>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1033

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 431 FFLKKNSDVKYTWAYTYTAPSIEQSDYYPRQLRR*TKRSI*TTNESTKRYR 279
           ++L+ N   KY W YTY + + ++  Y     RR   R+  +   S+  +R
Sbjct: 690 YYLRNNYGSKYKWEYTYYSRNKDRDGYESSYRRRTLSRAHYSRQSSSPEFR 740

>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1045

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 431 FFLKKNSDVKYTWAYTYTAPSIEQSDYYPRQLRR*TKRSI*TTNESTKRYR 279
           ++L+ N   +Y W YTY + + ++  Y     RR   R+  +   S+  +R
Sbjct: 690 YYLRNNYGSRYKWEYTYYSRNKDRDGYESSYRRRTLSRAHYSRQSSSPEFR 740

>FADI_ECO57 (Q8XCN9) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty acid|
           oxidation complex beta subunit) (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Acyl-CoA ligase) (ACSs)
          Length = 436

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 189 RCCSELGDEVVDVVADLLRPLLLDEVAGAGDDDQLLQQRHVGLEPALVQVVLDXRRSGTS 10
           R C+     V +VV  L+   +   +AG  D   +L    +G+   L +V++D  ++ T 
Sbjct: 97  RACATSFQAVANVVESLMAGTIRAGIAGGADSSSVLP---IGVSKKLARVLVDVNKARTM 153

Query: 9   GRR 1
            +R
Sbjct: 154 SQR 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,656,181
Number of Sequences: 219361
Number of extensions: 734029
Number of successful extensions: 1677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)