ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14g24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR293515.12| Zebrafish DNA sequence from clone CH211-106H4 i... 44 0.48
2ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
4gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genom... 42 1.9
5gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genom... 42 1.9
6gb|AY997529.2| Musa x paradisiaca chitinase (Chi-1) mRNA, comple... 42 1.9
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
8gb|AC164883.5| Mus musculus BAC clone RP23-88A20 from chromosome... 40 7.5
9ref|XM_548148.2| PREDICTED: Canis familiaris similar to LBP-9 (L... 40 7.5
10gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 7.5
11dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 7.5

>emb|CR293515.12| Zebrafish DNA sequence from clone CH211-106H4 in linkage group 2,
              complete sequence
          Length = 192891

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 332    tcaccttcaccagggatcatgc 353
              ||||||||||||||||||||||
Sbjct: 190367 tcaccttcaccagggatcatgc 190388



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>ref|XM_468715.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 ggcatgcacggccgccgcgag 183
           |||||||||||||||||||||
Sbjct: 63  ggcatgcacggccgccgcgag 43



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 163      ggcatgcacggccgccgcgag 183
                |||||||||||||||||||||
Sbjct: 17203169 ggcatgcacggccgccgcgag 17203149



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>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete
             sequence
          Length = 115326

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   ggcatgcacggccgccgcgag 183
             |||||||||||||||||||||
Sbjct: 35913 ggcatgcacggccgccgcgag 35893



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>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
             sequence
          Length = 153247

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   ggcatgcacggccgccgcgag 183
             |||||||||||||||||||||
Sbjct: 94562 ggcatgcacggccgccgcgag 94542



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>gb|AY997529.2| Musa x paradisiaca chitinase (Chi-1) mRNA, complete cds
          Length = 1082

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 ggcatgcacggccgccgcgag 183
           |||||||||||||||||||||
Sbjct: 106 ggcatgcacggccgccgcgag 86



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 163      ggcatgcacggccgccgcgag 183
                |||||||||||||||||||||
Sbjct: 17196738 ggcatgcacggccgccgcgag 17196718



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>gb|AC164883.5| Mus musculus BAC clone RP23-88A20 from chromosome 15, complete sequence
          Length = 260402

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   tgatcaccttcaccagggat 348
             ||||||||||||||||||||
Sbjct: 49245 tgatcaccttcaccagggat 49264



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>ref|XM_548148.2| PREDICTED: Canis familiaris similar to LBP-9 (LOC491028), mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 279  cctggtgcaagaggtggtggatct 302
            ||||||| ||||||||||||||||
Sbjct: 1414 cctggtggaagaggtggtggatct 1391



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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 515    acatgcccaagcttaaatacctga 538
              |||||||||||||| |||||||||
Sbjct: 140875 acatgcccaagcttcaatacctga 140852



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 315     accagctaagggcatgatca 334
               ||||||||||||||||||||
Sbjct: 2919088 accagctaagggcatgatca 2919069


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,451,327
Number of Sequences: 3902068
Number of extensions: 3451327
Number of successful extensions: 54639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54583
Number of HSP's gapped (non-prelim): 56
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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