100 bits (250), Expect = 3e-21
 Identities = 60/158 (37%), Positives = 87/158 (55%)
 Frame = +2

Query: 158 EYLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIG 337
           + L  +RPTAVNL  A  ++ N+   + E  +  K+     +  A+ + +DD+   +AIG
Sbjct: 90  DQLRQTRPTAVNLFWAIDQMLNVAYHSGENVEQIKANL---LSQAQQIQLDDLRTCQAIG 146

Query: 338 LHGAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPF 517
             G E L R+      +++LTHCN G+LATAGYGTA+GVIRA  S G L + +  ETRP 
Sbjct: 147 AAGLEVLPRE---PHQLTILTHCNAGALATAGYGTAIGVIRAAWSAGRLARVYADETRPR 203

Query: 518 NQGSRLTAFELVHDKIPXXXXXXXXXXXLMNNGQVQAV 631
            QG++LT +E V   IP            M   ++ AV
Sbjct: 204 LQGAKLTVWECVQAGIPVTLITDNMAAHCMQQQRIDAV 241

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>EI2B_AQUAE (O67879) Putative translation initiation factor eIF-2B (eIF-2B|
           GDP-GTP exchange factor)
          Length = 456

 Score =  100 bits (250), Expect = 3e-21
 Identities = 64/161 (39%), Positives = 85/161 (52%)
 Frame = +2

Query: 149 KKLEYLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNK 328
           K  E L ++RPTA NL  A  ++   +    +  ++AK I +           +D   NK
Sbjct: 202 KVYETLKNTRPTAYNLFWALDRMMKALKEGKDIEEEAKEIEK-----------EDYEANK 250

Query: 329 AIGLHGAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTET 508
            +G  G+E +        N  VLTHCNTG+LATAG+GTALGVIR+ H GG     +  ET
Sbjct: 251 RMGEIGSEIVPL------NAKVLTHCNTGALATAGWGTALGVIRSAHYGGKNIFVWVDET 304

Query: 509 RPFNQGSRLTAFELVHDKIPXXXXXXXXXXXLMNNGQVQAV 631
           RP+ QG+RLTA+ELV + IP           LM  G V  V
Sbjct: 305 RPYLQGARLTAWELVKESIPHKIITDSTAGFLMKKGMVDLV 345

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>EI2B1_ARCFU (O29877) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 339

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 65/204 (31%), Positives = 95/204 (46%)
 Frame = +2

Query: 20  NAIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLS 199
           +AI+ + VRG             +   +  F     E    + K  ++L S+RPTAVNL 
Sbjct: 35  DAIKKLAVRGAPALEAAGAYGIALAAREREFADVD-ELKEHLKKAADFLASTRPTAVNLF 93

Query: 200 DAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSS 379
               +  N     A   +  + + ++ +  AE +  +DV  N+ +G +GAE L+      
Sbjct: 94  VGIERALN----AALKGESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLE------ 143

Query: 380 KNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHD 559
               VLT+CN G LAT  +GTALGV+R+    G   +    ETRP NQGSRLT +EL+ D
Sbjct: 144 DGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMED 203

Query: 560 KIPXXXXXXXXXXXLMNNGQVQAV 631
            I            +M  G V  V
Sbjct: 204 GIDVTLITDSMVGIVMQKGMVDKV 227

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>EI2B1_METTH (O27900) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 311

 Score = 96.3 bits (238), Expect = 7e-20
 Identities = 68/203 (33%), Positives = 92/203 (45%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AI++MVVRG             +        G   E A+      E + +SRPTAVNL  
Sbjct: 39  AIKNMVVRGAPAIGVTAAFGVAMA----ELAGEDVEVAA------EEIKASRPTAVNLFW 88

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  ++    S                ++ A TM ++D+  N+AIG HGA  ++       
Sbjct: 89  AVDRVMKSESP---------------LDEAITMYMEDMETNRAIGRHGAGLIE------D 127

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
             +VLTHCN G+LA   YGTALGVIRA    G      C ETRP  QG+RL+ +E+  + 
Sbjct: 128 GDTVLTHCNAGALACVDYGTALGVIRAAWDDGKRLTVICDETRPVGQGARLSVWEMQQEG 187

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           IP           LM  G +  V
Sbjct: 188 IPVKLITDVAAGYLMQTGMIDKV 210

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>EI2B1_PYRFU (Q8U178) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 356

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 65/203 (32%), Positives = 97/203 (47%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AI++M VRG             +         T  E      +  E L ++RPTAVNL  
Sbjct: 50  AIKNMTVRGAPAIGAAAAFGLALYAETSK-AKTKDEFFDGFYRAYETLKNTRPTAVNLFW 108

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  +++ LV    E + D   I ++ +E A+ +  +DV  N  +G +GAE L        
Sbjct: 109 ALNRIKKLVEEHREDSLD--EIKRLIVEEAQKIADEDVEANLRMGHYGAEVLPEG----- 161

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
             ++LTHCN GSLAT   GT   V+R +H  G L+  +  ETRP  QG+RL+A+E  +D 
Sbjct: 162 --NILTHCNAGSLATVHLGTVGAVVRVMHKEGTLKLLWLDETRPVLQGARLSAWEYSYDG 219

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           +            +M  G+V A+
Sbjct: 220 LNVKLIADNAAAFVMQQGKVDAI 242

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>EI2B1_PYRHO (O58433) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 364

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 65/203 (32%), Positives = 95/203 (46%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AI++M VRG             +         T  E      K  E L ++RPTAVNL  
Sbjct: 50  AIKNMTVRGAPAIGAAAGFGLALYAETSK-AKTKEEFLDGFEKAYEILKNTRPTAVNLFW 108

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  +++ LV   +E   D   I ++ ++ A  +  +DV  N  +G +GAE L        
Sbjct: 109 ALNRIKKLVEEHSEDPLD--EIKRLIVQEAYKIADEDVEANLRMGHYGAEVLPEG----- 161

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
             ++LTHCN GSLAT   GT   V+R +H  G L+  +  ETRP  QG+RL+A+E  +D 
Sbjct: 162 --NILTHCNAGSLATVHLGTVGSVVRVMHKDGSLKLLWLDETRPVLQGARLSAWEYSYDG 219

Query: 563 IPXXXXXXXXXXXLMNNGQVQAV 631
           +            +M  G V A+
Sbjct: 220 LNVKLIADNAAAFVMQQGFVDAI 242

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>EI2B1_AERPE (Q9YE84) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 370

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 71/202 (35%), Positives = 95/202 (47%), Gaps = 2/202 (0%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPA--EAASFVSKKLEYLVSSRPTAVNL 196
           AI DM +RG             +   +    G     EA S   +++E   S+RPTA NL
Sbjct: 59  AIVDMEIRGAPAIGVAAAYALALAAAEAASRGGEGFIEALSEARREIE---STRPTAYNL 115

Query: 197 SDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGS 376
             A  ++   VS  A       +  +  +E A  + V+DV  N  IG  GA  L+     
Sbjct: 116 FWATARVYGAVSE-AFRRSGVDAAVRAGLEEATRIYVEDVRGNVEIGRVGARLLE----- 169

Query: 377 SKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVH 556
               +VLTHCNTG+LATAG+GTALGVIR     G   +   TETRP  QG+RL  +EL  
Sbjct: 170 -SGDTVLTHCNTGALATAGFGTALGVIRYAWMEGKDIRVITTETRPVLQGARLNVWELRK 228

Query: 557 DKIPXXXXXXXXXXXLMNNGQV 622
           + IP           +M+ G V
Sbjct: 229 EGIPFKLVVDSAVGLIMSRGMV 250

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>EI2B1_METJA (Q57896) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 329

 Score = 90.1 bits (222), Expect = 5e-18
 Identities = 66/204 (32%), Positives = 97/204 (47%), Gaps = 1/204 (0%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXV-EVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLS 199
           AI+DMVVRG             + E+N  +           + K  E L ++RPTAVNL 
Sbjct: 43  AIKDMVVRGAPAIGVSAAYGLALAEINGDD-----------IYKAYEVLKNTRPTAVNLF 91

Query: 200 DAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSS 379
            A  +            K+ KSI    ++ A+ +  +D+   K IG+ G + ++      
Sbjct: 92  WALDRCLTAY-------KEGKSI----LDEAKKIHEEDIETCKKIGMIGEKLIE------ 134

Query: 380 KNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHD 559
              ++LTHCN G+LAT+ YGTAL VIR     G   +    ETRP  QG++LTAFEL ++
Sbjct: 135 DGDTILTHCNAGALATSAYGTALSVIRFAFYNGKKIRVIADETRPRLQGAKLTAFELNYE 194

Query: 560 KIPXXXXXXXXXXXLMNNGQVQAV 631
            IP           LM  G++  +
Sbjct: 195 GIPVKVITDNTAGFLMQKGEIDKI 218

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>EI2B1_PYRAB (Q9UZ16) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 356

 Score = 89.4 bits (220), Expect = 8e-18
 Identities = 57/161 (35%), Positives = 82/161 (50%)
 Frame = +2

Query: 149 KKLEYLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNK 328
           K  E L ++RPTAVNL  A  +++ LV    E   D   I  + +  A+ +  +DV  N 
Sbjct: 91  KAYETLKNTRPTAVNLFWALNRIKKLVEEHLEDPLD--EIKSLIVNEAQKIADEDVEANL 148

Query: 329 AIGLHGAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTET 508
            +G +GAE L          ++LTHCN GSLAT   GT   V+R +H  G L+  +  ET
Sbjct: 149 RMGHYGAEVLPEG-------NLLTHCNAGSLATVHLGTVGAVVRVMHKDGSLKLLWLDET 201

Query: 509 RPFNQGSRLTAFELVHDKIPXXXXXXXXXXXLMNNGQVQAV 631
           RP  QG+RL+A+E  +D +            +M  G V A+
Sbjct: 202 RPVLQGARLSAWEYSYDGLNVKLIADNAAAFVMQQGLVDAI 242

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>MTNA_PSEPK (Q88M09) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 358

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 59/195 (30%), Positives = 92/195 (47%)
 Frame = +2

Query: 23  AIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSD 202
           AIRDM VRG             + + +    G   E    +      L  +RPTA NL  
Sbjct: 47  AIRDMAVRGASAIGIAAAYGLVLALEERLAEGGDWEMD--LEDDFLTLAEARPTAANLFW 104

Query: 203 AATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSK 382
           A  +++  +       +  + +       A  +   D   N  +   G E ++R  G+++
Sbjct: 105 ALNRMRERLLCL----RPEEDVLAALEAEAVAIHDSDREANLTMAQQGIELIRRHQGNAQ 160

Query: 383 NISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDK 562
             ++LT  N G+LA+ G+GTALGVIRA +  G++E+ +  ETRP+ QGSRLT +EL ++ 
Sbjct: 161 --ALLTFGNAGALASGGFGTALGVIRAGYLEGMVERVYAGETRPWLQGSRLTGWELANEG 218

Query: 563 IPXXXXXXXXXXXLM 607
           IP           LM
Sbjct: 219 IPVTLCADSALAHLM 233

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>MTNA_BACSU (O31662) Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)|
           (MTR-1-P isomerase)
          Length = 353

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 53/158 (33%), Positives = 76/158 (48%)
 Frame = +2

Query: 158 EYLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIG 337
           +YL SSRPTA+NLS A  +L + V   A +  +AK+     +  A  + V+D    + IG
Sbjct: 88  QYLNSSRPTAINLSWALERLSHSVEN-AISVNEAKTNL---VHEAIQIQVEDEETCRLIG 143

Query: 338 LHGAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPF 517
            +  +  +      K   ++T CN GS+AT+ YGTAL          +    +  ETRP 
Sbjct: 144 QNALQLFK------KGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPV 197

Query: 518 NQGSRLTAFELVHDKIPXXXXXXXXXXXLMNNGQVQAV 631
            QGSRLTA+EL+   I             M   Q+ AV
Sbjct: 198 LQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAV 235

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>YPE3_RHORU (P23140) Hypothetical protein in petC 3'region (Fragment)|
          Length = 184

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
 Frame = +2

Query: 20  NAIRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLS 199
           +AIR M+VRG             + + +      P++    +++  + L+++RPTAVNL 
Sbjct: 45  HAIRAMLVRGAPLIGATAAYGVALGMAED-----PSDEG--LTRACQTLLATRPTAVNLR 97

Query: 200 DAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQR----- 364
            A   ++ +  + A    D ++  Q     A  +  +DVA N+AIG HG   ++      
Sbjct: 98  WA---IEAMAESLAAVPPDQRA--QAAWAKAGAICDEDVALNEAIGDHGLGIIKDLARTK 152

Query: 365 --QLGSSKNISVLTHCNTGSLATAGY 436
             + G    I++LTHCN G LAT  +
Sbjct: 153 GVEKGGEGPINILTHCNAGWLATVDW 178

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>EI2B2_METJA (Q57586) Putative translation initiation factor eIF-2B subunit 2|
           (eIF-2B GDP-GTP exchange factor)
          Length = 308

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 38/121 (31%), Positives = 57/121 (47%)
 Frame = +2

Query: 164 LVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLH 343
           L+S+RPTAV+L +    +  L     E  K+        IE A+  +   +   + IG  
Sbjct: 63  LISARPTAVSLPNVVKYV--LKGLNEENPKER------VIERADEFINSSLKAIENIGKF 114

Query: 344 GAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQ 523
           GA  ++         ++LTHCN+ +        A+ VI+  +  G   K FCTETRP NQ
Sbjct: 115 GANRIK------DGDTILTHCNSEA--------AISVIKTAYDEGKDIKVFCTETRPRNQ 160

Query: 524 G 526
           G
Sbjct: 161 G 161

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>EI2B2_PYRAB (Q9V281) Putative translation initiation factor eIF-2B subunit 2|
           (eIF-2B GDP-GTP exchange factor)
          Length = 324

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 41/181 (22%), Positives = 79/181 (43%)
 Frame = +2

Query: 26  IRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSDA 205
           I+ M +RG             ++  + +   +P E  + + +  + L  +RPTAV+L +A
Sbjct: 16  IKSMEIRGAGKIARSVAQALMIQA-EKSTAKSPEELWTELKEAAKILYKTRPTAVSLPNA 74

Query: 206 ATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSKN 385
              + +       +  D +++    I +A+  + +     + IG  GA+ ++        
Sbjct: 75  LRYVMHRAKIAYSSGADLETLRFTVINSAKEFIHNSEKAIERIGEIGAKRIE------DG 128

Query: 386 ISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDKI 565
             ++THC++ +        A+ V++     G   K   TETRP  QG ++TA EL    I
Sbjct: 129 DVIMTHCHSKA--------AISVMKTAFDQGKDIKVIVTETRPRWQG-KITAKELASYGI 179

Query: 566 P 568
           P
Sbjct: 180 P 180

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>EI2B2_PYRHO (O57947) Putative translation initiation factor eIF-2B subunit 2|
           (eIF-2B GDP-GTP exchange factor)
          Length = 324

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 42/181 (23%), Positives = 78/181 (43%)
 Frame = +2

Query: 26  IRDMVVRGXXXXXXXXXXXXXVEVNDHNFIGTPAEAASFVSKKLEYLVSSRPTAVNLSDA 205
           I+ M +RG             ++  + +    P E  + +    + L ++RPTAV+L +A
Sbjct: 16  IKSMEIRGAGRIARAAAQALMIQA-EKSKAKEPEELWNELKVASKILYNTRPTAVSLPNA 74

Query: 206 ATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSKN 385
              + + V        D +++    I +A+  + +     + IG  GA+ ++        
Sbjct: 75  LRYVMHRVKAAYLGGADLETLRFTAINSAKEFIYNSEKAIERIGEIGAKRIE------DG 128

Query: 386 ISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFELVHDKI 565
             ++THC++ +        A+ V++     G   K   TETRP  QG ++TA EL    I
Sbjct: 129 DIIMTHCHSKA--------AISVMKKAFEQGKNIKVIVTETRPKWQG-KITAKELASYGI 179

Query: 566 P 568
           P
Sbjct: 180 P 180

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>EI2B2_ARCFU (O28242) Putative translation initiation factor eIF-2B subunit 2|
           (eIF-2B GDP-GTP exchange factor)
          Length = 313

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 35/123 (28%), Positives = 56/123 (45%)
 Frame = +2

Query: 158 EYLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIG 337
           E L+++RPTAV+L +A   +      + E  + +     V   A E +   + A  K IG
Sbjct: 51  ETLLNTRPTAVSLYNAINYVMRYSGESVEEKRQS-----VIRRAREFINWVETAQRK-IG 104

Query: 338 LHGAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCTETRPF 517
             G + ++         +V+THCN+ +        AL VI+  H  G   +   TE+RP 
Sbjct: 105 EIGEKRIK------DGYTVMTHCNSSA--------ALSVIKKAHENGKRVEVIATESRPR 150

Query: 518 NQG 526
            QG
Sbjct: 151 WQG 153

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>TALA_DICDI (P54633) Filopodin (Talin homolog)|
          Length = 2492

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = +2

Query: 119  TPAEAASFVSKKLEYLVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAET 298
            T  +A   +    + + SSR T  +L  A TK+ N VS+  +TAKD  S+      A  T
Sbjct: 1977 TITQAKLLIVSSSQLVGSSRGTQEHLGSATTKVANTVSSLVKTAKDIASVL-----ADTT 2031

Query: 299  MLVDDVADNKAIGLHGAEFL 358
               D ++ +KA+ +   + +
Sbjct: 2032 SQQDILSASKALSISSQQMV 2051

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>DNAA_HAEDU (Q7VMW1) Chromosomal replication initiator protein dnaA|
          Length = 448

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
 Frame = +2

Query: 110 FIGTPAEAASFVSK----KLEYLVSSRPTAVNLSDAATKLQNLVSTTA---ETAKDAKSI 268
           F+    + A F+SK    K+   V ++PT  NLS ++T  + L   T    +T  + +  
Sbjct: 58  FLTEIIDLARFLSKNEQLKITIRVGNKPTEQNLSASSTNKEELTQDTVHKFKTGLNGRLT 117

Query: 269 FQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTAL 448
           F  F++     L   VA              +Q+  +   S   HCN  SL     GT L
Sbjct: 118 FDNFVQGKSNQLAKAVA--------------QQVADNPGES---HCNPFSLYG---GTGL 157

Query: 449 GVIRALHSGG 478
           G    LH+ G
Sbjct: 158 GKTHLLHAVG 167

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>PBPB_BUCAI (P57296) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein|
           polymerase) [Includes: Penicillin-insensitive
           transglycosylase (EC 2.4.1.129) (Peptidoglycan
           glycosyltransferase) (Peptidoglycan TGase);
           Penicillin-sensitive transpeptidase (EC 3.
          Length = 760

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = +2

Query: 137 SFVSKKLEYLVSSRPTAVNLSDAATKLQNLVS----TTAETAKDAKSIFQVFIEAAETML 304
           S +S   + L  + P ++++  +      L        + TAK   +IF+ F  A +T  
Sbjct: 581 SIISDDGKVLYQNLPQSIHIESSEASYLTLYGMQQVVKSGTAKSLGTIFKEFSLAGKTGT 640

Query: 305 VDDVADNKAIGLHGAEFLQRQLGSSKNISVLTHCNTGSL 421
            +++ DN  +G+ G + +   +G   N +   + ++G++
Sbjct: 641 TNNLVDNWFVGIDGKQIVITWIGRDNNHTTRLYSSSGAM 679

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>K2C3_RABIT (Q29426) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3)
          Length = 629

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 194 LSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDV--ADNKAIGLHGAEF-LQR 364
           L DA  KLQ L +   +   D   + + + E     L  DV  A  + + L G E  +  
Sbjct: 442 LKDANAKLQELQAALQQAKDDLARLLRDYQELMNVKLALDVEIATYRKL-LEGEESRMSG 500

Query: 365 QLGSSKNISVLTHCNTGSLATAGYGTALG 451
           +  S+ +ISV+   +T S A  GYG   G
Sbjct: 501 ECQSAVSISVVNSSSTTSAAAGGYGGGYG 529

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>YL085_MIMIV (Q5UPG1) Putative BTB/POZ domain-containing protein L85|
          Length = 419

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 437 HNQRLQGCQYYNGLEQ---KCFLNFQAAVEGIQLHANQLPYYQPHH 309
           +N++  GC YYN  ++   KC +N         L+A ++  + P H
Sbjct: 341 YNKKKYGCDYYNSYDKKKYKCVVNIDGFPNDKLLYAKKINNFNPKH 386

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>DPOL_BPPRD (P10479) DNA polymerase (EC 2.7.7.7) (Protein P1)|
          Length = 553

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
 Frame = +2

Query: 251 KDAKSIFQVFIEAAETMLVDDVA--DNKAIGLHGAEFLQRQLGSSKNISVLTH---CNTG 415
           +D+ +I  V + A++  +  D    + +    H AE L+   G    +  +        G
Sbjct: 106 RDSYAILPVPLAASDEKIEIDYGKMERETREQHKAEILEYLKGDCVTLHKMVSLFIAEFG 165

Query: 416 SLATAGYGTALGVIRALHSGGVLEKAFCTETRPFNQGSRLTAFE--LVHDKI 565
              T G GTA+  ++  H    + K F    RPF  G R  AFE  ++ D I
Sbjct: 166 MRLTIG-GTAMNELKQFHPYDPVRKGFDEAMRPFYFGGRCQAFEKGIIEDDI 216

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>PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependent|
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2185

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 185  AVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGL 340
            A+N+  ++  L+  ++  A  ++D   +   FI+ A+ + +D VADN  I L
Sbjct: 1075 AMNVVHSSQDLETFLTEAAAVSRDHPVVISKFIQEAKEIEIDAVADNGRIVL 1126

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>CARB_LEPIN (Q8F832) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1106

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +2

Query: 113 IGTPAEAASFVSKKLEYLVSSRPT------AVNLSDAATKLQNLVSTTAETAKDAKSIFQ 274
           I T  E A  ++ K+ Y V  RP+      A+ + +   +L   +    E +KD   +  
Sbjct: 722 IATSMEEAREIAHKIGYPVLVRPSYVLGGRAMLIINEEKELDRYMEKAEEISKDRPLLID 781

Query: 275 VFIEAAETMLVDDVADNKAIGLHG 346
            F+E A  + VD + D K + + G
Sbjct: 782 SFLEDAIEVDVDALCDGKEVFVTG 805

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>CARB_LEPIC (Q72NF1) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1106

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +2

Query: 113 IGTPAEAASFVSKKLEYLVSSRPT------AVNLSDAATKLQNLVSTTAETAKDAKSIFQ 274
           I T  E A  ++ K+ Y V  RP+      A+ + +   +L   +    E +KD   +  
Sbjct: 722 IATSMEEAREIAHKIGYPVLVRPSYVLGGRAMLIINEEKELDRYMEKAEEISKDRPLLID 781

Query: 275 VFIEAAETMLVDDVADNKAIGLHG 346
            F+E A  + VD + D K + + G
Sbjct: 782 SFLEDAIEVDVDALCDGKEVFVTG 805

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>Y4TP_RHISN (Q53191) Probable peptide ABC transporter permease protein y4tP|
          Length = 313

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 27/113 (23%), Positives = 50/113 (44%)
 Frame = +2

Query: 164 LVSSRPTAVNLSDAATKLQNLVSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLH 343
           L    P AV     AT  + +V+   E     + +   F+  A  +L  +   +   G+ 
Sbjct: 29  LAPGDPAAVIAGPTAT--EQMVANIREELGLNEPLPVQFVHWASDVLRGNFGASVFTGVP 86

Query: 344 GAEFLQRQLGSSKNISVLTHCNTGSLATAGYGTALGVIRALHSGGVLEKAFCT 502
             + L ++L  + ++SVLT      + +   G + GV+ A  SGG +++A  T
Sbjct: 87  VLQLLSQRLEPTISLSVLT-----MILSVTVGVSFGVLAAWRSGGFVDRALAT 134

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>YPH2_CHRVI (P45372) Hypothetical 40.5 kDa protein in phbC-phbA intergenic|
           region (ORF2)
          Length = 357

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +2

Query: 227 VSTTAETAKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGAEFLQRQLGSSKNISVLTHC 406
           V  + +T   A++++  ++   E    D+VA  +   +HG   +  Q+   K +S+L   
Sbjct: 220 VIDSGKTIDSARALYDNWVACCEGAYADEVATPEYARIHG-RLVNAQMALKKRMSILVDE 278

Query: 407 NTGSL 421
           N G+L
Sbjct: 279 NLGAL 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,019,843
Number of Sequences: 219361
Number of extensions: 1671149
Number of successful extensions: 4207
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 4031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4173
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result